Wall clock time and date at job start Tue Mar 31 2020 00:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99869 * 2 1 4 4 H 1.48506 * 109.46962 * 269.99813 * 3 2 1 5 5 H 1.48494 * 109.47127 * 29.99898 * 3 2 1 6 6 H 1.48495 * 109.47105 * 150.00071 * 3 2 1 7 7 C 1.37874 * 119.99696 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00276 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99735 * 180.02562 * 7 2 1 10 10 C 1.52992 * 109.47230 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47519 * 179.97438 * 10 9 7 12 12 O 1.45195 * 109.47430 * 180.02562 * 11 10 9 13 13 C 1.34750 * 116.99954 * 180.02562 * 12 11 10 14 14 O 1.21529 * 120.00437 * 0.02562 * 13 12 11 15 15 C 1.47291 * 120.00183 * 179.97438 * 13 12 11 16 16 C 1.41346 * 126.42427 * 0.02562 * 15 13 12 17 17 N 1.30429 * 108.01346 * 179.97438 * 16 15 13 18 18 N 1.39933 * 108.91863 * 359.74679 * 17 16 15 19 19 C 1.46498 * 125.74757 * 180.27030 * 18 17 16 20 20 C 1.52999 * 109.47118 * 305.18751 * 19 18 17 21 21 C 1.53006 * 117.49465 * 243.74322 * 20 19 18 22 22 C 1.52995 * 117.49897 * 175.08575 * 20 19 18 23 23 C 1.34228 * 108.51218 * 0.43017 * 18 17 16 24 24 H 0.97001 * 120.00070 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47341 * 59.99319 * 9 7 2 26 26 H 1.09008 * 109.46667 * 299.99658 * 9 7 2 27 27 H 1.09009 * 109.47156 * 59.99828 * 10 9 7 28 28 H 1.08999 * 109.47365 * 299.99845 * 10 9 7 29 29 H 1.09001 * 109.46736 * 59.99759 * 11 10 9 30 30 H 1.08999 * 109.47137 * 300.00549 * 11 10 9 31 31 H 1.08000 * 125.99074 * 359.96308 * 16 15 13 32 32 H 1.09004 * 109.46495 * 65.18033 * 19 18 17 33 33 H 1.08992 * 109.47218 * 185.18197 * 19 18 17 34 34 H 1.09003 * 115.55022 * 29.40919 * 20 19 18 35 35 H 1.09000 * 117.49954 * 359.97438 * 21 20 19 36 36 H 1.09005 * 117.49822 * 145.01447 * 21 20 19 37 37 H 1.09001 * 117.49999 * 214.97594 * 22 20 19 38 38 H 1.08997 * 117.50067 * 359.97332 * 22 20 19 39 39 H 1.08002 * 126.29923 * 179.84925 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6365 -0.0001 11 6 5.5515 -2.6366 -0.0001 12 8 6.0355 -4.0055 -0.0009 13 6 7.3714 -4.1820 -0.0005 14 8 8.1118 -3.2183 0.0009 15 6 7.9344 -5.5431 -0.0006 16 6 7.2042 -6.7534 -0.0016 17 7 8.0579 -7.7395 -0.0019 18 7 9.3557 -7.2160 -0.0070 19 6 10.5941 -7.9986 -0.0145 20 6 10.5868 -8.9762 1.1624 21 6 11.6576 -8.7926 2.2398 22 6 11.7471 -9.9684 1.2638 23 6 9.2749 -5.8762 -0.0002 24 1 -0.4850 0.8400 0.0004 25 1 3.8745 -0.6807 0.8904 26 1 3.8751 -0.6797 -0.8896 27 1 3.6585 -3.1502 -0.8904 28 1 3.6579 -3.1506 0.8896 29 1 5.9148 -2.1228 0.8899 30 1 5.9148 -2.1226 -0.8900 31 1 6.1282 -6.8454 -0.0019 32 1 10.6663 -8.5553 -0.9489 33 1 11.4484 -7.3277 0.0757 34 1 9.6029 -9.3178 1.4837 35 1 12.3674 -7.9756 2.1100 36 1 11.3781 -9.0138 3.2700 37 1 11.5265 -10.9627 1.6521 38 1 12.5153 -9.9250 0.4918 39 1 10.1052 -5.1856 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870087880.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:21 Heat of formation + Delta-G solvation = 3.137254 kcal Electronic energy + Delta-G solvation = -20042.581203 eV Core-core repulsion = 16759.672992 eV Total energy + Delta-G solvation = -3282.908211 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.66483 -39.74698 -38.05750 -36.30854 -34.02575 -33.34824 -31.80637 -30.68692 -28.17090 -27.22559 -23.91064 -22.98527 -22.50066 -22.09884 -20.77366 -20.38087 -19.96633 -18.19451 -16.96144 -16.62979 -16.35787 -16.14184 -15.76234 -15.35994 -14.68635 -14.37309 -14.20258 -13.99937 -13.49399 -13.12240 -13.01768 -12.70428 -12.34214 -12.20276 -12.11491 -11.89949 -11.32848 -11.06070 -11.00817 -10.88346 -10.69215 -10.41231 -10.34757 -9.95522 -9.88182 -9.75193 -9.68467 -9.21236 -9.01174 -8.53847 -6.04130 -4.02837 1.17620 1.89063 1.93574 2.99931 3.17402 3.22304 3.32319 3.39758 3.43621 3.81376 4.20053 4.30102 4.41217 4.45177 4.45744 4.63522 4.81506 4.87259 4.95489 5.06497 5.20673 5.29345 5.31208 5.50056 5.52030 5.53995 5.58137 5.61134 5.94356 6.17553 6.44298 6.44753 6.45302 6.74240 6.87481 7.24969 7.26311 7.37137 7.76246 8.03855 8.53087 9.00534 9.57544 11.09040 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.050364 B = 0.002401 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.823150 B =11658.693639 C =11949.744343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.101 4.101 11 C 0.069 3.931 12 O -0.351 6.351 13 C 0.540 3.460 14 O -0.527 6.527 15 C -0.276 4.276 16 C 0.105 3.895 17 N -0.298 5.298 18 N -0.358 5.358 19 C 0.162 3.838 20 C -0.173 4.173 21 C -0.178 4.178 22 C -0.168 4.168 23 C 0.134 3.866 24 H 0.263 0.737 25 H 0.019 0.981 26 H 0.015 0.985 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.200 0.800 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.120 0.880 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.708 -18.603 1.235 31.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.558 4.558 8 H 0.092 0.908 9 C -0.049 4.049 10 C -0.139 4.139 11 C -0.005 4.005 12 O -0.267 6.267 13 C 0.386 3.614 14 O -0.417 6.417 15 C -0.289 4.289 16 C -0.083 4.083 17 N -0.117 5.117 18 N -0.136 5.136 19 C 0.042 3.958 20 C -0.191 4.191 21 C -0.215 4.215 22 C -0.206 4.206 23 C -0.018 4.018 24 H 0.073 0.927 25 H 0.037 0.963 26 H 0.033 0.967 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.217 0.783 32 H 0.114 0.886 33 H 0.119 0.881 34 H 0.139 0.861 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 26.005 -19.544 1.230 32.554 hybrid contribution 0.280 1.997 0.004 2.017 sum 26.285 -17.546 1.234 31.628 Atomic orbital electron populations 1.69911 1.06273 1.26928 1.50970 1.25022 0.94765 0.99184 0.94525 0.86779 0.80387 0.83581 0.78576 1.20228 1.21334 1.18954 1.21066 0.89082 0.94650 1.51030 0.90778 1.19525 0.97482 0.91182 0.96666 1.21555 0.88825 1.00688 1.02840 1.23470 0.96904 0.78029 1.02059 1.86530 1.22553 1.34067 1.83587 1.19935 0.81215 0.87926 0.72368 1.90817 1.60775 1.42401 1.47742 1.19415 0.92430 0.92283 1.24785 1.24319 1.00543 0.88540 0.94868 1.77216 0.86579 1.22703 1.25198 1.48509 1.06520 1.04166 1.54365 1.21419 0.81589 0.93494 0.99328 1.22565 0.96803 1.01411 0.98365 1.23146 1.01376 1.00782 0.96160 1.22994 0.99778 0.95230 1.02568 1.22942 0.98169 0.85525 0.95148 0.92688 0.96283 0.96710 0.91519 0.91490 0.91563 0.91573 0.78290 0.88632 0.88079 0.86150 0.88418 0.88381 0.88168 0.88331 0.79334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.92 13.96 55.43 0.77 -27.14 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 7 C -0.52 -14.89 9.66 -34.44 -0.33 -15.22 16 8 H 0.07 2.26 7.99 -52.49 -0.42 1.85 16 9 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 10 C -0.10 -2.04 5.53 -26.73 -0.15 -2.18 16 11 C 0.07 1.22 5.48 37.16 0.20 1.42 16 12 O -0.35 -5.84 10.07 -40.63 -0.41 -6.25 16 13 C 0.54 8.48 7.95 34.41 0.27 8.76 16 14 O -0.53 -9.37 16.69 -19.29 -0.32 -9.69 16 15 C -0.28 -3.48 6.13 -105.08 -0.64 -4.13 16 16 C 0.11 1.22 11.87 -16.97 -0.20 1.02 16 17 N -0.30 -3.37 12.13 30.87 0.37 -2.99 16 18 N -0.36 -3.25 3.65 -60.80 -0.22 -3.47 16 19 C 0.16 0.88 6.77 -4.04 -0.03 0.86 16 20 C -0.17 -1.00 5.92 -90.62 -0.54 -1.54 16 21 C -0.18 -0.84 10.18 -26.69 -0.27 -1.11 16 22 C -0.17 -0.69 10.25 -26.70 -0.27 -0.96 16 23 C 0.13 1.31 11.25 -16.55 -0.19 1.13 16 24 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 25 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 26 H 0.01 0.34 7.57 -51.92 -0.39 -0.05 16 27 H 0.07 1.33 8.14 -51.92 -0.42 0.90 16 28 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.20 1.95 8.06 -52.49 -0.42 1.53 16 32 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.10 0.30 7.79 -51.93 -0.40 -0.11 16 34 H 0.12 0.95 7.89 -51.93 -0.41 0.54 16 35 H 0.10 0.37 8.03 -51.93 -0.42 -0.05 16 36 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.19 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 341.25 15.07 5.14 5.14 Total: -1.00 -34.03 341.25 -7.50 -41.52 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -5.81 Total: -3.78 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -2.35 Total: -10.49 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 0.93 Total: -33.61 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.73 Total: -15.95 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.03 -7.50 -41.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870087880.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.661 kcal (2) G-P(sol) polarization free energy of solvation -34.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds