Wall clock time and date at job start Mon Mar 30 2020 23:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47491 * 2 1 4 4 C 1.53002 * 109.46763 * 240.00227 * 2 1 3 5 5 C 1.50701 * 109.47086 * 66.10526 * 4 2 1 6 6 O 1.20822 * 120.00043 * 7.21483 * 5 4 2 7 7 O 1.34233 * 119.99683 * 187.20833 * 5 4 2 8 8 C 1.45207 * 116.99553 * 181.45947 * 7 5 4 9 9 C 1.50701 * 112.90756 * 305.20631 * 8 7 5 10 10 H 1.08005 * 119.99531 * 107.26500 * 9 8 7 11 11 C 1.37875 * 120.00292 * 287.26199 * 9 8 7 12 12 N 1.31520 * 119.99769 * 6.55048 * 11 9 8 13 13 Si 1.86800 * 120.00126 * 186.54215 * 11 9 8 14 14 H 1.48494 * 109.47088 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.46876 * 120.00522 * 13 11 9 16 16 H 1.48497 * 109.46958 * 240.00376 * 13 11 9 17 17 C 1.53783 * 113.61033 * 173.95797 * 8 7 5 18 18 C 1.53791 * 87.17089 * 220.06192 * 17 8 7 19 19 C 1.53783 * 87.07915 * 25.38920 * 18 17 8 20 20 C 1.50697 * 109.47571 * 120.00392 * 2 1 3 21 21 C 1.34514 * 125.79203 * 239.71295 * 20 2 1 22 22 C 1.41383 * 106.84530 * 179.88725 * 21 20 2 23 23 C 1.34519 * 106.83607 * 0.37362 * 22 21 20 24 24 O 1.34301 * 108.42059 * 359.77156 * 23 22 21 25 25 H 1.09000 * 109.46588 * 304.63214 * 1 2 3 26 26 H 1.08994 * 109.47532 * 64.63087 * 1 2 3 27 27 H 1.09003 * 109.46924 * 184.63748 * 1 2 3 28 28 H 1.08996 * 109.47274 * 306.10083 * 4 2 1 29 29 H 1.09006 * 109.47528 * 186.10463 * 4 2 1 30 30 H 0.96996 * 120.00090 * 174.99832 * 12 11 9 31 31 H 1.08994 * 113.61447 * 105.47189 * 17 8 7 32 32 H 1.08997 * 113.61357 * 334.64801 * 17 8 7 33 33 H 1.08992 * 113.61073 * 139.94062 * 18 17 8 34 34 H 1.08997 * 113.61138 * 270.76185 * 18 17 8 35 35 H 1.08997 * 113.61117 * 89.11952 * 19 18 17 36 36 H 1.09000 * 113.61398 * 219.93251 * 19 18 17 37 37 H 1.08000 * 126.57645 * 0.02562 * 21 20 2 38 38 H 1.07997 * 126.57808 * 180.12023 * 22 21 20 39 39 H 1.07995 * 125.78735 * 179.74794 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6647 0.0711 -2.4751 6 8 1.1692 1.1668 -2.3579 7 8 1.8811 -0.4405 -3.6971 8 6 1.5251 0.3918 -4.8325 9 6 0.0931 0.8594 -4.7910 10 1 -0.1318 1.8904 -4.5607 11 6 -0.9299 -0.0288 -5.0471 12 7 -0.6669 -1.3083 -5.2002 13 14 -2.6894 0.5852 -5.1765 14 1 -2.7174 2.0550 -4.9670 15 1 -3.2267 0.2672 -6.5238 16 1 -3.5225 -0.0787 -4.1419 17 6 1.9391 -0.2056 -6.1878 18 6 2.3385 1.2190 -6.6076 19 6 2.5345 1.5201 -5.1123 20 6 2.0324 -0.7105 1.2304 21 6 2.8135 -0.1737 2.1849 22 6 3.0389 -1.1852 3.1466 23 6 2.3889 -2.2821 2.7180 24 8 1.7811 -1.9887 1.5569 25 1 -0.3632 0.5840 0.8456 26 1 -0.3634 0.4403 -0.9285 27 1 -0.3633 -1.0243 0.0831 28 1 1.5901 -1.7125 -1.3056 29 1 3.1244 -0.8169 -1.1965 30 1 -1.3924 -1.9430 -5.3080 31 1 1.1044 -0.6113 -6.7593 32 1 2.7817 -0.8939 -6.1225 33 1 3.2613 1.2611 -7.1861 34 1 1.5259 1.7833 -7.0650 35 1 3.5401 1.3038 -4.7516 36 1 2.1819 2.5079 -4.8159 37 1 3.1935 0.8369 2.2126 38 1 3.6243 -1.0956 4.0497 39 1 2.3609 -3.2369 3.2219 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860745876.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:43:12 Heat of formation + Delta-G solvation = -57.933574 kcal Electronic energy + Delta-G solvation = -22123.705505 eV Core-core repulsion = 18805.856313 eV Total energy + Delta-G solvation = -3317.849192 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.51224 -39.34116 -37.37581 -34.95893 -33.96566 -32.85189 -32.27326 -28.90142 -27.71615 -26.06588 -24.50388 -23.49432 -22.49174 -21.68064 -20.24764 -19.23921 -18.54762 -17.35522 -16.72848 -15.93450 -15.56896 -15.31251 -15.01594 -14.65684 -14.16240 -13.88065 -13.75328 -12.99272 -12.82502 -12.75140 -12.54988 -12.54104 -11.85471 -11.54380 -11.32518 -11.09244 -11.02039 -10.91314 -10.84158 -10.68115 -10.33489 -10.22606 -9.90171 -9.87038 -9.75883 -9.24820 -8.71388 -8.54939 -8.48623 -8.37006 -6.11172 -4.21321 1.80709 2.66335 3.07899 3.24523 3.33726 3.39898 3.53138 4.02939 4.35842 4.79516 5.00584 5.06622 5.16601 5.22734 5.30114 5.59173 5.74790 5.80786 5.83877 5.87751 5.96868 5.99526 6.05287 6.12252 6.17844 6.29070 6.38806 6.47091 6.54393 6.55909 6.66991 6.70877 6.91261 7.13836 7.23418 7.40953 7.59679 7.82189 7.96182 8.41799 8.85197 9.26287 9.47313 10.93132 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021321 B = 0.005067 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.952247 B = 5524.555265 C = 6218.086856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.004 3.996 3 H 0.109 0.891 4 C -0.117 4.117 5 C 0.465 3.535 6 O -0.505 6.505 7 O -0.355 6.355 8 C 0.236 3.764 9 C -0.503 4.503 10 H 0.069 0.931 11 C 0.073 3.927 12 N -0.866 5.866 13 Si 0.892 3.108 14 H -0.270 1.270 15 H -0.282 1.282 16 H -0.283 1.283 17 C -0.106 4.106 18 C -0.131 4.131 19 C -0.159 4.159 20 C 0.010 3.990 21 C -0.219 4.219 22 C -0.214 4.214 23 C -0.051 4.051 24 O -0.171 6.171 25 H 0.054 0.946 26 H 0.087 0.913 27 H 0.054 0.946 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.262 0.738 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.079 0.921 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.392 -1.051 10.628 12.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 H 0.127 0.873 4 C -0.155 4.155 5 C 0.307 3.693 6 O -0.394 6.394 7 O -0.271 6.271 8 C 0.203 3.797 9 C -0.541 4.541 10 H 0.088 0.912 11 C -0.132 4.132 12 N -0.503 5.503 13 Si 0.719 3.281 14 H -0.194 1.194 15 H -0.208 1.208 16 H -0.209 1.209 17 C -0.144 4.144 18 C -0.169 4.169 19 C -0.197 4.197 20 C -0.040 4.040 21 C -0.238 4.238 22 C -0.234 4.234 23 C -0.118 4.118 24 O -0.067 6.067 25 H 0.073 0.927 26 H 0.106 0.894 27 H 0.073 0.927 28 H 0.116 0.884 29 H 0.112 0.888 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.164 0.836 38 H 0.162 0.838 39 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 5.992 -1.080 10.317 11.979 hybrid contribution -0.807 0.227 0.332 0.902 sum 5.185 -0.853 10.648 11.874 Atomic orbital electron populations 1.21932 0.92931 1.02152 1.03866 1.19603 0.97366 0.98010 0.86459 0.87274 1.21439 1.02844 1.00676 0.90554 1.22636 0.76030 0.85287 0.85376 1.90543 1.39743 1.21534 1.87570 1.86474 1.75548 1.50417 1.14679 1.21277 0.92855 0.85576 0.80010 1.20992 0.88623 0.96793 1.47646 0.91244 1.25072 0.99325 0.94868 0.93903 1.70031 1.32153 1.01156 1.46995 0.86522 0.84380 0.79477 0.77681 1.19421 1.20786 1.20894 1.22863 0.99981 0.94656 0.96914 1.22521 0.99792 0.98957 0.95625 1.23554 0.98870 1.00764 0.96520 1.22607 1.00310 0.82354 0.98749 1.21593 1.04613 1.01381 0.96186 1.21786 1.05637 0.93732 1.02202 1.23985 0.99722 1.00819 0.87319 1.84038 1.59267 1.28220 1.35168 0.92691 0.89426 0.92664 0.88352 0.88831 0.92776 0.89975 0.92482 0.93116 0.90276 0.92276 0.92064 0.83575 0.83751 0.78414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 8.98 37.16 0.33 -2.19 16 2 C 0.00 0.06 2.43 -91.77 -0.22 -0.16 16 3 H 0.11 1.69 7.77 -51.93 -0.40 1.29 16 4 C -0.12 -2.03 5.26 -27.88 -0.15 -2.18 16 5 C 0.46 10.40 7.13 36.01 0.26 10.66 16 6 O -0.50 -12.23 12.72 -18.75 -0.24 -12.46 16 7 O -0.35 -8.84 10.18 -39.27 -0.40 -9.24 16 8 C 0.24 5.92 0.55 -90.87 -0.05 5.87 16 9 C -0.50 -13.73 6.47 -34.44 -0.22 -13.96 16 10 H 0.07 1.97 7.82 -52.48 -0.41 1.56 16 11 C 0.07 2.00 5.14 -17.82 -0.09 1.90 16 12 N -0.87 -24.16 12.14 55.43 0.67 -23.48 16 13 Si 0.89 21.23 29.55 -169.99 -5.02 16.21 16 14 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 C -0.11 -2.46 7.08 -25.91 -0.18 -2.65 16 18 C -0.13 -2.66 7.81 -25.91 -0.20 -2.86 16 19 C -0.16 -3.49 7.21 -25.83 -0.19 -3.67 16 20 C 0.01 0.15 5.83 -35.63 -0.21 -0.06 16 21 C -0.22 -2.83 10.78 -39.70 -0.43 -3.25 16 22 C -0.21 -2.43 10.91 -39.70 -0.43 -2.86 16 23 C -0.05 -0.57 12.09 29.42 0.36 -0.22 16 24 O -0.17 -2.46 10.65 5.72 0.06 -2.40 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.09 1.73 6.25 -51.93 -0.32 1.41 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 29 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 30 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 31 H 0.08 2.06 7.00 -51.93 -0.36 1.70 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.06 1.36 8.10 -51.93 -0.42 0.94 16 37 H 0.15 1.65 8.06 -52.49 -0.42 1.22 16 38 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 39 H 0.20 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 328.78 15.07 4.95 4.95 Total: -1.00 -30.46 328.78 -7.11 -37.57 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -5.71 Total: 4.49 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -1.43 Total: -15.63 kcal Atomic # 7 Polarization: -24.16 SS G_CDS: 0.67 Total: -23.48 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.58 Total: -24.11 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.46 -7.11 -37.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860745876.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.360 kcal (2) G-P(sol) polarization free energy of solvation -30.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds