Wall clock time and date at job start Mon Mar 30 2020 23:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42908 * 113.99952 * 2 1 4 4 H 1.09001 * 109.46933 * 29.99095 * 3 2 1 5 5 C 1.52994 * 109.47074 * 149.99875 * 3 2 1 6 6 C 1.50707 * 109.47239 * 294.99492 * 5 3 2 7 7 C 1.38236 * 119.99604 * 90.00175 * 6 5 3 8 8 C 1.38234 * 119.99411 * 179.97438 * 7 6 5 9 9 C 1.38238 * 120.00391 * 359.97438 * 8 7 6 10 10 C 1.38227 * 119.99840 * 0.27764 * 9 8 7 11 11 C 1.38234 * 119.99901 * 269.98320 * 6 5 3 12 12 C 1.50700 * 109.46676 * 269.99874 * 3 2 1 13 13 O 1.20823 * 119.99947 * 354.99485 * 12 3 2 14 14 O 1.34230 * 119.99774 * 175.00371 * 12 3 2 15 15 C 1.45205 * 116.99736 * 179.97438 * 14 12 3 16 16 H 1.09001 * 109.47204 * 29.99401 * 15 14 12 17 17 C 1.52994 * 109.46747 * 269.99391 * 15 14 12 18 18 C 1.50698 * 109.46692 * 149.99660 * 15 14 12 19 19 H 1.07994 * 120.00424 * 35.00124 * 18 15 14 20 20 C 1.37880 * 119.99751 * 214.99203 * 18 15 14 21 21 N 1.31513 * 120.00275 * 184.91639 * 20 18 15 22 22 Si 1.86803 * 119.99928 * 4.91840 * 20 18 15 23 23 H 1.48500 * 109.47043 * 84.83226 * 22 20 18 24 24 H 1.48495 * 109.47001 * 204.83330 * 22 20 18 25 25 H 1.48504 * 109.47008 * 324.83361 * 22 20 18 26 26 H 1.08993 * 109.47265 * 300.00434 * 1 2 3 27 27 H 1.09001 * 109.46923 * 60.00807 * 1 2 3 28 28 H 1.09003 * 109.47134 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46800 * 175.00034 * 5 3 2 30 30 H 1.08990 * 109.47553 * 54.99660 * 5 3 2 31 31 H 1.07991 * 120.00207 * 359.97438 * 7 6 5 32 32 H 1.08001 * 119.99826 * 179.97438 * 8 7 6 33 33 H 1.07998 * 119.99648 * 180.02562 * 9 8 7 34 34 H 1.07996 * 120.00335 * 179.72709 * 10 9 8 35 35 H 1.08001 * 120.00061 * 359.97438 * 11 6 5 36 36 H 1.08996 * 109.47557 * 295.03606 * 17 15 14 37 37 H 1.09001 * 109.47458 * 55.03715 * 17 15 14 38 38 H 1.09007 * 109.47247 * 175.03687 * 17 15 14 39 39 H 0.96998 * 120.00181 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9995 0.5137 5 6 3.3588 1.2633 0.7212 6 6 3.1415 0.9238 2.1734 7 6 3.1430 -0.3968 2.5821 8 6 2.9442 -0.7081 3.9141 9 6 2.7444 0.3010 4.8376 10 6 2.7378 1.6212 4.4280 11 6 2.9411 1.9329 3.0966 12 6 2.2145 1.7643 -1.4209 13 8 1.9801 1.0133 -2.3378 14 8 2.6571 3.0073 -1.6677 15 6 2.8312 3.3807 -3.0600 16 1 2.1151 2.8353 -3.6748 17 6 4.2534 3.0358 -3.5064 18 6 2.6013 4.8619 -3.2154 19 1 2.9013 5.5402 -2.4304 20 6 2.0080 5.3511 -4.3598 21 7 1.8947 6.6491 -4.5386 22 14 1.3649 4.1702 -5.6565 23 1 -0.0093 3.7387 -5.2951 24 1 1.3392 4.8503 -6.9763 25 1 2.2537 2.9826 -5.7288 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 3.8426 2.2371 0.6443 30 1 3.9930 0.5053 0.2619 31 1 3.2995 -1.1851 1.8608 32 1 2.9450 -1.7399 4.2334 33 1 2.5895 0.0576 5.8783 34 1 2.5773 2.4094 5.1487 35 1 2.9406 2.9646 2.7774 36 1 4.9663 3.6463 -2.9523 37 1 4.4497 1.9814 -3.3119 38 1 4.3575 3.2339 -4.5732 39 1 1.4777 6.9932 -5.3438 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835161670.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:00 Heat of formation + Delta-G solvation = -115.347093 kcal Electronic energy + Delta-G solvation = -21620.334923 eV Core-core repulsion = 18299.996094 eV Total energy + Delta-G solvation = -3320.338829 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.12378 -39.18060 -37.64816 -35.63034 -33.59539 -33.01806 -30.93151 -30.72300 -29.36236 -26.37969 -25.44687 -24.83144 -22.59952 -21.66218 -21.03279 -19.67954 -17.75206 -17.05347 -16.89044 -16.37458 -15.89853 -15.60112 -14.99701 -14.94201 -14.62303 -14.43905 -13.73353 -13.44560 -13.18142 -12.96474 -12.68084 -12.64420 -12.35384 -12.25176 -11.89241 -11.62811 -11.22587 -11.14957 -11.07919 -11.01000 -10.91852 -10.73915 -10.46516 -9.96834 -9.59525 -9.30967 -9.14847 -8.95900 -8.76313 -8.72058 -6.31131 -4.35142 1.26786 1.36218 2.79060 3.15487 3.26293 3.28623 3.32264 3.75035 3.85087 4.23110 4.69958 4.81940 4.93057 5.01225 5.03380 5.05798 5.11975 5.34747 5.39372 5.44505 5.47092 5.57940 5.66093 5.72084 5.85168 6.02097 6.04624 6.14655 6.39610 6.40935 6.45044 6.47971 6.60122 6.65860 6.94807 7.01235 7.12298 7.33700 7.48710 8.20306 8.59950 8.79064 9.28060 10.80087 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027169 B = 0.004223 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.324084 B = 6628.357997 C = 7030.925613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.355 6.355 3 C 0.105 3.895 4 H 0.096 0.904 5 C -0.074 4.074 6 C -0.076 4.076 7 C -0.099 4.099 8 C -0.124 4.124 9 C -0.126 4.126 10 C -0.123 4.123 11 C -0.115 4.115 12 C 0.426 3.574 13 O -0.511 6.511 14 O -0.347 6.347 15 C 0.181 3.819 16 H 0.046 0.954 17 C -0.153 4.153 18 C -0.519 4.519 19 H 0.086 0.914 20 C 0.083 3.917 21 N -0.881 5.881 22 Si 0.869 3.131 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.261 1.261 26 H 0.043 0.957 27 H 0.046 0.954 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.126 0.874 36 H 0.058 0.942 37 H 0.030 0.970 38 H 0.061 0.939 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.459 -12.370 15.771 20.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C 0.045 3.955 4 H 0.114 0.886 5 C -0.111 4.111 6 C -0.076 4.076 7 C -0.117 4.117 8 C -0.143 4.143 9 C -0.144 4.144 10 C -0.141 4.141 11 C -0.133 4.133 12 C 0.268 3.732 13 O -0.400 6.400 14 O -0.263 6.263 15 C 0.128 3.872 16 H 0.064 0.936 17 C -0.210 4.210 18 C -0.556 4.556 19 H 0.104 0.896 20 C -0.122 4.122 21 N -0.517 5.517 22 Si 0.695 3.305 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.185 1.185 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.107 0.893 29 H 0.122 0.878 30 H 0.105 0.895 31 H 0.142 0.858 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.144 0.856 36 H 0.077 0.923 37 H 0.049 0.951 38 H 0.080 0.920 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.449 -12.563 15.321 19.818 hybrid contribution -0.721 -0.331 -0.947 1.235 sum -0.272 -12.894 14.374 19.312 Atomic orbital electron populations 1.22863 0.80629 1.03024 1.00253 1.87960 1.20139 1.24944 1.94204 1.21632 0.97215 0.86540 0.90123 0.88614 1.20661 0.94601 1.04748 0.91080 1.19727 0.99732 0.93549 0.94643 1.21104 0.98789 0.96028 0.95750 1.21134 1.00595 0.99129 0.93395 1.21127 1.00791 0.93120 0.99369 1.21118 1.00548 0.96470 0.95927 1.21179 0.99682 0.99356 0.93093 1.24223 0.74658 0.81910 0.92429 1.90593 1.47604 1.55143 1.46660 1.86667 1.74864 1.29033 1.35727 1.21010 0.94161 0.96529 0.75478 0.93649 1.22233 0.98764 0.98507 1.01542 1.20796 1.41100 0.88495 1.05193 0.89588 1.24908 0.94267 0.95207 0.97813 1.69850 1.42460 1.11752 1.27688 0.86971 0.80602 0.81645 0.81302 1.19628 1.20639 1.18499 0.93858 0.93537 0.89303 0.87761 0.89478 0.85795 0.86316 0.86451 0.86169 0.85607 0.92308 0.95112 0.91989 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.81 101.05 1.09 1.46 16 2 O -0.35 -5.44 9.38 -55.14 -0.52 -5.95 16 3 C 0.10 1.63 2.61 -27.89 -0.07 1.55 16 4 H 0.10 1.35 7.79 -51.93 -0.40 0.94 16 5 C -0.07 -0.97 5.04 -27.88 -0.14 -1.11 16 6 C -0.08 -0.91 4.97 -104.62 -0.52 -1.43 16 7 C -0.10 -1.11 9.40 -39.58 -0.37 -1.48 16 8 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 9 C -0.13 -1.19 10.05 -39.59 -0.40 -1.58 16 10 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 11 C -0.12 -1.27 9.70 -39.58 -0.38 -1.66 16 12 C 0.43 8.70 7.22 36.01 0.26 8.96 16 13 O -0.51 -11.89 15.72 -25.46 -0.40 -12.29 16 14 O -0.35 -7.87 9.83 -39.26 -0.39 -8.25 16 15 C 0.18 4.54 2.22 -27.89 -0.06 4.48 16 16 H 0.05 1.20 4.31 -51.93 -0.22 0.98 16 17 C -0.15 -3.40 9.53 37.15 0.35 -3.04 16 18 C -0.52 -14.61 9.25 -34.44 -0.32 -14.93 16 19 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 20 C 0.08 2.34 5.47 -17.82 -0.10 2.25 16 21 N -0.88 -26.02 13.96 55.43 0.77 -25.25 16 22 Si 0.87 21.46 26.99 -169.99 -4.59 16.87 16 23 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.26 -6.32 6.82 56.52 0.39 -5.93 16 26 H 0.04 0.47 8.08 -51.93 -0.42 0.05 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.10 1.34 8.06 -51.93 -0.42 0.92 16 30 H 0.09 1.14 8.08 -51.93 -0.42 0.72 16 31 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 32 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 33 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 1.36 8.14 -51.92 -0.42 0.93 16 39 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 336.96 15.07 5.08 5.08 Total: -1.00 -32.10 336.96 -7.18 -39.29 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -5.69 Total: 0.29 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -1.45 Total: -9.77 kcal Atomic # 7 Polarization: -26.02 SS G_CDS: 0.77 Total: -25.25 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -1.30 Total: -26.50 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.59 Total: 16.87 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.10 -7.18 -39.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835161670.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.062 kcal (2) G-P(sol) polarization free energy of solvation -32.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds