Wall clock time and date at job start Tue Mar 31 2020 00:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99869 * 2 1 4 4 H 1.48506 * 109.46962 * 269.99813 * 3 2 1 5 5 H 1.48494 * 109.47127 * 29.99898 * 3 2 1 6 6 H 1.48495 * 109.47105 * 150.00071 * 3 2 1 7 7 C 1.37874 * 119.99696 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00276 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99735 * 180.02562 * 7 2 1 10 10 C 1.52992 * 109.47230 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47519 * 179.97438 * 10 9 7 12 12 O 1.45195 * 109.47430 * 180.02562 * 11 10 9 13 13 C 1.34750 * 116.99954 * 180.02562 * 12 11 10 14 14 O 1.21529 * 120.00437 * 0.02562 * 13 12 11 15 15 C 1.47291 * 120.00183 * 179.97438 * 13 12 11 16 16 C 1.41346 * 126.42427 * 0.02562 * 15 13 12 17 17 N 1.30429 * 108.01346 * 179.97438 * 16 15 13 18 18 N 1.39933 * 108.91863 * 359.74679 * 17 16 15 19 19 C 1.46498 * 125.74757 * 180.27030 * 18 17 16 20 20 C 1.52999 * 109.47118 * 305.18751 * 19 18 17 21 21 C 1.53006 * 117.49465 * 243.74322 * 20 19 18 22 22 C 1.52995 * 117.49897 * 175.08575 * 20 19 18 23 23 C 1.34228 * 108.51218 * 0.43017 * 18 17 16 24 24 H 0.97001 * 120.00070 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47341 * 59.99319 * 9 7 2 26 26 H 1.09008 * 109.46667 * 299.99658 * 9 7 2 27 27 H 1.09009 * 109.47156 * 59.99828 * 10 9 7 28 28 H 1.08999 * 109.47365 * 299.99845 * 10 9 7 29 29 H 1.09001 * 109.46736 * 59.99759 * 11 10 9 30 30 H 1.08999 * 109.47137 * 300.00549 * 11 10 9 31 31 H 1.08000 * 125.99074 * 359.96308 * 16 15 13 32 32 H 1.09004 * 109.46495 * 65.18033 * 19 18 17 33 33 H 1.08992 * 109.47218 * 185.18197 * 19 18 17 34 34 H 1.09003 * 115.55022 * 29.40919 * 20 19 18 35 35 H 1.09000 * 117.49954 * 359.97438 * 21 20 19 36 36 H 1.09005 * 117.49822 * 145.01447 * 21 20 19 37 37 H 1.09001 * 117.49999 * 214.97594 * 22 20 19 38 38 H 1.08997 * 117.50067 * 359.97332 * 22 20 19 39 39 H 1.08002 * 126.29923 * 179.84925 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6365 -0.0001 11 6 5.5515 -2.6366 -0.0001 12 8 6.0355 -4.0055 -0.0009 13 6 7.3714 -4.1820 -0.0005 14 8 8.1118 -3.2183 0.0009 15 6 7.9344 -5.5431 -0.0006 16 6 7.2042 -6.7534 -0.0016 17 7 8.0579 -7.7395 -0.0019 18 7 9.3557 -7.2160 -0.0070 19 6 10.5941 -7.9986 -0.0145 20 6 10.5868 -8.9762 1.1624 21 6 11.6576 -8.7926 2.2398 22 6 11.7471 -9.9684 1.2638 23 6 9.2749 -5.8762 -0.0002 24 1 -0.4850 0.8400 0.0004 25 1 3.8745 -0.6807 0.8904 26 1 3.8751 -0.6797 -0.8896 27 1 3.6585 -3.1502 -0.8904 28 1 3.6579 -3.1506 0.8896 29 1 5.9148 -2.1228 0.8899 30 1 5.9148 -2.1226 -0.8900 31 1 6.1282 -6.8454 -0.0019 32 1 10.6663 -8.5553 -0.9489 33 1 11.4484 -7.3277 0.0757 34 1 9.6029 -9.3178 1.4837 35 1 12.3674 -7.9756 2.1100 36 1 11.3781 -9.0138 3.2700 37 1 11.5265 -10.9627 1.6521 38 1 12.5153 -9.9250 0.4918 39 1 10.1052 -5.1856 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870087880.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:21 Heat of formation + Delta-G solvation = -16.615973 kcal Electronic energy + Delta-G solvation = -20043.437767 eV Core-core repulsion = 16759.672992 eV Total energy + Delta-G solvation = -3283.764775 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.49196 -40.97072 -38.46974 -37.64876 -35.88487 -34.10815 -33.76191 -31.59045 -29.55009 -28.30814 -25.33421 -23.84179 -23.30418 -22.80974 -22.04268 -21.45601 -21.02625 -19.08223 -18.97407 -17.85212 -17.59296 -17.04057 -16.55172 -16.27578 -16.02357 -15.58193 -15.26815 -14.84302 -14.79253 -14.45349 -14.08810 -13.92787 -13.72436 -13.68466 -12.83511 -12.78725 -12.56634 -12.41280 -12.27124 -12.01227 -11.88502 -11.73601 -11.47210 -11.37180 -11.31717 -11.29122 -11.08095 -10.75793 -10.62610 -9.86876 -8.28507 -6.33334 0.29955 1.00041 1.21260 1.38355 1.39950 1.51971 1.84845 2.15802 2.37430 2.81126 3.06545 3.29369 3.69199 3.76760 3.90256 3.95789 3.98946 4.05994 4.09316 4.14391 4.22151 4.42934 4.49275 4.54108 4.61389 4.77524 4.78339 4.86164 4.99187 4.99634 5.17097 5.22056 5.31975 5.39598 5.52142 5.56364 5.64816 5.78321 6.27874 6.42706 6.73790 6.82434 7.30948 8.88006 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.050364 B = 0.002401 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.823150 B =11658.693639 C =11949.744343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.003 3.997 3 Si 0.951 3.049 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.245 1.245 7 C -0.533 4.533 8 H 0.035 0.965 9 C -0.010 4.010 10 C -0.092 4.092 11 C 0.077 3.923 12 O -0.356 6.356 13 C 0.542 3.458 14 O -0.552 6.552 15 C -0.308 4.308 16 C 0.101 3.899 17 N -0.317 5.317 18 N -0.349 5.349 19 C 0.155 3.845 20 C -0.187 4.187 21 C -0.178 4.178 22 C -0.156 4.156 23 C 0.153 3.847 24 H 0.267 0.733 25 H 0.026 0.974 26 H 0.025 0.975 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.207 0.793 32 H 0.108 0.892 33 H 0.135 0.865 34 H 0.093 0.907 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.117 0.883 39 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.119 -18.415 1.034 34.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.194 4.194 3 Si 0.774 3.226 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.169 1.169 7 C -0.571 4.571 8 H 0.053 0.947 9 C -0.047 4.047 10 C -0.130 4.130 11 C 0.004 3.996 12 O -0.272 6.272 13 C 0.389 3.611 14 O -0.444 6.444 15 C -0.321 4.321 16 C -0.087 4.087 17 N -0.136 5.136 18 N -0.126 5.126 19 C 0.036 3.964 20 C -0.206 4.206 21 C -0.215 4.215 22 C -0.194 4.194 23 C 0.000 4.000 24 H 0.076 0.924 25 H 0.044 0.956 26 H 0.043 0.957 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.223 0.777 32 H 0.126 0.874 33 H 0.152 0.848 34 H 0.111 0.889 35 H 0.131 0.869 36 H 0.109 0.891 37 H 0.117 0.883 38 H 0.135 0.865 39 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 29.437 -19.411 1.029 35.276 hybrid contribution -0.760 1.750 0.083 1.910 sum 28.677 -17.661 1.113 33.697 Atomic orbital electron populations 1.70065 1.08282 1.28216 1.52479 1.26026 0.95674 1.03591 0.94087 0.85647 0.79535 0.78125 0.79304 1.19055 1.20940 1.16878 1.21412 0.91744 0.93339 1.50606 0.94662 1.19454 0.94250 0.93763 0.97236 1.21317 0.90775 0.98331 1.02569 1.23165 0.95006 0.78912 1.02517 1.86515 1.23673 1.33109 1.83919 1.20353 0.80385 0.88885 0.71470 1.90794 1.60912 1.43356 1.49336 1.19388 0.93837 0.90899 1.27939 1.24479 1.01156 0.88355 0.94679 1.77191 0.87690 1.23042 1.25682 1.48847 1.06803 1.04309 1.52594 1.21840 0.80884 0.94006 0.99673 1.22443 0.96121 1.02770 0.99258 1.23232 1.00990 1.01640 0.95673 1.23085 0.98927 0.94844 1.02511 1.23373 0.97904 0.86079 0.92672 0.92439 0.95589 0.95666 0.91837 0.91877 0.91167 0.91065 0.77658 0.87447 0.84762 0.88873 0.86905 0.89130 0.88296 0.86456 0.76351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.08 13.96 21.45 0.30 -59.78 16 2 C 0.00 0.18 5.47 84.65 0.46 0.64 16 3 Si 0.95 44.47 27.47 68.60 1.88 46.36 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.25 -10.63 6.54 99.48 0.65 -9.97 16 7 C -0.53 -31.04 9.66 25.60 0.25 -30.79 16 8 H 0.04 2.25 7.99 -2.91 -0.02 2.23 16 9 C -0.01 -0.45 4.04 29.85 0.12 -0.33 16 10 C -0.09 -3.67 5.53 30.59 0.17 -3.51 16 11 C 0.08 2.67 5.48 71.98 0.39 3.07 16 12 O -0.36 -11.62 10.07 -56.61 -0.57 -12.19 16 13 C 0.54 16.51 7.95 70.20 0.56 17.07 16 14 O -0.55 -18.92 16.69 19.74 0.33 -18.59 16 15 C -0.31 -7.41 6.13 -20.16 -0.12 -7.53 16 16 C 0.10 2.29 11.87 85.67 1.02 3.30 16 17 N -0.32 -6.89 12.13 -56.25 -0.68 -7.57 16 18 N -0.35 -5.60 3.65 -346.26 -1.26 -6.87 16 19 C 0.15 1.24 6.77 86.38 0.58 1.82 16 20 C -0.19 -1.85 5.92 -10.79 -0.06 -1.91 16 21 C -0.18 -1.31 10.18 30.62 0.31 -1.00 16 22 C -0.16 -0.92 10.25 30.62 0.31 -0.61 16 23 C 0.15 2.64 11.25 84.30 0.95 3.59 16 24 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 25 H 0.03 1.18 7.20 -2.39 -0.02 1.17 16 26 H 0.03 1.13 7.57 -2.38 -0.02 1.11 16 27 H 0.06 2.54 8.14 -2.38 -0.02 2.52 16 28 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.21 4.07 8.06 -2.91 -0.02 4.04 16 32 H 0.11 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.13 0.21 7.79 -2.39 -0.02 0.19 16 34 H 0.09 1.46 7.89 -2.39 -0.02 1.44 16 35 H 0.11 0.48 8.03 -2.39 -0.02 0.47 16 36 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 37 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.22 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -74.38 341.25 5.91 -68.47 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: 0.98 Total: 6.36 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: 4.94 Total: -16.18 kcal Atomic # 7 Polarization: -72.57 SS G_CDS: -1.65 Total: -74.22 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -0.24 Total: -30.78 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.88 Total: 46.36 kcal Total: -74.38 5.91 -68.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870087880.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.850 kcal (2) G-P(sol) polarization free energy of solvation -74.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds