Wall clock time and date at job start Mon Mar 30 2020 23:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47491 * 2 1 4 4 C 1.53002 * 109.46763 * 240.00227 * 2 1 3 5 5 C 1.50701 * 109.47086 * 66.10526 * 4 2 1 6 6 O 1.20822 * 120.00043 * 7.21483 * 5 4 2 7 7 O 1.34233 * 119.99683 * 187.20833 * 5 4 2 8 8 C 1.45207 * 116.99553 * 181.45947 * 7 5 4 9 9 C 1.50701 * 112.90756 * 305.20631 * 8 7 5 10 10 H 1.08005 * 119.99531 * 107.26500 * 9 8 7 11 11 C 1.37875 * 120.00292 * 287.26199 * 9 8 7 12 12 N 1.31520 * 119.99769 * 6.55048 * 11 9 8 13 13 Si 1.86800 * 120.00126 * 186.54215 * 11 9 8 14 14 H 1.48494 * 109.47088 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.46876 * 120.00522 * 13 11 9 16 16 H 1.48497 * 109.46958 * 240.00376 * 13 11 9 17 17 C 1.53783 * 113.61033 * 173.95797 * 8 7 5 18 18 C 1.53791 * 87.17089 * 220.06192 * 17 8 7 19 19 C 1.53783 * 87.07915 * 25.38920 * 18 17 8 20 20 C 1.50697 * 109.47571 * 120.00392 * 2 1 3 21 21 C 1.34514 * 125.79203 * 239.71295 * 20 2 1 22 22 C 1.41383 * 106.84530 * 179.88725 * 21 20 2 23 23 C 1.34519 * 106.83607 * 0.37362 * 22 21 20 24 24 O 1.34301 * 108.42059 * 359.77156 * 23 22 21 25 25 H 1.09000 * 109.46588 * 304.63214 * 1 2 3 26 26 H 1.08994 * 109.47532 * 64.63087 * 1 2 3 27 27 H 1.09003 * 109.46924 * 184.63748 * 1 2 3 28 28 H 1.08996 * 109.47274 * 306.10083 * 4 2 1 29 29 H 1.09006 * 109.47528 * 186.10463 * 4 2 1 30 30 H 0.96996 * 120.00090 * 174.99832 * 12 11 9 31 31 H 1.08994 * 113.61447 * 105.47189 * 17 8 7 32 32 H 1.08997 * 113.61357 * 334.64801 * 17 8 7 33 33 H 1.08992 * 113.61073 * 139.94062 * 18 17 8 34 34 H 1.08997 * 113.61138 * 270.76185 * 18 17 8 35 35 H 1.08997 * 113.61117 * 89.11952 * 19 18 17 36 36 H 1.09000 * 113.61398 * 219.93251 * 19 18 17 37 37 H 1.08000 * 126.57645 * 0.02562 * 21 20 2 38 38 H 1.07997 * 126.57808 * 180.12023 * 22 21 20 39 39 H 1.07995 * 125.78735 * 179.74794 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6647 0.0711 -2.4751 6 8 1.1692 1.1668 -2.3579 7 8 1.8811 -0.4405 -3.6971 8 6 1.5251 0.3918 -4.8325 9 6 0.0931 0.8594 -4.7910 10 1 -0.1318 1.8904 -4.5607 11 6 -0.9299 -0.0288 -5.0471 12 7 -0.6669 -1.3083 -5.2002 13 14 -2.6894 0.5852 -5.1765 14 1 -2.7174 2.0550 -4.9670 15 1 -3.2267 0.2672 -6.5238 16 1 -3.5225 -0.0787 -4.1419 17 6 1.9391 -0.2056 -6.1878 18 6 2.3385 1.2190 -6.6076 19 6 2.5345 1.5201 -5.1123 20 6 2.0324 -0.7105 1.2304 21 6 2.8135 -0.1737 2.1849 22 6 3.0389 -1.1852 3.1466 23 6 2.3889 -2.2821 2.7180 24 8 1.7811 -1.9887 1.5569 25 1 -0.3632 0.5840 0.8456 26 1 -0.3634 0.4403 -0.9285 27 1 -0.3633 -1.0243 0.0831 28 1 1.5901 -1.7125 -1.3056 29 1 3.1244 -0.8169 -1.1965 30 1 -1.3924 -1.9430 -5.3080 31 1 1.1044 -0.6113 -6.7593 32 1 2.7817 -0.8939 -6.1225 33 1 3.2613 1.2611 -7.1861 34 1 1.5259 1.7833 -7.0650 35 1 3.5401 1.3038 -4.7516 36 1 2.1819 2.5079 -4.8159 37 1 3.1935 0.8369 2.2126 38 1 3.6243 -1.0956 4.0497 39 1 2.3609 -3.2369 3.2219 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860745876.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:43:11 Heat of formation + Delta-G solvation = -73.568631 kcal Electronic energy + Delta-G solvation = -22124.383492 eV Core-core repulsion = 18805.856313 eV Total energy + Delta-G solvation = -3318.527179 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.48331 -41.14110 -39.11766 -36.46144 -35.70327 -34.34399 -33.80510 -30.06012 -29.07842 -28.05299 -26.30540 -25.13903 -23.89715 -22.64431 -21.59324 -20.59162 -20.44469 -18.89905 -18.07321 -17.26254 -17.09549 -16.93252 -16.83364 -16.47270 -15.67211 -15.35509 -15.29773 -14.53610 -14.24049 -14.11563 -13.67421 -13.54168 -13.44573 -13.40801 -12.97668 -12.91954 -12.73918 -12.52543 -12.30630 -12.14726 -12.06462 -11.98201 -11.77664 -11.58466 -11.06745 -10.80040 -10.73789 -10.44729 -10.38186 -9.35557 -8.18662 -6.34275 0.83367 1.33022 1.36828 1.48202 1.74127 1.77834 2.11425 2.35587 2.43000 3.14089 3.71919 3.72536 3.95484 4.02496 4.06188 4.17608 4.22813 4.30355 4.37069 4.45137 4.60820 4.64721 4.68195 4.85971 4.89483 4.92968 4.96290 5.05243 5.12165 5.16906 5.17986 5.33845 5.39462 5.52496 5.66528 5.67239 5.82797 6.05122 6.27867 6.53160 6.71660 7.33867 7.46586 8.85089 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021321 B = 0.005067 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.952247 B = 5524.555265 C = 6218.086856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.014 3.986 3 H 0.109 0.891 4 C -0.105 4.105 5 C 0.455 3.545 6 O -0.529 6.529 7 O -0.371 6.371 8 C 0.210 3.790 9 C -0.514 4.514 10 H 0.047 0.953 11 C 0.034 3.966 12 N -0.890 5.890 13 Si 0.945 3.055 14 H -0.273 1.273 15 H -0.270 1.270 16 H -0.282 1.282 17 C -0.107 4.107 18 C -0.113 4.113 19 C -0.152 4.152 20 C -0.018 4.018 21 C -0.214 4.214 22 C -0.222 4.222 23 C -0.046 4.046 24 O -0.193 6.193 25 H 0.071 0.929 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.096 0.904 29 H 0.118 0.882 30 H 0.264 0.736 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.049 0.951 37 H 0.159 0.841 38 H 0.172 0.828 39 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.564 -1.346 11.929 14.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.005 4.005 3 H 0.127 0.873 4 C -0.143 4.143 5 C 0.299 3.701 6 O -0.419 6.419 7 O -0.288 6.288 8 C 0.177 3.823 9 C -0.552 4.552 10 H 0.065 0.935 11 C -0.169 4.169 12 N -0.528 5.528 13 Si 0.770 3.230 14 H -0.197 1.197 15 H -0.196 1.196 16 H -0.208 1.208 17 C -0.145 4.145 18 C -0.150 4.150 19 C -0.189 4.189 20 C -0.068 4.068 21 C -0.233 4.233 22 C -0.241 4.241 23 C -0.112 4.112 24 O -0.089 6.089 25 H 0.090 0.910 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.114 0.886 29 H 0.136 0.864 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.068 0.932 37 H 0.177 0.823 38 H 0.190 0.810 39 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 7.169 -1.371 11.617 13.719 hybrid contribution -1.133 0.298 0.034 1.172 sum 6.036 -1.073 11.650 13.165 Atomic orbital electron populations 1.21841 0.94107 1.01920 1.02498 1.19399 0.96342 0.98145 0.86593 0.87270 1.21464 1.04362 0.99685 0.88792 1.23543 0.75221 0.85475 0.85849 1.90521 1.40726 1.22835 1.87816 1.86446 1.75800 1.50840 1.15707 1.21509 0.92695 0.87295 0.80838 1.21032 0.90475 0.95813 1.47839 0.93460 1.25664 1.02477 0.95029 0.93705 1.70108 1.33026 1.01812 1.47870 0.85711 0.80560 0.78660 0.78045 1.19730 1.19553 1.20795 1.22839 0.99434 0.96434 0.95770 1.22440 1.01281 0.96290 0.94968 1.23486 0.98770 0.98972 0.97709 1.22254 1.02495 0.83007 0.99033 1.21915 1.03245 1.02293 0.95828 1.22151 1.06001 0.93087 1.02872 1.24837 0.98074 1.02334 0.85993 1.84019 1.60121 1.28170 1.36620 0.91005 0.93147 0.92812 0.88580 0.86356 0.92695 0.92586 0.91329 0.89200 0.90828 0.90535 0.93192 0.82325 0.81028 0.74743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.96 8.98 71.98 0.65 -4.32 16 2 C 0.01 0.42 2.43 -11.54 -0.03 0.39 16 3 H 0.11 3.37 7.77 -2.38 -0.02 3.35 16 4 C -0.11 -3.65 5.26 29.85 0.16 -3.49 16 5 C 0.46 20.76 7.13 71.24 0.51 21.27 16 6 O -0.53 -26.38 12.72 21.97 0.28 -26.10 16 7 O -0.37 -18.77 10.18 -51.45 -0.52 -19.29 16 8 C 0.21 10.67 0.55 -10.95 -0.01 10.66 16 9 C -0.51 -28.80 6.47 25.60 0.17 -28.64 16 10 H 0.05 2.79 7.82 -2.91 -0.02 2.77 16 11 C 0.03 1.88 5.14 84.65 0.44 2.31 16 12 N -0.89 -50.65 12.14 21.45 0.26 -50.39 16 13 Si 0.94 44.38 29.55 68.60 2.03 46.41 16 14 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 15 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 16 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 17 C -0.11 -4.94 7.08 31.12 0.22 -4.72 16 18 C -0.11 -4.39 7.81 31.12 0.24 -4.15 16 19 C -0.15 -6.55 7.21 31.18 0.22 -6.33 16 20 C -0.02 -0.50 5.83 24.83 0.14 -0.35 16 21 C -0.21 -5.03 10.78 22.19 0.24 -4.80 16 22 C -0.22 -4.31 10.91 22.19 0.24 -4.07 16 23 C -0.05 -0.89 12.09 66.97 0.81 -0.08 16 24 O -0.19 -5.21 10.65 -2.46 -0.03 -5.24 16 25 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.05 2.07 6.25 -2.39 -0.01 2.06 16 27 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 29 H 0.12 3.48 8.14 -2.38 -0.02 3.46 16 30 H 0.26 14.26 8.32 -92.71 -0.77 13.49 16 31 H 0.06 2.85 7.00 -2.39 -0.02 2.83 16 32 H 0.07 2.94 8.14 -2.39 -0.02 2.93 16 33 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 34 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 35 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 36 H 0.05 2.23 8.10 -2.39 -0.02 2.21 16 37 H 0.16 3.21 8.06 -2.91 -0.02 3.18 16 38 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 39 H 0.24 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -66.97 328.78 7.05 -59.92 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 1.03 Total: 20.98 kcal Atomic # 6 Polarization: -30.30 SS G_CDS: 4.00 Total: -26.30 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: 0.26 Total: -50.39 kcal Atomic # 8 Polarization: -50.36 SS G_CDS: -0.27 Total: -50.63 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -66.97 7.05 -59.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860745876.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.648 kcal (2) G-P(sol) polarization free energy of solvation -66.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds