Wall clock time and date at job start Mon Mar 30 2020 23:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 H 1.08994 * 109.46677 * 29.99907 * 3 2 1 5 5 C 1.53001 * 109.47018 * 270.00354 * 3 2 1 6 6 C 1.50695 * 109.47282 * 64.99950 * 5 3 2 7 7 C 1.38245 * 119.99934 * 269.72707 * 6 5 3 8 8 C 1.38237 * 119.99984 * 179.76847 * 7 6 5 9 9 C 1.38236 * 119.99504 * 0.50490 * 8 7 6 10 10 C 1.38230 * 120.00395 * 359.74413 * 9 8 7 11 11 C 1.38232 * 120.00255 * 90.00111 * 6 5 3 12 12 C 1.50697 * 109.46859 * 150.00027 * 3 2 1 13 13 O 1.20820 * 120.00203 * 5.00324 * 12 3 2 14 14 O 1.34236 * 119.99645 * 184.99905 * 12 3 2 15 15 C 1.45198 * 116.99950 * 180.02562 * 14 12 3 16 16 C 1.52995 * 109.47147 * 180.02562 * 15 14 12 17 17 C 1.50703 * 109.47238 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99858 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00048 * 180.02562 * 17 16 15 20 20 N 1.31508 * 119.99876 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 119.99888 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.47292 * 90.00366 * 21 19 17 23 23 H 1.48501 * 109.47148 * 210.00057 * 21 19 17 24 24 H 1.48502 * 109.47619 * 330.00194 * 21 19 17 25 25 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 27 27 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 28 28 H 1.08996 * 109.47138 * 184.99951 * 5 3 2 29 29 H 1.09006 * 109.47195 * 304.99721 * 5 3 2 30 30 H 1.07996 * 119.99780 * 359.97438 * 7 6 5 31 31 H 1.07996 * 119.99701 * 180.22956 * 8 7 6 32 32 H 1.08004 * 119.99385 * 179.72705 * 9 8 7 33 33 H 1.08006 * 120.00253 * 179.97438 * 10 9 8 34 34 H 1.08001 * 119.99837 * 359.97438 * 11 6 5 35 35 H 1.08992 * 109.47083 * 300.00278 * 15 14 12 36 36 H 1.08999 * 109.46778 * 60.00312 * 15 14 12 37 37 H 1.09004 * 109.46983 * 299.99825 * 16 15 14 38 38 H 1.08998 * 109.47048 * 59.99862 * 16 15 14 39 39 H 0.96997 * 120.00246 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 0.8792 1.9310 -2.1162 7 6 0.3139 0.8654 -2.7917 8 6 -0.9161 1.0104 -3.4056 9 6 -1.5760 2.2240 -3.3529 10 6 -1.0085 3.2909 -2.6819 11 6 0.2192 3.1444 -2.0636 12 6 3.3387 1.2637 0.7104 13 8 3.7880 0.2083 1.0899 14 8 4.0228 2.3993 0.9215 15 6 5.2951 2.2837 1.6114 16 6 5.9227 3.6711 1.7597 17 6 7.2436 3.5511 2.4752 18 1 7.5997 2.5822 2.7928 19 6 7.9971 4.6784 2.7253 20 7 9.1500 4.5736 3.3492 21 14 7.3810 6.3543 2.1765 22 1 6.5664 6.9613 3.2598 23 1 8.5394 7.2337 1.8764 24 1 6.5473 6.2005 0.9573 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 2.7414 2.7273 -1.4438 29 1 2.8100 1.0319 -1.9816 30 1 0.8318 -0.0812 -2.8369 31 1 -1.3594 0.1769 -3.9302 32 1 -2.5350 2.3385 -3.8364 33 1 -1.5239 4.2391 -2.6411 34 1 0.6626 3.9780 -1.5393 35 1 5.1351 1.8503 2.5986 36 1 5.9630 1.6420 1.0368 37 1 6.0827 4.1049 0.7725 38 1 5.2547 4.3125 2.3344 39 1 9.6800 5.3667 3.5255 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835265949.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:31 Heat of formation + Delta-G solvation = -128.915566 kcal Electronic energy + Delta-G solvation = -21101.582825 eV Core-core repulsion = 17780.655622 eV Total energy + Delta-G solvation = -3320.927202 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.79116 -40.49690 -38.81114 -37.59050 -35.42642 -34.31207 -32.81616 -31.82073 -30.81007 -27.49170 -27.24433 -25.61011 -23.44451 -22.78765 -22.24550 -21.83469 -19.34312 -18.62157 -18.13330 -17.93617 -17.36320 -17.08193 -16.51965 -16.30614 -15.91566 -15.82530 -15.27529 -15.13059 -14.66936 -14.27146 -14.16837 -13.86218 -13.68156 -13.57446 -13.29315 -13.15116 -12.86868 -12.54109 -12.48666 -12.16545 -12.02993 -11.81106 -11.79068 -11.56716 -11.47727 -11.41308 -10.95751 -10.81293 -9.76225 -9.45094 -8.34381 -6.43124 0.38520 0.52267 1.04556 1.31930 1.39101 1.41177 1.53724 2.34943 2.86293 2.87738 3.00609 3.42143 3.75612 3.84062 3.97959 4.01766 4.14828 4.17223 4.21226 4.34465 4.41386 4.47091 4.55298 4.60109 4.66275 4.78512 4.85056 4.86633 4.99167 5.14950 5.20758 5.28211 5.44521 5.51191 5.60652 5.66813 5.70502 5.92841 6.13177 6.15276 6.63027 6.64444 7.22017 8.81904 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024593 B = 0.003566 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.263230 B = 7850.742520 C = 8727.892403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.382 6.382 3 C 0.117 3.883 4 H 0.121 0.879 5 C -0.094 4.094 6 C -0.096 4.096 7 C -0.114 4.114 8 C -0.127 4.127 9 C -0.123 4.123 10 C -0.125 4.125 11 C -0.123 4.123 12 C 0.454 3.546 13 O -0.530 6.530 14 O -0.351 6.351 15 C 0.092 3.908 16 C -0.002 4.002 17 C -0.545 4.545 18 H 0.033 0.967 19 C 0.011 3.989 20 N -0.946 5.946 21 Si 0.956 3.044 22 H -0.262 1.262 23 H -0.281 1.281 24 H -0.241 1.241 25 H 0.102 0.898 26 H 0.073 0.927 27 H 0.050 0.950 28 H 0.103 0.897 29 H 0.080 0.920 30 H 0.123 0.877 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.133 0.867 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.039 0.961 38 H 0.037 0.963 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.540 -2.425 -15.099 30.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.301 6.301 3 C 0.057 3.943 4 H 0.139 0.861 5 C -0.132 4.132 6 C -0.096 4.096 7 C -0.132 4.132 8 C -0.145 4.145 9 C -0.140 4.140 10 C -0.143 4.143 11 C -0.141 4.141 12 C 0.297 3.703 13 O -0.418 6.418 14 O -0.268 6.268 15 C 0.019 3.981 16 C -0.039 4.039 17 C -0.582 4.582 18 H 0.051 0.949 19 C -0.187 4.187 20 N -0.585 5.585 21 Si 0.778 3.222 22 H -0.187 1.187 23 H -0.207 1.207 24 H -0.164 1.164 25 H 0.120 0.880 26 H 0.091 0.909 27 H 0.068 0.932 28 H 0.122 0.878 29 H 0.099 0.901 30 H 0.141 0.859 31 H 0.158 0.842 32 H 0.160 0.840 33 H 0.159 0.841 34 H 0.151 0.849 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -26.111 -2.815 -14.900 30.195 hybrid contribution 0.610 0.345 0.437 0.826 sum -25.502 -2.470 -14.463 29.421 Atomic orbital electron populations 1.23481 0.78260 1.04603 1.02179 1.87967 1.22193 1.24940 1.94991 1.21464 0.88950 0.87805 0.96046 0.86115 1.21023 0.96219 1.03842 0.92103 1.19655 0.95563 0.94819 0.99565 1.21189 0.96336 0.98477 0.97244 1.21412 0.94842 0.98629 0.99590 1.21506 1.00734 0.92914 0.98887 1.21440 0.95373 0.99978 0.97483 1.21330 0.95799 0.96983 0.99982 1.24155 0.87567 0.81755 0.76816 1.90649 1.69603 1.32870 1.48709 1.86441 1.34528 1.35249 1.70586 1.23011 0.79745 1.00247 0.95086 1.19462 0.94164 0.92318 0.97965 1.21125 1.04017 0.94704 1.38388 0.94851 1.25984 0.94500 1.04103 0.94127 1.70044 1.14254 1.31585 1.42635 0.85581 0.78532 0.77625 0.80491 1.18713 1.20703 1.16393 0.87986 0.90891 0.93184 0.87827 0.90092 0.85920 0.84173 0.83969 0.84144 0.84901 0.92515 0.92443 0.94278 0.94453 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 10.24 113.37 1.16 1.33 16 2 O -0.38 -9.92 9.75 -129.95 -1.27 -11.19 16 3 C 0.12 2.89 2.84 29.85 0.08 2.98 16 4 H 0.12 2.42 7.79 -2.39 -0.02 2.40 16 5 C -0.09 -1.98 5.04 29.85 0.15 -1.83 16 6 C -0.10 -1.68 3.87 -19.87 -0.08 -1.75 16 7 C -0.11 -1.82 6.83 22.27 0.15 -1.67 16 8 C -0.13 -1.59 9.94 22.27 0.22 -1.37 16 9 C -0.12 -1.40 10.05 22.27 0.22 -1.17 16 10 C -0.12 -1.57 10.05 22.27 0.22 -1.34 16 11 C -0.12 -1.88 9.70 22.27 0.22 -1.66 16 12 C 0.45 15.68 7.29 71.23 0.52 16.20 16 13 O -0.53 -22.39 16.25 28.40 0.46 -21.93 16 14 O -0.35 -12.82 10.19 -51.48 -0.52 -13.35 16 15 C 0.09 3.98 5.40 71.98 0.39 4.37 16 16 C 0.00 -0.08 4.42 29.85 0.13 0.05 16 17 C -0.54 -31.53 9.66 25.60 0.25 -31.28 16 18 H 0.03 2.14 7.99 -2.91 -0.02 2.11 16 19 C 0.01 0.62 5.47 84.66 0.46 1.09 16 20 N -0.95 -58.88 13.96 21.45 0.30 -58.58 16 21 Si 0.96 42.85 27.47 68.60 1.88 44.73 16 22 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 23 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 24 H -0.24 -9.87 6.54 99.48 0.65 -9.22 16 25 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.07 1.13 3.85 -2.39 -0.01 1.12 16 27 H 0.05 0.78 8.09 -2.38 -0.02 0.76 16 28 H 0.10 2.08 8.06 -2.39 -0.02 2.06 16 29 H 0.08 1.81 8.08 -2.38 -0.02 1.79 16 30 H 0.12 1.98 8.06 -2.91 -0.02 1.95 16 31 H 0.14 1.18 8.06 -2.91 -0.02 1.16 16 32 H 0.14 0.96 8.06 -2.91 -0.02 0.94 16 33 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 34 H 0.13 1.78 8.06 -2.91 -0.02 1.76 16 35 H 0.06 2.52 8.13 -2.39 -0.02 2.50 16 36 H 0.06 2.55 8.13 -2.39 -0.02 2.53 16 37 H 0.04 1.76 7.20 -2.38 -0.02 1.74 16 38 H 0.04 1.66 7.57 -2.39 -0.02 1.64 16 39 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -71.76 330.81 5.93 -65.83 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 0.97 Total: 10.54 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: 4.11 Total: -16.06 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: 0.30 Total: -58.58 kcal Atomic # 8 Polarization: -45.14 SS G_CDS: -1.33 Total: -46.47 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 1.88 Total: 44.73 kcal Total: -71.76 5.93 -65.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835265949.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.087 kcal (2) G-P(sol) polarization free energy of solvation -71.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds