Wall clock time and date at job start Tue Mar 31 2020 00:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99923 * 2 1 4 4 H 1.48510 * 109.46820 * 270.00155 * 3 2 1 5 5 H 1.48504 * 109.47304 * 29.99651 * 3 2 1 6 6 H 1.48500 * 109.47365 * 150.00071 * 3 2 1 7 7 C 1.37877 * 120.00354 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00356 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99752 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47216 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47435 * 179.97438 * 10 9 7 12 12 C 1.34769 * 120.00140 * 180.02562 * 11 10 9 13 13 O 1.21612 * 120.00071 * 359.97438 * 12 11 10 14 14 C 1.47397 * 120.00186 * 180.02562 * 12 11 10 15 15 C 1.37355 * 128.56383 * 0.02562 * 14 12 11 16 16 O 1.33491 * 106.34296 * 179.97438 * 15 14 12 17 17 N 1.20658 * 113.15590 * 359.70506 * 16 15 14 18 18 C 1.30008 * 112.29988 * 0.49800 * 17 16 15 19 19 C 1.50701 * 127.33477 * 179.79140 * 18 17 16 20 20 C 1.53876 * 110.03013 * 59.69060 * 19 18 17 21 21 C 1.54267 * 106.59870 * 240.71414 * 20 19 18 22 22 C 1.54891 * 104.19324 * 336.39035 * 21 20 19 23 23 C 1.54261 * 110.03593 * 302.52145 * 19 18 17 24 24 H 0.97003 * 120.00626 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47352 * 59.99931 * 9 7 2 26 26 H 1.08996 * 109.47263 * 299.99773 * 9 7 2 27 27 H 1.09003 * 109.46916 * 59.99398 * 10 9 7 28 28 H 1.08996 * 109.47016 * 300.00166 * 10 9 7 29 29 H 0.96998 * 119.99323 * 0.02562 * 11 10 9 30 30 H 1.07999 * 126.83166 * 359.97438 * 15 14 12 31 31 H 1.08998 * 110.05533 * 181.09962 * 19 18 17 32 32 H 1.08995 * 110.03160 * 359.97438 * 20 19 18 33 33 H 1.08998 * 110.03319 * 121.42692 * 20 19 18 34 34 H 1.09004 * 110.48597 * 95.06674 * 21 20 19 35 35 H 1.08994 * 110.48679 * 217.71200 * 21 20 19 36 36 H 1.09005 * 110.75269 * 279.62515 * 22 21 20 37 37 H 1.09004 * 110.91555 * 156.33330 * 22 21 20 38 38 H 1.09000 * 110.48928 * 261.57113 * 23 19 18 39 39 H 1.08999 * 110.48469 * 24.21522 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4002 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 2.1868 -6.0979 0.0018 13 8 3.4029 -6.0979 0.0014 14 6 1.4499 -7.3745 0.0018 15 6 0.0917 -7.5791 0.0008 16 8 -0.0889 -8.9017 0.0008 17 7 0.9460 -9.5219 -0.0041 18 6 1.9875 -8.7438 0.0023 19 6 3.4369 -9.1566 0.0035 20 6 3.7468 -9.9962 -1.2482 21 6 4.2163 -11.3776 -0.7471 22 6 4.7359 -11.1051 0.6864 23 6 3.7289 -10.0570 1.2216 24 1 -0.4851 0.8400 0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8721 -3.6042 0.8905 28 1 2.8720 -3.6043 -0.8894 29 1 0.5429 -4.9308 0.0011 30 1 -0.6773 -6.8208 0.0002 31 1 4.0767 -8.2745 0.0292 32 1 2.8488 -10.1054 -1.8562 33 1 4.5370 -9.5216 -1.8299 34 1 3.3820 -12.0787 -0.7236 35 1 5.0191 -11.7595 -1.3777 36 1 5.7448 -10.6931 0.6597 37 1 4.7066 -12.0123 1.2899 38 1 4.1761 -9.4752 2.0276 39 1 2.8159 -10.5448 1.5630 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867344888.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:28 Heat of formation + Delta-G solvation = -24.933149 kcal Electronic energy + Delta-G solvation = -21012.162199 eV Core-core repulsion = 17728.036764 eV Total energy + Delta-G solvation = -3284.125435 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -45.97688 -40.61243 -39.21605 -36.63540 -34.95129 -34.67912 -33.19487 -31.39040 -29.71381 -29.69451 -27.20262 -25.32720 -23.55023 -22.90176 -21.84196 -21.52845 -20.58225 -19.30174 -18.70328 -18.50611 -17.67307 -16.85781 -16.68175 -16.47368 -16.43896 -16.06010 -15.21664 -14.83171 -14.58108 -14.36720 -14.33679 -14.27597 -13.23223 -12.96553 -12.90957 -12.81109 -12.53498 -12.25159 -12.19931 -12.07330 -11.98902 -11.79709 -11.62044 -11.54143 -11.44730 -11.03645 -10.91895 -10.77250 -10.59617 -10.07009 -8.23650 -6.33317 0.05822 0.70508 1.42848 1.43321 1.54317 1.88495 2.12597 2.28329 2.44910 2.92752 3.11794 3.20175 3.65510 3.65905 3.88017 3.91945 4.01110 4.40793 4.44028 4.48626 4.49680 4.52664 4.55488 4.66045 4.75646 4.83773 4.86036 4.93882 5.00383 5.18418 5.18956 5.22145 5.34837 5.42593 5.48070 5.59692 5.79109 6.16635 6.51336 6.79811 7.13184 7.18528 7.36018 8.88021 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031263 B = 0.003170 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.417546 B = 8830.269477 C = 9483.008447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.961 3.039 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.023 3.977 10 C 0.142 3.858 11 N -0.705 5.705 12 C 0.590 3.410 13 O -0.575 6.575 14 C -0.282 4.282 15 C 0.031 3.969 16 O 0.100 5.900 17 N -0.368 5.368 18 C 0.069 3.931 19 C -0.029 4.029 20 C -0.112 4.112 21 C -0.117 4.117 22 C -0.118 4.118 23 C -0.113 4.113 24 H 0.266 0.734 25 H 0.012 0.988 26 H 0.012 0.988 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.412 0.588 30 H 0.273 0.727 31 H 0.092 0.908 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.610 -20.814 0.023 20.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.786 3.214 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.077 0.923 9 C -0.015 4.015 10 C 0.019 3.981 11 N -0.356 5.356 12 C 0.377 3.623 13 O -0.456 6.456 14 C -0.290 4.290 15 C -0.051 4.051 16 O 0.042 5.958 17 N -0.075 5.075 18 C -0.093 4.093 19 C -0.048 4.048 20 C -0.151 4.151 21 C -0.155 4.155 22 C -0.156 4.156 23 C -0.151 4.151 24 H 0.075 0.925 25 H 0.030 0.970 26 H 0.031 0.969 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.249 0.751 30 H 0.288 0.712 31 H 0.110 0.890 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.101 -21.992 0.014 22.093 hybrid contribution -0.001 2.122 -0.026 2.123 sum 2.100 -19.870 -0.012 19.981 Atomic orbital electron populations 1.70036 1.07428 1.27982 1.51022 1.25814 0.95765 1.02923 0.94478 0.85498 0.78690 0.78715 0.78472 1.19864 1.20606 1.19119 1.21468 0.93619 0.91964 1.51480 0.92336 1.19138 0.94207 0.91434 0.96677 1.21294 0.95123 0.81525 1.00203 1.45903 1.11068 1.05079 1.73539 1.17161 0.86451 0.82696 0.75996 1.90727 1.14775 1.87756 1.52322 1.22274 0.94703 0.94251 1.17767 1.27201 0.97188 0.86773 0.93970 1.84564 1.27694 1.16902 1.66654 1.73598 0.92517 1.20536 1.20841 1.24955 0.97569 0.87675 0.99125 1.20513 0.86550 1.00094 0.97674 1.22182 1.01100 0.96127 0.95664 1.22342 1.00967 0.95555 0.96615 1.22495 0.98470 0.98577 0.96014 1.22425 0.99993 0.96759 0.95949 0.92543 0.96962 0.96933 0.93206 0.93189 0.75149 0.71194 0.89013 0.92674 0.90907 0.91517 0.89882 0.90614 0.89851 0.91397 0.91799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.72 13.29 21.45 0.28 -52.43 16 2 C 0.01 0.50 5.46 84.66 0.46 0.96 16 3 Si 0.96 42.67 29.54 68.60 2.03 44.70 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.55 -29.60 9.11 25.60 0.23 -29.37 16 8 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 9 C 0.02 1.09 5.09 29.85 0.15 1.25 16 10 C 0.14 5.77 5.61 86.38 0.48 6.26 16 11 N -0.71 -22.72 5.55 -466.41 -2.59 -25.31 16 12 C 0.59 19.64 7.81 86.66 0.68 20.32 16 13 O -0.57 -23.35 15.28 -4.07 -0.06 -23.42 16 14 C -0.28 -7.51 6.47 -18.75 -0.12 -7.63 16 15 C 0.03 0.55 11.85 67.61 0.80 1.35 16 16 O 0.10 2.09 11.06 77.00 0.85 2.95 16 17 N -0.37 -9.30 11.83 -44.79 -0.53 -9.83 16 18 C 0.07 1.87 5.79 45.16 0.26 2.13 16 19 C -0.03 -0.74 3.36 -10.82 -0.04 -0.77 16 20 C -0.11 -2.45 6.45 31.32 0.20 -2.24 16 21 C -0.12 -1.98 6.83 31.67 0.22 -1.76 16 22 C -0.12 -1.95 6.91 31.89 0.22 -1.73 16 23 C -0.11 -2.43 6.35 31.67 0.20 -2.23 16 24 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 25 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.41 10.44 7.66 -92.71 -0.71 9.73 16 30 H 0.27 2.02 7.68 -2.91 -0.02 2.00 16 31 H 0.09 2.79 6.34 -2.39 -0.02 2.77 16 32 H 0.05 1.28 7.67 -2.39 -0.02 1.26 16 33 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.08 1.13 8.14 -2.39 -0.02 1.12 16 36 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 37 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.06 1.43 7.71 -2.39 -0.02 1.41 16 Total: -1.00 -67.64 329.48 4.08 -63.56 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 0.35 Total: 13.25 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: 3.75 Total: -13.46 kcal Atomic # 7 Polarization: -84.74 SS G_CDS: -2.83 Total: -87.57 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: 0.79 Total: -20.47 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -67.64 4.08 -63.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867344888.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.625 kcal (2) G-P(sol) polarization free energy of solvation -67.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds