Wall clock time and date at job start Mon Mar 30 2020 23:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48503 * 109.47155 * 240.00536 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46879 * 120.00539 * 3 2 1 7 7 C 1.37879 * 119.99506 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99452 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00258 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47055 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 7 12 12 O 1.45202 * 109.46867 * 180.02562 * 11 10 9 13 13 C 1.34809 * 116.99600 * 180.02562 * 12 11 10 14 14 O 1.21530 * 120.00249 * 359.97438 * 13 12 11 15 15 C 1.47265 * 119.99803 * 179.97438 * 13 12 11 16 16 N 1.31920 * 125.94191 * 0.02562 * 15 13 12 17 17 C 1.33317 * 109.15133 * 179.91106 * 16 15 13 18 18 C 1.34936 * 108.16954 * 359.97438 * 17 16 15 19 19 N 1.35627 * 107.37388 * 359.84452 * 18 17 16 20 20 C 1.46453 * 124.57515 * 179.50520 * 19 18 17 21 21 C 1.53282 * 108.81742 * 343.27824 * 20 19 18 22 22 C 1.53144 * 109.60334 * 50.30156 * 21 20 19 23 23 C 1.50758 * 128.31316 * 180.09283 * 18 17 16 24 24 H 0.96999 * 119.99910 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47197 * 60.00848 * 9 7 2 26 26 H 1.09001 * 109.47328 * 300.00375 * 9 7 2 27 27 H 1.09001 * 109.47502 * 60.00512 * 10 9 7 28 28 H 1.09001 * 109.47289 * 300.00308 * 10 9 7 29 29 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 30 30 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 31 31 H 1.08006 * 125.91319 * 179.97438 * 17 16 15 32 32 H 1.09004 * 109.72194 * 223.37792 * 20 19 18 33 33 H 1.08999 * 109.51198 * 103.05316 * 20 19 18 34 34 H 1.08996 * 109.44833 * 290.25873 * 21 20 19 35 35 H 1.08996 * 109.44640 * 170.34180 * 21 20 19 36 36 H 1.09000 * 109.50949 * 170.60710 * 22 21 20 37 37 H 1.09002 * 109.50573 * 50.46831 * 22 21 20 38 38 H 1.09001 * 109.73170 * 283.88919 * 23 18 17 39 39 H 1.08993 * 109.72927 * 44.57727 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 8 2.4236 -6.0908 -0.0006 13 6 1.9083 -7.3365 -0.0016 14 8 0.7035 -7.4957 -0.0024 15 6 2.8053 -8.5044 -0.0016 16 7 4.1240 -8.4679 -0.0002 17 6 4.5961 -9.7147 0.0012 18 6 3.5461 -10.5622 0.0013 19 7 2.4180 -9.8092 0.0034 20 6 1.0573 -10.3508 -0.0062 21 6 1.1134 -11.8211 -0.4358 22 6 2.1623 -12.5608 0.3996 23 6 3.5617 -12.0696 0.0046 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5568 -0.8903 26 1 0.6245 -2.5571 0.8896 27 1 2.8717 -3.6045 0.8895 28 1 2.8718 -3.6044 -0.8905 29 1 0.8531 -5.0451 0.8886 30 1 0.8537 -5.0446 -0.8913 31 1 5.6385 -9.9974 0.0021 32 1 0.4423 -9.7880 -0.7085 33 1 0.6295 -10.2783 0.9937 34 1 1.3812 -11.8811 -1.4906 35 1 0.1372 -12.2814 -0.2829 36 1 2.0866 -13.6322 0.2134 37 1 1.9917 -12.3615 1.4575 38 1 3.8134 -12.4372 -0.9902 39 1 4.2950 -12.4284 0.7267 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870012053.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:16 Heat of formation + Delta-G solvation = -65.515268 kcal Electronic energy + Delta-G solvation = -20809.053634 eV Core-core repulsion = 17523.168426 eV Total energy + Delta-G solvation = -3285.885208 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.71424 -41.34836 -38.01975 -37.72038 -35.97310 -34.03528 -33.73433 -31.84571 -29.85430 -28.75620 -26.07691 -25.20232 -24.38070 -22.97777 -22.22887 -21.92876 -20.05689 -18.98731 -18.69613 -18.10871 -17.98497 -17.00584 -16.67866 -16.49577 -15.74380 -15.28746 -15.11581 -14.98315 -14.92449 -14.76011 -14.31162 -14.09267 -13.91237 -13.79757 -13.07779 -12.82597 -12.56311 -12.49456 -12.29459 -12.15384 -11.99534 -11.96551 -11.78868 -11.52835 -11.48678 -11.29794 -11.25211 -10.86830 -10.57557 -9.55328 -8.22701 -6.34176 -0.07726 0.88855 1.30142 1.40891 1.44407 1.52354 1.93726 2.07601 2.40972 3.10985 3.12611 3.44778 3.53377 3.71576 3.81310 3.93942 3.96430 4.07965 4.19687 4.28326 4.34485 4.48381 4.56814 4.73219 4.75196 4.81480 4.86005 4.96768 5.01478 5.10336 5.17688 5.24736 5.27903 5.46432 5.51537 5.61442 5.75957 5.78448 6.17478 6.31743 6.77454 6.80863 7.35038 8.89403 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.047725 B = 0.002734 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.558580 B =10237.278856 C =10759.629794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.063 0.937 9 C 0.029 3.971 10 C -0.094 4.094 11 C 0.079 3.921 12 O -0.339 6.339 13 C 0.555 3.445 14 O -0.527 6.527 15 C 0.105 3.895 16 N -0.447 5.447 17 C -0.040 4.040 18 C 0.033 3.967 19 N -0.404 5.404 20 C 0.089 3.911 21 C -0.129 4.129 22 C -0.126 4.126 23 C -0.048 4.048 24 H 0.265 0.735 25 H 0.000 1.000 26 H 0.000 1.000 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.211 0.789 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.065 0.935 38 H 0.111 0.889 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.720 -31.300 -0.108 31.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.081 0.919 9 C -0.008 4.008 10 C -0.132 4.132 11 C 0.006 3.994 12 O -0.253 6.253 13 C 0.399 3.601 14 O -0.417 6.417 15 C -0.147 4.147 16 N -0.170 5.170 17 C -0.194 4.194 18 C -0.089 4.089 19 N -0.087 5.087 20 C -0.032 4.032 21 C -0.166 4.166 22 C -0.164 4.164 23 C -0.085 4.085 24 H 0.074 0.926 25 H 0.018 0.982 26 H 0.018 0.982 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.228 0.772 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.097 0.903 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.084 0.916 38 H 0.129 0.871 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.390 -30.390 -0.100 30.864 hybrid contribution -0.662 0.889 0.020 1.108 sum 4.729 -29.501 -0.080 29.878 Atomic orbital electron populations 1.70088 1.07821 1.28048 1.51324 1.26002 0.95824 1.03473 0.94502 0.85437 0.78219 0.77745 0.79278 1.19088 1.20703 1.19101 1.21587 0.93718 0.91928 1.51135 0.91865 1.18912 0.94115 0.92118 0.95681 1.21480 0.98883 0.90311 1.02526 1.23329 0.90764 0.82873 1.02480 1.86630 1.41562 1.14226 1.82873 1.19329 0.85204 0.82882 0.72638 1.90831 1.15691 1.87045 1.48107 1.20682 0.90376 0.83862 1.19783 1.70467 1.05815 1.26440 1.14277 1.22817 1.01230 0.86378 1.09006 1.22291 0.84860 0.97407 1.04295 1.45232 1.09569 1.04328 1.49546 1.22503 0.78640 0.97580 1.04480 1.21997 1.03016 0.90224 1.01381 1.21745 0.92626 1.02123 0.99861 1.20659 0.99751 0.82622 1.05501 0.92602 0.98186 0.98201 0.91650 0.91647 0.91129 0.91100 0.77218 0.89300 0.88930 0.90285 0.86850 0.87148 0.91572 0.87122 0.86311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.56 13.29 21.45 0.28 -57.28 16 2 C 0.00 0.00 5.46 84.65 0.46 0.46 16 3 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 7 C -0.55 -31.82 9.11 25.60 0.23 -31.59 16 8 H 0.06 3.53 7.74 -2.91 -0.02 3.51 16 9 C 0.03 1.57 4.97 29.85 0.15 1.72 16 10 C -0.09 -4.21 5.53 30.60 0.17 -4.04 16 11 C 0.08 3.16 5.48 71.98 0.39 3.56 16 12 O -0.34 -13.40 10.23 -57.20 -0.58 -13.99 16 13 C 0.56 20.31 7.96 70.20 0.56 20.87 16 14 O -0.53 -19.75 15.04 19.74 0.30 -19.46 16 15 C 0.11 3.35 7.84 136.33 1.07 4.42 16 16 N -0.45 -14.18 11.27 -190.18 -2.14 -16.32 16 17 C -0.04 -0.86 11.82 83.71 0.99 0.13 16 18 C 0.03 0.58 6.57 41.23 0.27 0.85 16 19 N -0.40 -9.36 3.14 -502.21 -1.58 -10.94 16 20 C 0.09 1.53 6.09 86.48 0.53 2.06 16 21 C -0.13 -1.03 5.93 30.74 0.18 -0.85 16 22 C -0.13 -0.63 5.96 30.80 0.18 -0.44 16 23 C -0.05 -0.30 6.31 30.03 0.19 -0.11 16 24 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 25 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 26 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 27 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 28 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 29 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 30 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 31 H 0.21 2.89 8.06 -2.91 -0.02 2.87 16 32 H 0.09 1.83 7.28 -2.38 -0.02 1.81 16 33 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.08 0.64 8.12 -2.39 -0.02 0.62 16 35 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 37 H 0.07 0.44 8.12 -2.39 -0.02 0.42 16 38 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 Total: -1.00 -75.42 330.03 4.71 -70.71 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: 1.03 Total: 3.23 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: 5.38 Total: -2.97 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -3.44 Total: -84.53 kcal Atomic # 8 Polarization: -33.16 SS G_CDS: -0.29 Total: -33.45 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -75.42 4.71 -70.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870012053.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.194 kcal (2) G-P(sol) polarization free energy of solvation -75.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds