Wall clock time and date at job start Mon Mar 30 2020 23:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42899 * 109.47433 * 2 1 4 4 C 1.35893 * 117.00392 * 179.97438 * 3 2 1 5 5 C 1.38736 * 120.05957 * 180.02562 * 4 3 2 6 6 C 1.38138 * 119.94337 * 180.30421 * 5 4 3 7 7 C 1.38270 * 120.05794 * 359.46080 * 6 5 4 8 8 C 1.50697 * 119.94421 * 180.26220 * 7 6 5 9 9 C 1.53002 * 109.46967 * 270.25509 * 8 7 6 10 10 H 1.08997 * 109.47073 * 304.99861 * 9 8 7 11 11 C 1.52993 * 109.47245 * 65.00386 * 9 8 7 12 12 C 1.50700 * 109.47249 * 184.99982 * 9 8 7 13 13 O 1.21218 * 119.99815 * 0.02562 * 12 9 8 14 14 O 1.34306 * 120.00317 * 179.97438 * 12 9 8 15 15 C 1.34918 * 117.00201 * 179.97438 * 14 12 9 16 16 H 1.07999 * 120.00495 * 0.02562 * 15 14 12 17 17 C 1.38759 * 120.00199 * 180.02562 * 15 14 12 18 18 N 1.31443 * 119.99477 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99972 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47453 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47044 * 120.00221 * 19 17 15 22 22 H 1.48504 * 109.46906 * 239.99604 * 19 17 15 23 23 C 1.38259 * 120.10998 * 0.51383 * 7 6 5 24 24 C 1.38146 * 120.05869 * 359.76954 * 23 7 6 25 25 H 1.08994 * 109.46893 * 300.00316 * 1 2 3 26 26 H 1.09001 * 109.46536 * 59.99754 * 1 2 3 27 27 H 1.08995 * 109.46775 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47184 * 240.00253 * 2 1 3 29 29 H 1.09001 * 109.46987 * 119.99960 * 2 1 3 30 30 H 1.08002 * 120.02291 * 0.02562 * 5 4 3 31 31 H 1.08004 * 119.96766 * 179.69880 * 6 5 4 32 32 H 1.08999 * 109.47575 * 30.25213 * 8 7 6 33 33 H 1.09002 * 109.47295 * 150.25537 * 8 7 6 34 34 H 1.08997 * 109.47513 * 59.99745 * 11 9 8 35 35 H 1.09003 * 109.47505 * 180.02562 * 11 9 8 36 36 H 1.09004 * 109.47003 * 299.99961 * 11 9 8 37 37 H 0.97000 * 119.99382 * 179.97438 * 18 17 15 38 38 H 1.08006 * 119.97187 * 179.74376 * 23 7 6 39 39 H 1.07993 * 120.03340 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3536 1.5253 0.0005 5 6 3.8852 2.8068 0.0011 6 6 5.2551 2.9850 -0.0047 7 6 6.0963 1.8877 0.0002 8 6 7.5902 2.0851 -0.0002 9 6 8.0954 2.1522 -1.4428 10 1 7.7747 1.2608 -1.9819 11 6 7.5228 3.3954 -2.1264 12 6 9.6006 2.2263 -1.4451 13 8 10.2090 2.2250 -0.3967 14 8 10.2680 2.2926 -2.6087 15 6 11.6139 2.3573 -2.5402 16 1 12.1064 2.3538 -1.5791 17 6 12.3653 2.4284 -3.7045 18 7 11.7658 2.4322 -4.8743 19 14 14.2287 2.5172 -3.6095 20 1 14.6534 2.4970 -2.1867 21 1 14.8166 1.3525 -4.3187 22 1 14.6975 3.7735 -4.2477 23 6 5.5690 0.6096 0.0002 24 6 4.1998 0.4259 0.0001 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.2285 3.6642 0.0015 31 1 5.6693 3.9825 -0.0092 32 1 7.8341 3.0149 0.5137 33 1 8.0672 1.2503 0.5134 34 1 7.8435 4.2868 -1.5874 35 1 7.8823 3.4430 -3.1544 36 1 6.4340 3.3419 -2.1248 37 1 12.2911 2.4823 -5.6882 38 1 6.2282 -0.2460 -0.0002 39 1 3.7885 -0.5727 -0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840653788.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:23 Heat of formation + Delta-G solvation = -131.618204 kcal Electronic energy + Delta-G solvation = -20792.423655 eV Core-core repulsion = 17471.379258 eV Total energy + Delta-G solvation = -3321.044397 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.35940 -40.93025 -38.99318 -37.38581 -35.57323 -34.28179 -32.82187 -31.82778 -30.90985 -27.66634 -27.38546 -24.91256 -24.79767 -22.94439 -22.07321 -20.85520 -19.86077 -19.18902 -18.49983 -17.11517 -17.01308 -16.83972 -16.52837 -16.27025 -15.99342 -15.32661 -15.06559 -14.83867 -14.39511 -14.24248 -14.17575 -13.80895 -13.65898 -13.31898 -13.09289 -13.01494 -12.83977 -12.57931 -12.36856 -12.27740 -12.24621 -12.11398 -12.02883 -11.89592 -11.60723 -11.50131 -10.90673 -10.69358 -9.91383 -9.02311 -8.53622 -6.33341 0.41224 0.44053 1.29870 1.33940 1.52416 1.65392 2.11862 2.29313 2.67127 2.89718 2.97423 3.81528 3.92941 3.94204 4.01701 4.03553 4.07749 4.20116 4.28821 4.38438 4.44851 4.48476 4.59778 4.72660 4.84184 4.87454 4.90094 4.96061 4.97312 5.11598 5.18047 5.21046 5.22243 5.31502 5.35401 5.43023 5.74514 5.83450 5.85157 6.49295 6.67833 6.91764 7.79211 8.67268 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.043801 B = 0.002907 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.106881 B = 9630.327428 C = 9735.371312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.044 3.956 3 O -0.332 6.332 4 C 0.115 3.885 5 C -0.158 4.158 6 C -0.074 4.074 7 C -0.120 4.120 8 C -0.047 4.047 9 C -0.060 4.060 10 H 0.104 0.896 11 C -0.134 4.134 12 C 0.399 3.601 13 O -0.583 6.583 14 O -0.242 6.242 15 C -0.421 4.421 16 H 0.080 0.920 17 C -0.005 4.005 18 N -0.903 5.903 19 Si 1.017 2.983 20 H -0.265 1.265 21 H -0.260 1.260 22 H -0.260 1.260 23 C -0.082 4.082 24 C -0.207 4.207 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.098 0.902 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.142 0.858 31 H 0.142 0.858 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.049 0.951 36 H 0.094 0.906 37 H 0.278 0.722 38 H 0.132 0.868 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.481 -3.651 7.851 22.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 O -0.246 6.246 4 C 0.069 3.931 5 C -0.177 4.177 6 C -0.092 4.092 7 C -0.120 4.120 8 C -0.085 4.085 9 C -0.079 4.079 10 H 0.122 0.878 11 C -0.191 4.191 12 C 0.247 3.753 13 O -0.481 6.481 14 O -0.150 6.150 15 C -0.497 4.497 16 H 0.098 0.902 17 C -0.205 4.205 18 N -0.540 5.540 19 Si 0.835 3.165 20 H -0.189 1.189 21 H -0.184 1.184 22 H -0.184 1.184 23 C -0.100 4.100 24 C -0.226 4.226 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.117 0.883 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.160 0.840 31 H 0.160 0.840 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.113 0.887 37 H 0.088 0.912 38 H 0.150 0.850 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -20.450 -3.509 7.875 22.193 hybrid contribution 1.141 -0.235 -0.049 1.166 sum -19.308 -3.743 7.826 21.168 Atomic orbital electron populations 1.21801 0.91468 1.04121 1.03196 1.23052 0.96913 0.80916 1.02178 1.86043 1.18767 1.31146 1.88689 1.19172 0.82615 0.94524 0.96753 1.20605 0.95185 0.95352 1.06519 1.21063 0.92029 0.99235 0.96899 1.19664 0.94239 0.93952 1.04157 1.20227 0.91395 1.03466 0.93373 1.20860 0.85016 1.02624 0.99429 0.87832 1.21752 1.02165 0.95171 1.00036 1.24507 0.92808 0.75939 0.82075 1.90508 1.71650 1.51860 1.34116 1.83907 1.21745 1.76461 1.32934 1.21447 0.78628 1.54526 0.95064 0.90250 1.26529 1.06008 0.94788 0.93175 1.70087 1.38637 1.47028 0.98286 0.84584 0.73548 0.79253 0.79067 1.18941 1.18409 1.18397 1.21055 0.94883 0.96964 0.97146 1.21386 0.93767 0.98869 1.08541 0.91760 0.91895 0.88297 0.91376 0.91192 0.84015 0.83980 0.90764 0.91295 0.92313 0.93137 0.88745 0.91238 0.84967 0.83656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 10.28 71.98 0.74 -0.73 16 2 C 0.04 0.61 5.46 71.98 0.39 1.00 16 3 O -0.33 -6.88 10.14 -92.34 -0.94 -7.82 16 4 C 0.11 2.56 6.69 22.51 0.15 2.71 16 5 C -0.16 -3.49 9.99 22.37 0.22 -3.26 16 6 C -0.07 -1.71 7.94 22.25 0.18 -1.54 16 7 C -0.12 -3.10 4.72 -19.85 -0.09 -3.20 16 8 C -0.05 -1.48 4.19 29.85 0.12 -1.36 16 9 C -0.06 -2.23 2.82 -11.54 -0.03 -2.26 16 10 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 11 C -0.13 -4.41 8.68 71.98 0.62 -3.78 16 12 C 0.40 20.39 7.20 71.24 0.51 20.90 16 13 O -0.58 -32.42 15.16 20.75 0.31 -32.11 16 14 O -0.24 -14.52 9.65 14.94 0.14 -14.38 16 15 C -0.42 -26.01 9.65 67.94 0.66 -25.36 16 16 H 0.08 5.00 6.86 -2.91 -0.02 4.98 16 17 C 0.00 -0.29 5.49 84.88 0.47 0.18 16 18 N -0.90 -54.01 13.67 21.63 0.30 -53.72 16 19 Si 1.02 44.07 29.55 68.60 2.03 46.10 16 20 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 21 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 22 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 23 C -0.08 -1.96 9.69 22.25 0.22 -1.74 16 24 C -0.21 -4.38 9.04 22.37 0.20 -4.18 16 25 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.07 0.85 7.66 -2.39 -0.02 0.83 16 29 H 0.07 0.83 7.66 -2.39 -0.02 0.81 16 30 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 31 H 0.14 2.87 8.02 -2.91 -0.02 2.84 16 32 H 0.07 2.36 8.09 -2.39 -0.02 2.35 16 33 H 0.07 2.29 7.90 -2.39 -0.02 2.27 16 34 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.05 1.87 8.12 -2.39 -0.02 1.85 16 36 H 0.09 2.49 6.25 -2.38 -0.01 2.47 16 37 H 0.28 15.03 8.31 -92.71 -0.77 14.26 16 38 H 0.13 2.88 8.06 -2.91 -0.02 2.85 16 39 H 0.15 2.35 6.30 -2.91 -0.02 2.34 16 Total: -1.00 -74.22 333.30 7.24 -66.97 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 1.04 Total: 17.56 kcal Atomic # 6 Polarization: -26.98 SS G_CDS: 4.36 Total: -22.62 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: 0.30 Total: -53.72 kcal Atomic # 8 Polarization: -53.83 SS G_CDS: -0.48 Total: -54.30 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -74.22 7.24 -66.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840653788.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.643 kcal (2) G-P(sol) polarization free energy of solvation -74.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds