Wall clock time and date at job start Mon Mar 30 2020 23:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42908 * 113.99952 * 2 1 4 4 H 1.09001 * 109.46933 * 29.99095 * 3 2 1 5 5 C 1.52994 * 109.47074 * 149.99875 * 3 2 1 6 6 C 1.50707 * 109.47239 * 294.99492 * 5 3 2 7 7 C 1.38236 * 119.99604 * 90.00175 * 6 5 3 8 8 C 1.38234 * 119.99411 * 179.97438 * 7 6 5 9 9 C 1.38238 * 120.00391 * 359.97438 * 8 7 6 10 10 C 1.38227 * 119.99840 * 0.27764 * 9 8 7 11 11 C 1.38234 * 119.99901 * 269.98320 * 6 5 3 12 12 C 1.50700 * 109.46676 * 269.99874 * 3 2 1 13 13 O 1.20823 * 119.99947 * 354.99485 * 12 3 2 14 14 O 1.34230 * 119.99774 * 175.00371 * 12 3 2 15 15 C 1.45205 * 116.99736 * 179.97438 * 14 12 3 16 16 H 1.09001 * 109.47204 * 29.99401 * 15 14 12 17 17 C 1.52994 * 109.46747 * 269.99391 * 15 14 12 18 18 C 1.50698 * 109.46692 * 149.99660 * 15 14 12 19 19 H 1.07994 * 120.00424 * 35.00124 * 18 15 14 20 20 C 1.37880 * 119.99751 * 214.99203 * 18 15 14 21 21 N 1.31513 * 120.00275 * 184.91639 * 20 18 15 22 22 Si 1.86803 * 119.99928 * 4.91840 * 20 18 15 23 23 H 1.48500 * 109.47043 * 84.83226 * 22 20 18 24 24 H 1.48495 * 109.47001 * 204.83330 * 22 20 18 25 25 H 1.48504 * 109.47008 * 324.83361 * 22 20 18 26 26 H 1.08993 * 109.47265 * 300.00434 * 1 2 3 27 27 H 1.09001 * 109.46923 * 60.00807 * 1 2 3 28 28 H 1.09003 * 109.47134 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46800 * 175.00034 * 5 3 2 30 30 H 1.08990 * 109.47553 * 54.99660 * 5 3 2 31 31 H 1.07991 * 120.00207 * 359.97438 * 7 6 5 32 32 H 1.08001 * 119.99826 * 179.97438 * 8 7 6 33 33 H 1.07998 * 119.99648 * 180.02562 * 9 8 7 34 34 H 1.07996 * 120.00335 * 179.72709 * 10 9 8 35 35 H 1.08001 * 120.00061 * 359.97438 * 11 6 5 36 36 H 1.08996 * 109.47557 * 295.03606 * 17 15 14 37 37 H 1.09001 * 109.47458 * 55.03715 * 17 15 14 38 38 H 1.09007 * 109.47247 * 175.03687 * 17 15 14 39 39 H 0.96998 * 120.00181 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9995 0.5137 5 6 3.3588 1.2633 0.7212 6 6 3.1415 0.9238 2.1734 7 6 3.1430 -0.3968 2.5821 8 6 2.9442 -0.7081 3.9141 9 6 2.7444 0.3010 4.8376 10 6 2.7378 1.6212 4.4280 11 6 2.9411 1.9329 3.0966 12 6 2.2145 1.7643 -1.4209 13 8 1.9801 1.0133 -2.3378 14 8 2.6571 3.0073 -1.6677 15 6 2.8312 3.3807 -3.0600 16 1 2.1151 2.8353 -3.6748 17 6 4.2534 3.0358 -3.5064 18 6 2.6013 4.8619 -3.2154 19 1 2.9013 5.5402 -2.4304 20 6 2.0080 5.3511 -4.3598 21 7 1.8947 6.6491 -4.5386 22 14 1.3649 4.1702 -5.6565 23 1 -0.0093 3.7387 -5.2951 24 1 1.3392 4.8503 -6.9763 25 1 2.2537 2.9826 -5.7288 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 3.8426 2.2371 0.6443 30 1 3.9930 0.5053 0.2619 31 1 3.2995 -1.1851 1.8608 32 1 2.9450 -1.7399 4.2334 33 1 2.5895 0.0576 5.8783 34 1 2.5773 2.4094 5.1487 35 1 2.9406 2.9646 2.7774 36 1 4.9663 3.6463 -2.9523 37 1 4.4497 1.9814 -3.3119 38 1 4.3575 3.2339 -4.5732 39 1 1.4777 6.9932 -5.3438 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835161670.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:00 Heat of formation + Delta-G solvation = -132.994082 kcal Electronic energy + Delta-G solvation = -21621.100154 eV Core-core repulsion = 18299.996094 eV Total energy + Delta-G solvation = -3321.104060 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.66316 -40.16212 -38.92021 -37.38674 -35.25509 -34.44501 -32.63031 -31.69257 -30.44800 -27.50592 -27.40249 -26.06333 -23.37738 -23.30909 -22.00825 -21.39562 -19.57905 -18.74140 -18.05141 -17.70751 -17.35439 -16.94995 -16.32143 -16.00195 -15.83757 -15.75438 -15.17974 -14.75595 -14.56846 -14.31596 -14.18898 -13.90330 -13.66862 -13.55090 -13.24483 -13.04793 -12.94121 -12.77093 -12.62124 -12.24145 -12.10137 -11.94868 -11.77285 -11.72722 -11.48270 -11.24396 -10.90675 -10.70178 -9.73508 -9.57592 -8.49326 -6.58737 0.45552 0.58736 1.17319 1.22598 1.26487 1.36612 1.74406 2.16996 2.63925 2.87856 2.94135 3.60416 3.82303 3.92549 4.02434 4.08726 4.19965 4.25300 4.37541 4.41432 4.44445 4.48894 4.55601 4.59949 4.70490 4.74836 4.85436 4.85564 4.88544 5.19241 5.25797 5.28446 5.35762 5.59242 5.64983 5.70009 5.75743 5.87688 6.13074 6.19444 6.50037 6.85124 7.09037 8.65810 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027169 B = 0.004223 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.324084 B = 6628.357997 C = 7030.925613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.363 6.363 3 C 0.115 3.885 4 H 0.112 0.888 5 C -0.067 4.067 6 C -0.090 4.090 7 C -0.110 4.110 8 C -0.128 4.128 9 C -0.125 4.125 10 C -0.127 4.127 11 C -0.127 4.127 12 C 0.424 3.576 13 O -0.540 6.540 14 O -0.354 6.354 15 C 0.181 3.819 16 H 0.034 0.966 17 C -0.147 4.147 18 C -0.530 4.530 19 H 0.052 0.948 20 C 0.038 3.962 21 N -0.920 5.920 22 Si 0.925 3.075 23 H -0.270 1.270 24 H -0.265 1.265 25 H -0.253 1.253 26 H 0.064 0.936 27 H 0.027 0.973 28 H 0.111 0.889 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.123 0.877 32 H 0.140 0.860 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.129 0.871 36 H 0.065 0.935 37 H 0.045 0.955 38 H 0.064 0.936 39 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.178 -14.095 17.134 22.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.280 6.280 3 C 0.055 3.945 4 H 0.130 0.870 5 C -0.104 4.104 6 C -0.090 4.090 7 C -0.128 4.128 8 C -0.146 4.146 9 C -0.143 4.143 10 C -0.145 4.145 11 C -0.145 4.145 12 C 0.267 3.733 13 O -0.431 6.431 14 O -0.270 6.270 15 C 0.128 3.872 16 H 0.051 0.949 17 C -0.205 4.205 18 C -0.567 4.567 19 H 0.070 0.930 20 C -0.164 4.164 21 N -0.558 5.558 22 Si 0.748 3.252 23 H -0.195 1.195 24 H -0.190 1.190 25 H -0.177 1.177 26 H 0.083 0.917 27 H 0.046 0.954 28 H 0.130 0.870 29 H 0.122 0.878 30 H 0.103 0.897 31 H 0.141 0.859 32 H 0.158 0.842 33 H 0.161 0.839 34 H 0.158 0.842 35 H 0.147 0.853 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.172 -14.295 16.701 21.984 hybrid contribution -0.652 0.181 -1.227 1.401 sum -0.479 -14.114 15.474 20.950 Atomic orbital electron populations 1.23076 0.79339 1.04658 1.00322 1.87965 1.21614 1.24608 1.93855 1.21744 0.98971 0.87023 0.86755 0.87002 1.20602 0.93086 1.04710 0.92048 1.19614 1.01397 0.94237 0.93713 1.21204 0.99298 0.95700 0.96627 1.21418 0.99824 1.00495 0.92820 1.21484 0.99465 0.92750 1.00616 1.21413 0.99865 0.97487 0.95741 1.21328 1.00025 0.99409 0.93737 1.25297 0.73111 0.80537 0.94335 1.90569 1.48857 1.55558 1.48136 1.86630 1.75464 1.30747 1.34159 1.20833 0.95432 0.94425 0.76553 0.94858 1.22143 0.97038 0.99605 1.01709 1.20909 1.41350 0.89905 1.04576 0.92980 1.25611 0.94361 0.96619 0.99770 1.69945 1.43610 1.13439 1.28823 0.86080 0.79925 0.79878 0.79336 1.19520 1.18957 1.17739 0.91728 0.95440 0.87025 0.87820 0.89744 0.85940 0.84244 0.83918 0.84202 0.85303 0.91564 0.93555 0.91752 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 10.81 113.37 1.23 1.75 16 2 O -0.36 -10.65 9.38 -129.95 -1.22 -11.87 16 3 C 0.12 3.47 2.61 29.85 0.08 3.55 16 4 H 0.11 3.02 7.79 -2.39 -0.02 3.00 16 5 C -0.07 -1.73 5.04 29.85 0.15 -1.58 16 6 C -0.09 -2.02 4.97 -19.86 -0.10 -2.12 16 7 C -0.11 -2.30 9.40 22.27 0.21 -2.09 16 8 C -0.13 -2.19 10.05 22.27 0.22 -1.96 16 9 C -0.13 -1.97 10.05 22.27 0.22 -1.75 16 10 C -0.13 -2.19 10.05 22.27 0.22 -1.96 16 11 C -0.13 -2.61 9.70 22.27 0.22 -2.39 16 12 C 0.42 17.21 7.22 71.24 0.51 17.72 16 13 O -0.54 -25.06 15.72 28.39 0.45 -24.61 16 14 O -0.35 -16.15 9.83 -51.42 -0.51 -16.65 16 15 C 0.18 9.11 2.22 29.85 0.07 9.17 16 16 H 0.03 1.76 4.31 -2.39 -0.01 1.75 16 17 C -0.15 -6.45 9.53 71.98 0.69 -5.76 16 18 C -0.53 -30.50 9.25 25.60 0.24 -30.26 16 19 H 0.05 3.27 8.06 -2.91 -0.02 3.25 16 20 C 0.04 2.16 5.47 84.66 0.46 2.62 16 21 N -0.92 -55.21 13.96 21.45 0.30 -54.92 16 22 Si 0.92 44.11 26.99 68.60 1.85 45.96 16 23 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 24 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 25 H -0.25 -11.71 6.82 99.48 0.68 -11.03 16 26 H 0.06 1.26 8.08 -2.39 -0.02 1.24 16 27 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.10 2.63 8.06 -2.39 -0.02 2.61 16 30 H 0.08 2.18 8.08 -2.39 -0.02 2.16 16 31 H 0.12 2.51 8.06 -2.92 -0.02 2.49 16 32 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 33 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 34 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 35 H 0.13 2.47 8.06 -2.91 -0.02 2.44 16 36 H 0.07 2.75 8.14 -2.39 -0.02 2.74 16 37 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.06 2.75 8.14 -2.38 -0.02 2.73 16 39 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -69.11 336.96 6.29 -62.83 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 1.00 Total: 14.33 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: 4.42 Total: -15.07 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: 0.30 Total: -54.92 kcal Atomic # 8 Polarization: -51.86 SS G_CDS: -1.28 Total: -53.13 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.85 Total: 45.96 kcal Total: -69.11 6.29 -62.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835161670.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.168 kcal (2) G-P(sol) polarization free energy of solvation -69.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds