Wall clock time and date at job start Mon Mar 30 2020 23:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42901 * 113.99453 * 2 1 4 4 H 1.08996 * 109.47209 * 30.00342 * 3 2 1 5 5 C 1.52997 * 109.46910 * 149.99985 * 3 2 1 6 6 C 1.50706 * 109.47198 * 294.99643 * 5 3 2 7 7 C 1.38238 * 119.99775 * 90.00136 * 6 5 3 8 8 C 1.38235 * 119.99712 * 179.97438 * 7 6 5 9 9 C 1.38234 * 120.00220 * 359.97124 * 8 7 6 10 10 C 1.38233 * 120.00037 * 0.28719 * 9 8 7 11 11 C 1.38233 * 120.00212 * 270.02182 * 6 5 3 12 12 C 1.50694 * 109.47096 * 269.99804 * 3 2 1 13 13 O 1.20835 * 120.00212 * 355.00197 * 12 3 2 14 14 O 1.34224 * 120.00199 * 175.00321 * 12 3 2 15 15 C 1.45205 * 117.00458 * 179.97438 * 14 12 3 16 16 H 1.08998 * 109.46669 * 330.00232 * 15 14 12 17 17 C 1.53001 * 109.46929 * 89.99813 * 15 14 12 18 18 C 1.50700 * 109.47326 * 209.99873 * 15 14 12 19 19 H 1.07997 * 120.00153 * 0.02562 * 18 15 14 20 20 C 1.37876 * 119.99740 * 180.02562 * 18 15 14 21 21 N 1.31512 * 119.99952 * 180.02562 * 20 18 15 22 22 Si 1.86805 * 120.00063 * 0.02562 * 20 18 15 23 23 H 1.48504 * 109.47037 * 90.00206 * 22 20 18 24 24 H 1.48499 * 109.46901 * 210.00122 * 22 20 18 25 25 H 1.48495 * 109.47257 * 330.00012 * 22 20 18 26 26 H 1.08997 * 109.47344 * 299.99492 * 1 2 3 27 27 H 1.09003 * 109.47231 * 60.00568 * 1 2 3 28 28 H 1.09006 * 109.46477 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47286 * 174.99993 * 5 3 2 30 30 H 1.09002 * 109.47284 * 54.99416 * 5 3 2 31 31 H 1.08005 * 120.00068 * 359.97438 * 7 6 5 32 32 H 1.07999 * 119.99770 * 179.97438 * 8 7 6 33 33 H 1.08002 * 119.99744 * 180.02562 * 9 8 7 34 34 H 1.07998 * 120.00395 * 179.72811 * 10 9 8 35 35 H 1.07999 * 119.99956 * 0.02562 * 11 6 5 36 36 H 1.08999 * 109.47453 * 179.97438 * 17 15 14 37 37 H 1.09001 * 109.47330 * 300.00769 * 17 15 14 38 38 H 1.09002 * 109.46865 * 60.00235 * 17 15 14 39 39 H 0.97002 * 120.00266 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 0.5139 5 6 3.3588 1.2634 0.7212 6 6 3.1415 0.9238 2.1734 7 6 3.1431 -0.3968 2.5820 8 6 2.9443 -0.7083 3.9141 9 6 2.7446 0.3007 4.8375 10 6 2.7377 1.6210 4.4280 11 6 2.9402 1.9327 3.0966 12 6 2.2145 1.7644 -1.4208 13 8 1.9800 1.0134 -2.3379 14 8 2.6569 3.0074 -1.6676 15 6 2.8311 3.3809 -3.0599 16 1 3.0846 2.4964 -3.6443 17 6 1.5312 3.9881 -3.5914 18 6 3.9416 4.3933 -3.1733 19 1 4.4645 4.7227 -2.2876 20 6 4.2900 4.8989 -4.4078 21 7 5.2595 5.7820 -4.5068 22 14 3.3850 4.3296 -5.9396 23 1 2.2179 5.2150 -6.1828 24 1 4.3019 4.3874 -7.1063 25 1 2.9160 2.9339 -5.7474 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3632 -1.0278 -0.0005 29 1 3.8426 2.2372 0.6444 30 1 3.9930 0.5052 0.2618 31 1 3.2997 -1.1852 1.8606 32 1 2.9452 -1.7400 4.2333 33 1 2.5897 0.0573 5.8783 34 1 2.5772 2.4092 5.1488 35 1 2.9382 2.9644 2.7772 36 1 1.6620 4.2689 -4.6365 37 1 0.7279 3.2559 -3.5093 38 1 1.2777 4.8725 -3.0069 39 1 5.5044 6.1381 -5.3753 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835161664.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:54 Heat of formation + Delta-G solvation = -125.060385 kcal Electronic energy + Delta-G solvation = -21600.982128 eV Core-core repulsion = 18280.222099 eV Total energy + Delta-G solvation = -3320.760029 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.71414 -40.17832 -38.94997 -37.45601 -35.36702 -34.45417 -32.70656 -31.69546 -30.46771 -27.45161 -27.34718 -26.12532 -23.53158 -23.36742 -22.00615 -21.50499 -19.36278 -18.67647 -18.08315 -17.84084 -17.46002 -16.77154 -16.62363 -16.07459 -15.83273 -15.76668 -15.26088 -14.86231 -14.53312 -14.30251 -14.19276 -13.90194 -13.88464 -13.56323 -13.46615 -13.19694 -12.88896 -12.76664 -12.26954 -12.23096 -12.09919 -11.81976 -11.77032 -11.70390 -11.62974 -11.26498 -10.85155 -10.71598 -9.73726 -9.57832 -8.45791 -6.54537 0.45095 0.58533 1.13466 1.21691 1.29900 1.38776 1.70039 2.18060 2.63948 2.86785 2.93752 3.55198 3.77342 3.89729 4.00698 4.07190 4.20892 4.25292 4.36574 4.37820 4.42568 4.45083 4.47594 4.51066 4.69724 4.70908 4.76867 4.84986 4.88723 5.15607 5.18871 5.25588 5.31008 5.57435 5.64726 5.69751 5.76083 5.88131 6.12139 6.19200 6.49651 6.81072 7.10057 8.69945 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026530 B = 0.004207 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.158659 B = 6654.512173 C = 7301.007020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.364 6.364 3 C 0.120 3.880 4 H 0.121 0.879 5 C -0.071 4.071 6 C -0.089 4.089 7 C -0.111 4.111 8 C -0.127 4.127 9 C -0.125 4.125 10 C -0.126 4.126 11 C -0.126 4.126 12 C 0.425 3.575 13 O -0.537 6.537 14 O -0.347 6.347 15 C 0.191 3.809 16 H 0.027 0.973 17 C -0.164 4.164 18 C -0.538 4.538 19 H 0.051 0.949 20 C 0.033 3.967 21 N -0.928 5.928 22 Si 0.937 3.063 23 H -0.249 1.249 24 H -0.283 1.283 25 H -0.261 1.261 26 H 0.066 0.934 27 H 0.032 0.968 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.121 0.879 32 H 0.140 0.860 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.130 0.870 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.724 -10.940 17.181 22.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.282 6.282 3 C 0.060 3.940 4 H 0.138 0.862 5 C -0.108 4.108 6 C -0.089 4.089 7 C -0.129 4.129 8 C -0.145 4.145 9 C -0.143 4.143 10 C -0.144 4.144 11 C -0.144 4.144 12 C 0.268 3.732 13 O -0.427 6.427 14 O -0.263 6.263 15 C 0.137 3.863 16 H 0.045 0.955 17 C -0.221 4.221 18 C -0.576 4.576 19 H 0.069 0.931 20 C -0.167 4.167 21 N -0.566 5.566 22 Si 0.763 3.237 23 H -0.175 1.175 24 H -0.209 1.209 25 H -0.186 1.186 26 H 0.085 0.915 27 H 0.051 0.949 28 H 0.127 0.873 29 H 0.118 0.882 30 H 0.097 0.903 31 H 0.139 0.861 32 H 0.158 0.842 33 H 0.162 0.838 34 H 0.160 0.840 35 H 0.148 0.852 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.567 -11.179 16.761 22.303 hybrid contribution -0.136 0.232 -1.357 1.383 sum -9.704 -10.947 15.405 21.244 Atomic orbital electron populations 1.23103 0.79085 1.04690 1.00570 1.87991 1.21901 1.24523 1.93805 1.21689 0.98749 0.87228 0.86350 0.86170 1.20610 0.93439 1.04454 0.92345 1.19591 1.01437 0.94302 0.93565 1.21199 0.99373 0.95677 0.96684 1.21412 0.99813 1.00541 0.92743 1.21491 0.99421 0.92741 1.00607 1.21418 0.99793 0.97491 0.95672 1.21321 1.00020 0.99365 0.93726 1.25345 0.73136 0.80198 0.94485 1.90584 1.48355 1.55622 1.48104 1.86507 1.75660 1.31140 1.32979 1.20652 0.94721 0.94717 0.76225 0.95506 1.22414 0.97148 1.01688 1.00843 1.20927 1.17263 1.24294 0.95105 0.93076 1.25517 0.95514 0.94206 1.01492 1.69946 1.30110 1.30075 1.26459 0.86026 0.78817 0.80114 0.78769 1.17459 1.20929 1.18591 0.91523 0.94942 0.87253 0.88204 0.90330 0.86128 0.84245 0.83823 0.84040 0.85215 0.92586 0.92606 0.90786 0.91500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 10.81 113.37 1.23 1.69 16 2 O -0.36 -10.44 9.38 -129.95 -1.22 -11.66 16 3 C 0.12 3.54 2.61 29.84 0.08 3.62 16 4 H 0.12 2.95 7.79 -2.39 -0.02 2.93 16 5 C -0.07 -1.95 5.04 29.85 0.15 -1.80 16 6 C -0.09 -2.08 4.97 -19.86 -0.10 -2.18 16 7 C -0.11 -2.41 9.40 22.27 0.21 -2.20 16 8 C -0.13 -2.23 10.05 22.27 0.22 -2.00 16 9 C -0.12 -1.97 10.05 22.27 0.22 -1.75 16 10 C -0.13 -2.16 10.05 22.27 0.22 -1.93 16 11 C -0.13 -2.62 9.70 22.27 0.22 -2.40 16 12 C 0.42 17.02 7.22 71.23 0.51 17.53 16 13 O -0.54 -24.61 15.73 28.36 0.45 -24.17 16 14 O -0.35 -15.72 9.83 -51.36 -0.50 -16.23 16 15 C 0.19 9.69 2.15 29.85 0.06 9.75 16 16 H 0.03 1.47 6.22 -2.39 -0.01 1.45 16 17 C -0.16 -7.22 9.03 71.98 0.65 -6.57 16 18 C -0.54 -31.39 9.48 25.60 0.24 -31.15 16 19 H 0.05 3.26 8.06 -2.91 -0.02 3.24 16 20 C 0.03 1.89 5.45 84.65 0.46 2.35 16 21 N -0.93 -56.41 13.96 21.45 0.30 -56.11 16 22 Si 0.94 44.19 24.37 68.60 1.67 45.86 16 23 H -0.25 -10.79 6.87 99.48 0.68 -10.10 16 24 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 25 H -0.26 -12.20 6.53 99.48 0.65 -11.55 16 26 H 0.07 1.14 8.08 -2.39 -0.02 1.12 16 27 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.11 1.92 8.14 -2.38 -0.02 1.90 16 29 H 0.10 2.82 8.06 -2.39 -0.02 2.80 16 30 H 0.08 2.26 8.09 -2.39 -0.02 2.24 16 31 H 0.12 2.61 8.06 -2.91 -0.02 2.59 16 32 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 33 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 34 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 35 H 0.13 2.48 8.06 -2.91 -0.02 2.46 16 36 H 0.06 2.46 3.27 -2.39 -0.01 2.46 16 37 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 39 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -70.40 330.49 6.03 -64.37 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.95 Total: 14.97 kcal Atomic # 6 Polarization: -21.41 SS G_CDS: 4.38 Total: -17.03 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: 0.30 Total: -56.11 kcal Atomic # 8 Polarization: -50.77 SS G_CDS: -1.28 Total: -52.05 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.67 Total: 45.86 kcal Total: -70.40 6.03 -64.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835161664.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.692 kcal (2) G-P(sol) polarization free energy of solvation -70.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds