Wall clock time and date at job start Mon Mar 30 2020 23:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42899 * 109.47433 * 2 1 4 4 C 1.35893 * 117.00392 * 179.97438 * 3 2 1 5 5 C 1.38736 * 120.05957 * 180.02562 * 4 3 2 6 6 C 1.38138 * 119.94337 * 180.30421 * 5 4 3 7 7 C 1.38270 * 120.05794 * 359.46080 * 6 5 4 8 8 C 1.50697 * 119.94421 * 180.26220 * 7 6 5 9 9 C 1.53002 * 109.46967 * 270.25509 * 8 7 6 10 10 H 1.08997 * 109.47073 * 304.99861 * 9 8 7 11 11 C 1.52993 * 109.47245 * 65.00386 * 9 8 7 12 12 C 1.50700 * 109.47249 * 184.99982 * 9 8 7 13 13 O 1.21218 * 119.99815 * 0.02562 * 12 9 8 14 14 O 1.34306 * 120.00317 * 179.97438 * 12 9 8 15 15 C 1.34918 * 117.00201 * 179.97438 * 14 12 9 16 16 H 1.07999 * 120.00495 * 0.02562 * 15 14 12 17 17 C 1.38759 * 120.00199 * 180.02562 * 15 14 12 18 18 N 1.31443 * 119.99477 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99972 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47453 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47044 * 120.00221 * 19 17 15 22 22 H 1.48504 * 109.46906 * 239.99604 * 19 17 15 23 23 C 1.38259 * 120.10998 * 0.51383 * 7 6 5 24 24 C 1.38146 * 120.05869 * 359.76954 * 23 7 6 25 25 H 1.08994 * 109.46893 * 300.00316 * 1 2 3 26 26 H 1.09001 * 109.46536 * 59.99754 * 1 2 3 27 27 H 1.08995 * 109.46775 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47184 * 240.00253 * 2 1 3 29 29 H 1.09001 * 109.46987 * 119.99960 * 2 1 3 30 30 H 1.08002 * 120.02291 * 0.02562 * 5 4 3 31 31 H 1.08004 * 119.96766 * 179.69880 * 6 5 4 32 32 H 1.08999 * 109.47575 * 30.25213 * 8 7 6 33 33 H 1.09002 * 109.47295 * 150.25537 * 8 7 6 34 34 H 1.08997 * 109.47513 * 59.99745 * 11 9 8 35 35 H 1.09003 * 109.47505 * 180.02562 * 11 9 8 36 36 H 1.09004 * 109.47003 * 299.99961 * 11 9 8 37 37 H 0.97000 * 119.99382 * 179.97438 * 18 17 15 38 38 H 1.08006 * 119.97187 * 179.74376 * 23 7 6 39 39 H 1.07993 * 120.03340 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3536 1.5253 0.0005 5 6 3.8852 2.8068 0.0011 6 6 5.2551 2.9850 -0.0047 7 6 6.0963 1.8877 0.0002 8 6 7.5902 2.0851 -0.0002 9 6 8.0954 2.1522 -1.4428 10 1 7.7747 1.2608 -1.9819 11 6 7.5228 3.3954 -2.1264 12 6 9.6006 2.2263 -1.4451 13 8 10.2090 2.2250 -0.3967 14 8 10.2680 2.2926 -2.6087 15 6 11.6139 2.3573 -2.5402 16 1 12.1064 2.3538 -1.5791 17 6 12.3653 2.4284 -3.7045 18 7 11.7658 2.4322 -4.8743 19 14 14.2287 2.5172 -3.6095 20 1 14.6534 2.4970 -2.1867 21 1 14.8166 1.3525 -4.3187 22 1 14.6975 3.7735 -4.2477 23 6 5.5690 0.6096 0.0002 24 6 4.1998 0.4259 0.0001 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.2285 3.6642 0.0015 31 1 5.6693 3.9825 -0.0092 32 1 7.8341 3.0149 0.5137 33 1 8.0672 1.2503 0.5134 34 1 7.8435 4.2868 -1.5874 35 1 7.8823 3.4430 -3.1544 36 1 6.4340 3.3419 -2.1248 37 1 12.2911 2.4823 -5.6882 38 1 6.2282 -0.2460 -0.0002 39 1 3.7885 -0.5727 -0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840653788.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:24 Heat of formation + Delta-G solvation = -112.507136 kcal Electronic energy + Delta-G solvation = -20791.594937 eV Core-core repulsion = 17471.379258 eV Total energy + Delta-G solvation = -3320.215679 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.29132 -39.15128 -37.93583 -35.46278 -34.05717 -32.17906 -32.01568 -30.94221 -29.81965 -26.19350 -25.53659 -24.15190 -23.27591 -21.95759 -20.98460 -19.18988 -18.35339 -17.67022 -16.65531 -16.30964 -16.03558 -15.20385 -14.87055 -14.68317 -14.39489 -14.24083 -13.73203 -13.60253 -13.53361 -13.14785 -12.88463 -12.84867 -12.27694 -11.99899 -11.86532 -11.69399 -11.58869 -11.19806 -11.07054 -10.97200 -10.86290 -10.57903 -10.56581 -10.37570 -10.30780 -9.72677 -9.00818 -8.87858 -8.54245 -8.05705 -6.37353 -4.04821 1.33718 1.41768 3.03315 3.12342 3.21062 3.28628 3.59307 3.72172 4.00038 4.56882 4.61340 4.62503 4.81079 4.87028 4.94357 5.14039 5.17206 5.17422 5.31243 5.38606 5.42189 5.45676 5.53536 5.66454 5.70479 5.76064 5.93743 6.11000 6.17944 6.23548 6.30114 6.36287 6.51670 6.62100 6.77896 6.78534 6.93260 7.33057 7.44218 8.00048 8.76889 9.11949 9.92186 10.80912 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.043801 B = 0.002907 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.106881 B = 9630.327428 C = 9735.371312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.320 6.320 4 C 0.118 3.882 5 C -0.151 4.151 6 C -0.074 4.074 7 C -0.106 4.106 8 C -0.060 4.060 9 C -0.068 4.068 10 H 0.093 0.907 11 C -0.143 4.143 12 C 0.402 3.598 13 O -0.558 6.558 14 O -0.213 6.213 15 C -0.381 4.381 16 H 0.095 0.905 17 C 0.041 3.959 18 N -0.866 5.866 19 Si 0.941 3.059 20 H -0.266 1.266 21 H -0.277 1.277 22 H -0.277 1.277 23 C -0.076 4.076 24 C -0.207 4.207 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.128 0.872 31 H 0.131 0.869 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.268 0.732 38 H 0.126 0.874 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.484 -3.315 7.729 21.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.234 6.234 4 C 0.074 3.926 5 C -0.170 4.170 6 C -0.092 4.092 7 C -0.106 4.106 8 C -0.097 4.097 9 C -0.087 4.087 10 H 0.111 0.889 11 C -0.200 4.200 12 C 0.248 3.752 13 O -0.456 6.456 14 O -0.120 6.120 15 C -0.457 4.457 16 H 0.112 0.888 17 C -0.163 4.163 18 N -0.504 5.504 19 Si 0.766 3.234 20 H -0.190 1.190 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.094 4.094 24 C -0.225 4.225 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.146 0.854 31 H 0.149 0.851 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.144 0.856 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -19.417 -3.167 7.750 21.145 hybrid contribution 0.991 -0.294 -0.068 1.035 sum -18.427 -3.461 7.683 20.262 Atomic orbital electron populations 1.21772 0.92881 1.02768 1.03466 1.22750 0.95723 0.82220 1.01401 1.86041 1.19338 1.29064 1.88951 1.18966 0.81988 0.94256 0.97436 1.20396 0.95174 0.94652 1.06778 1.20944 0.91871 0.99032 0.97350 1.19875 0.95926 0.92938 1.01872 1.20390 0.89581 1.04069 0.95661 1.20693 0.89817 1.01228 0.96954 0.88893 1.21803 1.00368 0.96125 1.01707 1.23183 0.90413 0.78243 0.83345 1.90544 1.70351 1.51197 1.33488 1.83879 1.21873 1.75298 1.30986 1.21265 0.77720 1.51884 0.94874 0.88757 1.25322 1.00484 0.96357 0.94119 1.70006 1.36116 1.46864 0.97365 0.85642 0.80831 0.78085 0.78868 1.18993 1.20224 1.20214 1.20905 0.94140 0.97064 0.97323 1.21184 0.94317 0.97812 1.09233 0.91594 0.91529 0.90454 0.92044 0.92147 0.85428 0.85139 0.90362 0.90232 0.92550 0.91015 0.91983 0.92219 0.85643 0.85778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.28 37.16 0.38 -0.54 16 2 C 0.05 0.44 5.46 37.16 0.20 0.64 16 3 O -0.32 -3.63 10.14 -19.40 -0.20 -3.83 16 4 C 0.12 1.45 6.69 -39.21 -0.26 1.18 16 5 C -0.15 -1.82 9.99 -39.43 -0.39 -2.21 16 6 C -0.07 -0.92 7.94 -39.61 -0.31 -1.23 16 7 C -0.11 -1.44 4.72 -104.60 -0.49 -1.93 16 8 C -0.06 -0.95 4.19 -27.88 -0.12 -1.06 16 9 C -0.07 -1.25 2.82 -91.77 -0.26 -1.51 16 10 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 11 C -0.14 -2.38 8.68 37.15 0.32 -2.06 16 12 C 0.40 9.97 7.20 36.01 0.26 10.23 16 13 O -0.56 -15.04 15.16 -19.06 -0.29 -15.33 16 14 O -0.21 -6.17 9.65 -20.68 -0.20 -6.37 16 15 C -0.38 -11.41 9.65 30.92 0.30 -11.12 16 16 H 0.09 2.85 6.86 -52.49 -0.36 2.49 16 17 C 0.04 1.16 5.49 -17.53 -0.10 1.07 16 18 N -0.87 -25.64 13.67 55.48 0.76 -24.89 16 19 Si 0.94 21.55 29.55 -169.99 -5.02 16.53 16 20 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 C -0.08 -0.96 9.69 -39.61 -0.38 -1.35 16 24 C -0.21 -2.40 9.04 -39.43 -0.36 -2.76 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 29 H 0.06 0.43 7.66 -51.93 -0.40 0.04 16 30 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.13 1.44 8.02 -52.48 -0.42 1.02 16 32 H 0.08 1.25 8.09 -51.93 -0.42 0.83 16 33 H 0.08 1.31 7.90 -51.93 -0.41 0.90 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.07 1.32 8.12 -51.93 -0.42 0.90 16 36 H 0.06 0.87 6.25 -51.93 -0.32 0.55 16 37 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 39 H 0.12 1.17 6.30 -52.49 -0.33 0.84 16 LS Contribution 333.30 15.07 5.02 5.02 Total: -1.00 -33.79 333.30 -6.72 -40.51 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -5.58 Total: 0.99 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -1.21 Total: -12.64 kcal Atomic # 7 Polarization: -25.64 SS G_CDS: 0.76 Total: -24.89 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.69 Total: -25.53 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.79 -6.72 -40.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840653788.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.997 kcal (2) G-P(sol) polarization free energy of solvation -33.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds