Wall clock time and date at job start Mon Mar 30 2020 23:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48503 * 109.47155 * 240.00536 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46879 * 120.00539 * 3 2 1 7 7 C 1.37879 * 119.99506 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99452 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00258 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47055 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 7 12 12 O 1.45202 * 109.46867 * 180.02562 * 11 10 9 13 13 C 1.34809 * 116.99600 * 180.02562 * 12 11 10 14 14 O 1.21530 * 120.00249 * 359.97438 * 13 12 11 15 15 C 1.47265 * 119.99803 * 179.97438 * 13 12 11 16 16 N 1.31920 * 125.94191 * 0.02562 * 15 13 12 17 17 C 1.33317 * 109.15133 * 179.91106 * 16 15 13 18 18 C 1.34936 * 108.16954 * 359.97438 * 17 16 15 19 19 N 1.35627 * 107.37388 * 359.84452 * 18 17 16 20 20 C 1.46453 * 124.57515 * 179.50520 * 19 18 17 21 21 C 1.53282 * 108.81742 * 343.27824 * 20 19 18 22 22 C 1.53144 * 109.60334 * 50.30156 * 21 20 19 23 23 C 1.50758 * 128.31316 * 180.09283 * 18 17 16 24 24 H 0.96999 * 119.99910 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47197 * 60.00848 * 9 7 2 26 26 H 1.09001 * 109.47328 * 300.00375 * 9 7 2 27 27 H 1.09001 * 109.47502 * 60.00512 * 10 9 7 28 28 H 1.09001 * 109.47289 * 300.00308 * 10 9 7 29 29 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 30 30 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 31 31 H 1.08006 * 125.91319 * 179.97438 * 17 16 15 32 32 H 1.09004 * 109.72194 * 223.37792 * 20 19 18 33 33 H 1.08999 * 109.51198 * 103.05316 * 20 19 18 34 34 H 1.08996 * 109.44833 * 290.25873 * 21 20 19 35 35 H 1.08996 * 109.44640 * 170.34180 * 21 20 19 36 36 H 1.09000 * 109.50949 * 170.60710 * 22 21 20 37 37 H 1.09002 * 109.50573 * 50.46831 * 22 21 20 38 38 H 1.09001 * 109.73170 * 283.88919 * 23 18 17 39 39 H 1.08993 * 109.72927 * 44.57727 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 8 2.4236 -6.0908 -0.0006 13 6 1.9083 -7.3365 -0.0016 14 8 0.7035 -7.4957 -0.0024 15 6 2.8053 -8.5044 -0.0016 16 7 4.1240 -8.4679 -0.0002 17 6 4.5961 -9.7147 0.0012 18 6 3.5461 -10.5622 0.0013 19 7 2.4180 -9.8092 0.0034 20 6 1.0573 -10.3508 -0.0062 21 6 1.1134 -11.8211 -0.4358 22 6 2.1623 -12.5608 0.3996 23 6 3.5617 -12.0696 0.0046 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5568 -0.8903 26 1 0.6245 -2.5571 0.8896 27 1 2.8717 -3.6045 0.8895 28 1 2.8718 -3.6044 -0.8905 29 1 0.8531 -5.0451 0.8886 30 1 0.8537 -5.0446 -0.8913 31 1 5.6385 -9.9974 0.0021 32 1 0.4423 -9.7880 -0.7085 33 1 0.6295 -10.2783 0.9937 34 1 1.3812 -11.8811 -1.4906 35 1 0.1372 -12.2814 -0.2829 36 1 2.0866 -13.6322 0.2134 37 1 1.9917 -12.3615 1.4575 38 1 3.8134 -12.4372 -0.9902 39 1 4.2950 -12.4284 0.7267 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870012053.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:17 Heat of formation + Delta-G solvation = -46.009567 kcal Electronic energy + Delta-G solvation = -20808.207803 eV Core-core repulsion = 17523.168426 eV Total energy + Delta-G solvation = -3285.039377 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.79609 -39.95364 -37.13283 -36.50533 -33.96616 -33.31028 -31.73384 -31.01832 -28.80704 -27.02603 -25.05926 -24.08805 -22.85315 -22.25239 -20.83648 -20.30201 -19.34179 -17.81433 -17.11346 -16.74896 -16.24445 -15.95222 -15.52239 -14.85493 -14.57542 -14.47774 -14.44805 -14.17824 -13.89326 -13.64754 -13.14733 -12.47078 -12.16906 -12.12409 -11.87413 -11.63786 -11.57496 -11.50853 -10.92948 -10.78750 -10.60783 -10.53752 -10.39573 -10.29452 -9.94317 -9.69136 -9.49638 -9.14960 -8.67206 -8.35468 -6.00701 -4.03389 1.03743 1.97279 2.29967 3.00545 3.19085 3.35627 3.39305 3.42613 3.97815 4.10347 4.20609 4.29044 4.40249 4.49101 4.78230 4.89051 4.90370 5.01000 5.17888 5.24095 5.28548 5.35296 5.38584 5.43270 5.58381 5.59312 5.62429 5.96651 6.03402 6.34247 6.38149 6.58406 6.64129 6.81027 7.01908 7.50894 7.63262 7.74240 7.90738 7.97915 8.39256 9.02667 9.60693 11.10814 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.047725 B = 0.002734 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.558580 B =10237.278856 C =10759.629794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.025 3.975 10 C -0.109 4.109 11 C 0.069 3.931 12 O -0.327 6.327 13 C 0.557 3.443 14 O -0.513 6.513 15 C 0.154 3.846 16 N -0.414 5.414 17 C -0.024 4.024 18 C 0.007 3.993 19 N -0.408 5.408 20 C 0.098 3.902 21 C -0.136 4.136 22 C -0.128 4.128 23 C -0.048 4.048 24 H 0.262 0.738 25 H 0.020 0.980 26 H 0.019 0.981 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.181 0.819 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.271 -28.857 -0.087 29.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.147 4.147 11 C -0.004 4.004 12 O -0.241 6.241 13 C 0.400 3.600 14 O -0.402 6.402 15 C -0.101 4.101 16 N -0.136 5.136 17 C -0.178 4.178 18 C -0.113 4.113 19 N -0.091 5.091 20 C -0.023 4.023 21 C -0.173 4.173 22 C -0.166 4.166 23 C -0.086 4.086 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.198 0.802 32 H 0.124 0.876 33 H 0.110 0.890 34 H 0.095 0.905 35 H 0.110 0.890 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.958 -27.940 -0.079 28.219 hybrid contribution -0.236 0.305 0.012 0.386 sum 3.722 -27.635 -0.067 27.885 Atomic orbital electron populations 1.69958 1.06089 1.26846 1.50613 1.25029 0.94885 0.99358 0.95206 0.86596 0.79518 0.82825 0.78712 1.20151 1.21298 1.20158 1.21147 0.93164 0.90651 1.50953 0.92395 1.19048 0.93805 0.90681 0.97667 1.21787 0.99979 0.90555 1.02347 1.23660 0.91182 0.83246 1.02335 1.86671 1.41661 1.13513 1.82233 1.18995 0.84819 0.82987 0.73206 1.90860 1.15136 1.86998 1.47156 1.21117 0.90423 0.83213 1.15391 1.70573 1.05392 1.23785 1.13812 1.22163 0.99253 0.87456 1.08886 1.21412 0.86215 0.95280 1.08433 1.44985 1.07983 1.05337 1.50791 1.22248 0.80059 0.95314 1.04719 1.21954 1.01204 0.93014 1.01173 1.21704 0.93795 1.00650 1.00454 1.20340 0.98367 0.86476 1.03424 0.92867 0.96210 0.96216 0.91896 0.91902 0.91220 0.91209 0.80221 0.87614 0.88952 0.90525 0.88988 0.90093 0.91100 0.89335 0.88782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.15 13.29 55.43 0.74 -26.42 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.91 29.54 -169.99 -5.02 16.88 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.03 0.66 4.97 -27.89 -0.14 0.52 16 10 C -0.11 -2.36 5.53 -26.73 -0.15 -2.51 16 11 C 0.07 1.32 5.48 37.16 0.20 1.53 16 12 O -0.33 -6.22 10.23 -40.79 -0.42 -6.63 16 13 C 0.56 9.74 7.96 34.40 0.27 10.02 16 14 O -0.51 -9.17 15.04 -19.29 -0.29 -9.46 16 15 C 0.15 2.40 7.84 -154.84 -1.21 1.18 16 16 N -0.41 -6.51 11.27 -11.46 -0.13 -6.64 16 17 C -0.02 -0.27 11.82 -18.08 -0.21 -0.49 16 18 C 0.01 0.06 6.57 -82.06 -0.54 -0.47 16 19 N -0.41 -4.85 3.14 -110.09 -0.35 -5.19 16 20 C 0.10 0.88 6.09 -3.92 -0.02 0.86 16 21 C -0.14 -0.74 5.93 -26.51 -0.16 -0.89 16 22 C -0.13 -0.58 5.96 -26.41 -0.16 -0.74 16 23 C -0.05 -0.26 6.31 -27.61 -0.17 -0.43 16 24 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 28 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 30 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 31 H 0.18 1.47 8.06 -52.48 -0.42 1.04 16 32 H 0.11 1.05 7.28 -51.93 -0.38 0.68 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.42 8.12 -51.93 -0.42 0.00 16 35 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 38 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 330.03 15.07 4.97 4.97 Total: -1.00 -33.76 330.03 -9.03 -42.79 By element: Atomic # 1 Polarization: 0.69 SS G_CDS: -5.84 Total: -5.14 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -2.70 Total: -5.16 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.26 Total: -38.25 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.71 Total: -16.10 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.76 -9.03 -42.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870012053.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.217 kcal (2) G-P(sol) polarization free energy of solvation -33.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds