Wall clock time and date at job start Tue Mar 31 2020 00:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99923 * 2 1 4 4 H 1.48510 * 109.46820 * 270.00155 * 3 2 1 5 5 H 1.48504 * 109.47304 * 29.99651 * 3 2 1 6 6 H 1.48500 * 109.47365 * 150.00071 * 3 2 1 7 7 C 1.37877 * 120.00354 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00356 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99752 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47216 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47435 * 179.97438 * 10 9 7 12 12 C 1.34769 * 120.00140 * 180.02562 * 11 10 9 13 13 O 1.21612 * 120.00071 * 359.97438 * 12 11 10 14 14 C 1.47397 * 120.00186 * 180.02562 * 12 11 10 15 15 C 1.37355 * 128.56383 * 0.02562 * 14 12 11 16 16 O 1.33491 * 106.34296 * 179.97438 * 15 14 12 17 17 N 1.20658 * 113.15590 * 359.70506 * 16 15 14 18 18 C 1.30008 * 112.29988 * 0.49800 * 17 16 15 19 19 C 1.50701 * 127.33477 * 179.79140 * 18 17 16 20 20 C 1.53876 * 110.03013 * 59.69060 * 19 18 17 21 21 C 1.54267 * 106.59870 * 240.71414 * 20 19 18 22 22 C 1.54891 * 104.19324 * 336.39035 * 21 20 19 23 23 C 1.54261 * 110.03593 * 302.52145 * 19 18 17 24 24 H 0.97003 * 120.00626 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47352 * 59.99931 * 9 7 2 26 26 H 1.08996 * 109.47263 * 299.99773 * 9 7 2 27 27 H 1.09003 * 109.46916 * 59.99398 * 10 9 7 28 28 H 1.08996 * 109.47016 * 300.00166 * 10 9 7 29 29 H 0.96998 * 119.99323 * 0.02562 * 11 10 9 30 30 H 1.07999 * 126.83166 * 359.97438 * 15 14 12 31 31 H 1.08998 * 110.05533 * 181.09962 * 19 18 17 32 32 H 1.08995 * 110.03160 * 359.97438 * 20 19 18 33 33 H 1.08998 * 110.03319 * 121.42692 * 20 19 18 34 34 H 1.09004 * 110.48597 * 95.06674 * 21 20 19 35 35 H 1.08994 * 110.48679 * 217.71200 * 21 20 19 36 36 H 1.09005 * 110.75269 * 279.62515 * 22 21 20 37 37 H 1.09004 * 110.91555 * 156.33330 * 22 21 20 38 38 H 1.09000 * 110.48928 * 261.57113 * 23 19 18 39 39 H 1.08999 * 110.48469 * 24.21522 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4002 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 2.1868 -6.0979 0.0018 13 8 3.4029 -6.0979 0.0014 14 6 1.4499 -7.3745 0.0018 15 6 0.0917 -7.5791 0.0008 16 8 -0.0889 -8.9017 0.0008 17 7 0.9460 -9.5219 -0.0041 18 6 1.9875 -8.7438 0.0023 19 6 3.4369 -9.1566 0.0035 20 6 3.7468 -9.9962 -1.2482 21 6 4.2163 -11.3776 -0.7471 22 6 4.7359 -11.1051 0.6864 23 6 3.7289 -10.0570 1.2216 24 1 -0.4851 0.8400 0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8721 -3.6042 0.8905 28 1 2.8720 -3.6043 -0.8894 29 1 0.5429 -4.9308 0.0011 30 1 -0.6773 -6.8208 0.0002 31 1 4.0767 -8.2745 0.0292 32 1 2.8488 -10.1054 -1.8562 33 1 4.5370 -9.5216 -1.8299 34 1 3.3820 -12.0787 -0.7236 35 1 5.0191 -11.7595 -1.3777 36 1 5.7448 -10.6931 0.6597 37 1 4.7066 -12.0123 1.2899 38 1 4.1761 -9.4752 2.0276 39 1 2.8159 -10.5448 1.5630 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867344888.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:30 Heat of formation + Delta-G solvation = -5.649362 kcal Electronic energy + Delta-G solvation = -21011.325992 eV Core-core repulsion = 17728.036764 eV Total energy + Delta-G solvation = -3283.289227 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.96919 -39.24118 -38.33128 -34.99769 -33.76439 -33.00665 -32.03787 -29.68204 -28.86614 -28.79006 -25.54727 -23.87045 -22.61257 -21.15306 -20.85580 -20.45911 -19.64277 -18.13907 -17.70426 -16.69478 -16.38051 -15.86547 -15.44318 -15.07030 -14.92948 -14.52859 -14.00089 -13.66865 -13.51596 -13.18123 -13.14976 -12.35425 -12.02337 -11.86290 -11.34060 -11.28172 -11.26619 -11.19667 -11.09015 -10.82265 -10.73019 -10.67436 -10.42775 -9.96255 -9.89524 -9.78717 -9.60493 -9.30909 -8.65667 -8.43862 -6.14667 -4.17748 1.04759 1.74171 2.89747 3.26402 3.32749 3.36164 3.39742 3.50350 3.93072 4.16123 4.37853 4.48339 4.53720 4.75548 4.86302 5.11362 5.22772 5.23436 5.27594 5.35904 5.42280 5.50311 5.55177 5.66450 5.73047 5.83381 5.97470 6.03952 6.15750 6.23755 6.25417 6.29145 6.63656 6.74868 7.43567 7.53332 7.81516 7.83936 8.13510 8.20684 8.45741 8.88019 9.47571 10.96923 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031263 B = 0.003170 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.417546 B = 8830.269477 C = 9483.008447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.523 4.523 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.122 3.878 11 N -0.713 5.713 12 C 0.585 3.415 13 O -0.537 6.537 14 C -0.246 4.246 15 C -0.012 4.012 16 O 0.094 5.906 17 N -0.358 5.358 18 C 0.079 3.921 19 C -0.023 4.023 20 C -0.114 4.114 21 C -0.122 4.122 22 C -0.123 4.123 23 C -0.115 4.115 24 H 0.263 0.737 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.396 0.604 30 H 0.227 0.773 31 H 0.116 0.884 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.968 -20.168 0.024 20.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.562 4.562 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.000 4.000 11 N -0.362 5.362 12 C 0.370 3.630 13 O -0.416 6.416 14 C -0.253 4.253 15 C -0.094 4.094 16 O 0.035 5.965 17 N -0.065 5.065 18 C -0.084 4.084 19 C -0.043 4.043 20 C -0.152 4.152 21 C -0.160 4.160 22 C -0.161 4.161 23 C -0.153 4.153 24 H 0.072 0.928 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.230 0.770 30 H 0.243 0.757 31 H 0.134 0.866 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.484 -21.318 0.016 21.463 hybrid contribution -0.045 1.941 -0.025 1.942 sum 2.439 -19.377 -0.009 19.530 Atomic orbital electron populations 1.69943 1.06105 1.26974 1.50256 1.24990 0.94897 0.99448 0.94896 0.86507 0.79856 0.82934 0.78239 1.20528 1.21141 1.19687 1.21032 0.93280 0.90304 1.51541 0.92181 1.19333 0.94189 0.91066 0.97910 1.21807 0.96121 0.80881 1.01149 1.46193 1.10380 1.06287 1.73374 1.16895 0.86805 0.82014 0.77273 1.90745 1.12995 1.87173 1.50686 1.22569 0.93242 0.95621 1.13903 1.26458 0.97677 0.86792 0.98458 1.84567 1.28304 1.16404 1.67270 1.73592 0.92441 1.20280 1.20151 1.24753 0.96978 0.87501 0.99172 1.20493 0.87199 1.00485 0.96079 1.22185 1.01457 0.95120 0.96431 1.22353 1.00448 0.96855 0.96341 1.22488 0.98886 0.98611 0.96079 1.22441 0.99639 0.96567 0.96663 0.92782 0.95880 0.95856 0.92194 0.92194 0.77037 0.75690 0.86605 0.91767 0.90961 0.91572 0.91548 0.91165 0.91438 0.91058 0.91288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.52 13.29 55.43 0.74 -24.78 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.52 -14.10 9.11 -34.44 -0.31 -14.42 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 10 C 0.12 2.47 5.61 -4.04 -0.02 2.45 16 11 N -0.71 -11.71 5.55 -61.39 -0.34 -12.05 16 12 C 0.58 9.78 7.81 -12.54 -0.10 9.68 16 13 O -0.54 -10.65 15.28 5.27 0.08 -10.57 16 14 C -0.25 -3.39 6.47 -102.90 -0.67 -4.05 16 15 C -0.01 -0.12 11.85 30.41 0.36 0.24 16 16 O 0.09 1.09 11.06 18.66 0.21 1.30 16 17 N -0.36 -4.74 11.83 34.78 0.41 -4.33 16 18 C 0.08 1.08 5.79 -79.77 -0.46 0.62 16 19 C -0.02 -0.29 3.36 -90.65 -0.31 -0.60 16 20 C -0.11 -1.25 6.45 -25.61 -0.17 -1.41 16 21 C -0.12 -1.12 6.83 -25.07 -0.17 -1.29 16 22 C -0.12 -1.10 6.91 -24.74 -0.17 -1.27 16 23 C -0.11 -1.25 6.35 -25.08 -0.16 -1.41 16 24 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.40 5.34 7.66 -40.82 -0.31 5.03 16 30 H 0.23 1.34 7.68 -52.49 -0.40 0.94 16 31 H 0.12 1.67 6.34 -51.93 -0.33 1.35 16 32 H 0.06 0.75 7.67 -51.93 -0.40 0.35 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.79 7.71 -51.93 -0.40 0.39 16 LS Contribution 329.48 15.07 4.97 4.97 Total: -1.00 -31.25 329.48 -6.99 -38.24 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -5.61 Total: 1.06 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -2.41 Total: -9.78 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: 0.81 Total: -41.16 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.29 Total: -9.27 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.25 -6.99 -38.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867344888.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.587 kcal (2) G-P(sol) polarization free energy of solvation -31.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds