Wall clock time and date at job start Mon Mar 30 2020 23:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 H 1.08994 * 109.46677 * 29.99907 * 3 2 1 5 5 C 1.53001 * 109.47018 * 270.00354 * 3 2 1 6 6 C 1.50695 * 109.47282 * 64.99950 * 5 3 2 7 7 C 1.38245 * 119.99934 * 269.72707 * 6 5 3 8 8 C 1.38237 * 119.99984 * 179.76847 * 7 6 5 9 9 C 1.38236 * 119.99504 * 0.50490 * 8 7 6 10 10 C 1.38230 * 120.00395 * 359.74413 * 9 8 7 11 11 C 1.38232 * 120.00255 * 90.00111 * 6 5 3 12 12 C 1.50697 * 109.46859 * 150.00027 * 3 2 1 13 13 O 1.20820 * 120.00203 * 5.00324 * 12 3 2 14 14 O 1.34236 * 119.99645 * 184.99905 * 12 3 2 15 15 C 1.45198 * 116.99950 * 180.02562 * 14 12 3 16 16 C 1.52995 * 109.47147 * 180.02562 * 15 14 12 17 17 C 1.50703 * 109.47238 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99858 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00048 * 180.02562 * 17 16 15 20 20 N 1.31508 * 119.99876 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 119.99888 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.47292 * 90.00366 * 21 19 17 23 23 H 1.48501 * 109.47148 * 210.00057 * 21 19 17 24 24 H 1.48502 * 109.47619 * 330.00194 * 21 19 17 25 25 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 27 27 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 28 28 H 1.08996 * 109.47138 * 184.99951 * 5 3 2 29 29 H 1.09006 * 109.47195 * 304.99721 * 5 3 2 30 30 H 1.07996 * 119.99780 * 359.97438 * 7 6 5 31 31 H 1.07996 * 119.99701 * 180.22956 * 8 7 6 32 32 H 1.08004 * 119.99385 * 179.72705 * 9 8 7 33 33 H 1.08006 * 120.00253 * 179.97438 * 10 9 8 34 34 H 1.08001 * 119.99837 * 359.97438 * 11 6 5 35 35 H 1.08992 * 109.47083 * 300.00278 * 15 14 12 36 36 H 1.08999 * 109.46778 * 60.00312 * 15 14 12 37 37 H 1.09004 * 109.46983 * 299.99825 * 16 15 14 38 38 H 1.08998 * 109.47048 * 59.99862 * 16 15 14 39 39 H 0.96997 * 120.00246 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 0.8792 1.9310 -2.1162 7 6 0.3139 0.8654 -2.7917 8 6 -0.9161 1.0104 -3.4056 9 6 -1.5760 2.2240 -3.3529 10 6 -1.0085 3.2909 -2.6819 11 6 0.2192 3.1444 -2.0636 12 6 3.3387 1.2637 0.7104 13 8 3.7880 0.2083 1.0899 14 8 4.0228 2.3993 0.9215 15 6 5.2951 2.2837 1.6114 16 6 5.9227 3.6711 1.7597 17 6 7.2436 3.5511 2.4752 18 1 7.5997 2.5822 2.7928 19 6 7.9971 4.6784 2.7253 20 7 9.1500 4.5736 3.3492 21 14 7.3810 6.3543 2.1765 22 1 6.5664 6.9613 3.2598 23 1 8.5394 7.2337 1.8764 24 1 6.5473 6.2005 0.9573 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 2.7414 2.7273 -1.4438 29 1 2.8100 1.0319 -1.9816 30 1 0.8318 -0.0812 -2.8369 31 1 -1.3594 0.1769 -3.9302 32 1 -2.5350 2.3385 -3.8364 33 1 -1.5239 4.2391 -2.6411 34 1 0.6626 3.9780 -1.5393 35 1 5.1351 1.8503 2.5986 36 1 5.9630 1.6420 1.0368 37 1 6.0827 4.1049 0.7725 38 1 5.2547 4.3125 2.3344 39 1 9.6800 5.3667 3.5255 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835265949.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:32 Heat of formation + Delta-G solvation = -110.311787 kcal Electronic energy + Delta-G solvation = -21100.776104 eV Core-core repulsion = 17780.655622 eV Total energy + Delta-G solvation = -3320.120482 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.53816 -39.59458 -37.84449 -36.05947 -33.60882 -33.24034 -31.24355 -30.90624 -29.86044 -26.54469 -25.73545 -24.33818 -22.85888 -21.47363 -20.89587 -20.52809 -17.77255 -17.19787 -16.90716 -16.76120 -16.25433 -15.74824 -15.50773 -15.23634 -15.14331 -14.25713 -14.03169 -13.68852 -13.62932 -13.27400 -13.01757 -12.86773 -12.68909 -12.42140 -12.07285 -11.52680 -11.46732 -11.37693 -11.27787 -11.10655 -10.71820 -10.53170 -10.26761 -9.97832 -9.82917 -9.72785 -9.36565 -9.17029 -8.76579 -8.63972 -6.14256 -4.15676 1.01774 1.11005 2.42823 2.62323 3.26387 3.33883 3.37615 3.48153 3.87541 4.36960 4.43846 4.59763 4.70429 4.74583 4.82046 4.87608 5.04997 5.12872 5.19154 5.19525 5.23821 5.27596 5.43529 5.53343 5.62425 5.78271 5.83307 5.94204 5.95074 6.18016 6.23457 6.34089 6.42161 6.70246 6.72188 6.83158 7.16189 7.19473 7.60654 8.10243 8.38242 8.87577 9.45015 10.98369 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024593 B = 0.003566 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.263230 B = 7850.742520 C = 8727.892403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.357 6.357 3 C 0.107 3.893 4 H 0.098 0.902 5 C -0.101 4.101 6 C -0.084 4.084 7 C -0.105 4.105 8 C -0.125 4.125 9 C -0.123 4.123 10 C -0.120 4.120 11 C -0.114 4.114 12 C 0.455 3.545 13 O -0.491 6.491 14 O -0.359 6.359 15 C 0.083 3.917 16 C -0.009 4.009 17 C -0.528 4.528 18 H 0.076 0.924 19 C 0.072 3.928 20 N -0.897 5.897 21 Si 0.882 3.118 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.263 1.263 25 H 0.089 0.911 26 H 0.063 0.937 27 H 0.041 0.959 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.126 0.874 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.127 0.873 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.029 0.971 38 H 0.024 0.976 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.474 -4.092 -13.427 27.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.275 6.275 3 C 0.047 3.953 4 H 0.115 0.885 5 C -0.139 4.139 6 C -0.084 4.084 7 C -0.123 4.123 8 C -0.143 4.143 9 C -0.141 4.141 10 C -0.138 4.138 11 C -0.132 4.132 12 C 0.296 3.704 13 O -0.377 6.377 14 O -0.276 6.276 15 C 0.010 3.990 16 C -0.046 4.046 17 C -0.566 4.566 18 H 0.094 0.906 19 C -0.130 4.130 20 N -0.535 5.535 21 Si 0.708 3.292 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.188 1.188 25 H 0.107 0.893 26 H 0.081 0.919 27 H 0.060 0.940 28 H 0.119 0.881 29 H 0.108 0.892 30 H 0.144 0.856 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.145 0.855 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.047 0.953 38 H 0.042 0.958 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -23.013 -4.467 -13.215 26.911 hybrid contribution -0.301 0.992 -0.081 1.039 sum -23.314 -3.476 -13.295 27.063 Atomic orbital electron populations 1.23282 0.80307 1.03366 1.01280 1.87998 1.20010 1.24661 1.94856 1.21379 0.91451 0.87173 0.95249 0.88470 1.21107 0.95048 1.04194 0.93514 1.19782 0.96109 0.93979 0.98534 1.21127 0.95661 0.98712 0.96808 1.21164 0.95377 0.97722 1.00006 1.21176 0.99998 0.93338 0.99548 1.21163 0.95715 0.98951 0.97989 1.21178 0.95274 0.97151 0.99637 1.23112 0.86592 0.82889 0.77795 1.90665 1.68422 1.31685 1.46973 1.86453 1.35760 1.34461 1.70937 1.23433 0.78456 1.01794 0.95271 1.19628 0.96093 0.90812 0.98067 1.20844 1.01787 0.96157 1.37818 0.90619 1.24937 0.94551 0.99207 0.94313 1.69892 1.12552 1.29952 1.41069 0.86748 0.78654 0.83862 0.79910 1.20056 1.21157 1.18752 0.89282 0.91927 0.94021 0.88084 0.89189 0.85573 0.86000 0.86187 0.85970 0.85541 0.91610 0.91522 0.95320 0.95786 0.92406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 10.24 101.05 1.03 1.17 16 2 O -0.36 -4.81 9.75 -55.14 -0.54 -5.34 16 3 C 0.11 1.39 2.84 -27.88 -0.08 1.31 16 4 H 0.10 1.08 7.79 -51.93 -0.40 0.67 16 5 C -0.10 -1.12 5.04 -27.89 -0.14 -1.26 16 6 C -0.08 -0.81 3.87 -104.62 -0.41 -1.21 16 7 C -0.11 -0.93 6.83 -39.58 -0.27 -1.20 16 8 C -0.12 -0.95 9.94 -39.58 -0.39 -1.34 16 9 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 10 C -0.12 -0.94 10.05 -39.59 -0.40 -1.34 16 11 C -0.11 -1.01 9.70 -39.58 -0.38 -1.40 16 12 C 0.46 7.92 7.29 36.00 0.26 8.18 16 13 O -0.49 -10.19 16.25 -25.46 -0.41 -10.60 16 14 O -0.36 -6.68 10.19 -39.27 -0.40 -7.08 16 15 C 0.08 1.77 5.40 37.15 0.20 1.97 16 16 C -0.01 -0.20 4.42 -27.88 -0.12 -0.33 16 17 C -0.53 -14.96 9.66 -34.44 -0.33 -15.29 16 18 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 19 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 20 N -0.90 -27.30 13.96 55.43 0.77 -26.52 16 21 Si 0.88 21.21 27.47 -169.99 -4.67 16.54 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 24 H -0.26 -6.05 6.54 56.52 0.37 -5.68 16 25 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.55 3.85 -51.93 -0.20 0.35 16 27 H 0.04 0.37 8.09 -51.93 -0.42 -0.05 16 28 H 0.10 1.08 8.06 -51.93 -0.42 0.67 16 29 H 0.09 1.02 8.08 -51.93 -0.42 0.60 16 30 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 32 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 33 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 34 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 35 H 0.07 1.42 8.13 -51.93 -0.42 1.00 16 36 H 0.07 1.43 8.13 -51.93 -0.42 1.01 16 37 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 38 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 39 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 330.81 15.07 4.99 4.99 Total: -1.00 -32.72 330.81 -7.38 -40.10 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -5.60 Total: -2.02 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -1.52 Total: -10.05 kcal Atomic # 7 Polarization: -27.30 SS G_CDS: 0.77 Total: -26.52 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -1.35 Total: -23.03 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.72 -7.38 -40.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835265949.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.214 kcal (2) G-P(sol) polarization free energy of solvation -32.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds