Wall clock time and date at job start Mon Mar 30 2020 23:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42902 * 109.47473 * 2 1 4 4 C 1.35900 * 117.00150 * 179.97438 * 3 2 1 5 5 C 1.38790 * 120.02700 * 0.02721 * 4 3 2 6 6 C 1.38151 * 120.05323 * 179.97438 * 5 4 3 7 7 C 1.38192 * 120.10921 * 359.74422 * 6 5 4 8 8 C 1.38751 * 120.05487 * 0.50805 * 7 6 5 9 9 O 1.35923 * 120.02489 * 179.77208 * 8 7 6 10 10 C 1.34265 * 116.99660 * 248.72234 * 9 8 7 11 11 O 1.20828 * 120.00147 * 5.77674 * 10 9 8 12 12 C 1.50703 * 120.00052 * 185.77682 * 10 9 8 13 13 C 1.53001 * 109.47216 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.46984 * 179.97438 * 13 12 10 15 15 C 1.50706 * 109.46902 * 180.02562 * 14 13 12 16 16 H 1.07996 * 120.00065 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99768 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00260 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47439 * 60.00054 * 19 17 15 21 21 H 1.48506 * 109.46963 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47348 * 299.99688 * 19 17 15 23 23 C 1.38605 * 120.02701 * 180.02562 * 4 3 2 24 24 H 1.09000 * 109.46547 * 300.00005 * 1 2 3 25 25 H 1.09000 * 109.47219 * 59.99758 * 1 2 3 26 26 H 1.08996 * 109.47014 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46997 * 239.99713 * 2 1 3 28 28 H 1.09000 * 109.47219 * 120.00242 * 2 1 3 29 29 H 1.08003 * 119.97326 * 359.97438 * 5 4 3 30 30 H 1.08001 * 119.94430 * 179.97438 * 6 5 4 31 31 H 1.08003 * 119.97179 * 180.28141 * 7 6 5 32 32 H 1.08995 * 109.47344 * 299.99856 * 12 10 9 33 33 H 1.08998 * 109.47115 * 59.99878 * 12 10 9 34 34 H 1.08995 * 109.47113 * 300.00324 * 13 12 10 35 35 H 1.08998 * 109.46911 * 60.00081 * 13 12 10 36 36 H 1.09002 * 109.47316 * 299.99797 * 14 13 12 37 37 H 1.08998 * 109.47199 * 60.00296 * 14 13 12 38 38 H 0.96993 * 120.00377 * 180.02562 * 18 17 15 39 39 H 1.08012 * 120.05656 * 0.04905 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3473 0.0000 4 6 3.3537 1.5253 0.0005 5 6 4.1997 0.4250 0.0005 6 6 5.5694 0.6053 0.0005 7 6 6.1006 1.8810 -0.0048 8 6 5.2592 2.9842 0.0006 9 8 5.7824 4.2387 0.0001 10 6 5.6212 4.9667 1.1166 11 8 5.1261 4.4657 2.0983 12 6 6.0580 6.4088 1.1455 13 6 5.7640 7.0032 2.5243 14 6 6.2080 8.4671 2.5538 15 6 5.9189 9.0524 3.9121 16 1 5.4637 8.4416 4.6776 17 6 6.2347 10.3681 4.1772 18 7 6.7886 11.1122 3.2448 19 14 5.8758 11.0938 5.8606 20 1 6.6173 10.3312 6.8968 21 1 6.3069 12.5147 5.8892 22 1 4.4185 11.0126 6.1342 23 6 3.8842 2.8058 0.0011 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.7868 -0.5730 0.0004 30 1 6.2260 -0.2522 0.0009 31 1 7.1717 2.0194 -0.0093 32 1 7.1275 6.4686 0.9442 33 1 5.5134 6.9687 0.3852 34 1 4.6943 6.9434 2.7252 35 1 6.3083 6.4435 3.2848 36 1 7.2777 8.5265 2.3531 37 1 5.6640 9.0272 1.7932 38 1 7.0111 12.0376 3.4314 39 1 3.2275 3.6634 0.0019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870679252.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:03 Heat of formation + Delta-G solvation = -109.348309 kcal Electronic energy + Delta-G solvation = -20404.374298 eV Core-core repulsion = 17084.295595 eV Total energy + Delta-G solvation = -3320.078702 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.30434 -40.03188 -37.86695 -36.43661 -34.34262 -32.35834 -32.16245 -30.59822 -29.70312 -28.13708 -24.90025 -23.96801 -23.01369 -22.30409 -20.83692 -19.89869 -18.77978 -17.27211 -16.87256 -16.61227 -16.41099 -16.35808 -15.95378 -15.43645 -14.44877 -14.34652 -13.95353 -13.72980 -13.47174 -13.42757 -12.96221 -12.48415 -12.36570 -12.25048 -12.00633 -11.92846 -11.53110 -11.38773 -11.13185 -10.90863 -10.81928 -10.72394 -10.60842 -10.32598 -9.75857 -9.43961 -9.14123 -8.99651 -8.45781 -8.34362 -5.99937 -4.02004 0.87951 1.17194 2.33349 2.67187 3.00132 3.35619 3.39291 3.42834 3.58881 4.46502 4.47360 4.54166 4.62076 4.71710 4.84213 4.89103 4.94580 5.07315 5.22127 5.35982 5.36266 5.41126 5.52498 5.57090 5.66537 5.69958 5.95210 6.02498 6.12414 6.15063 6.32757 6.58709 6.67816 6.78585 7.05182 7.12737 7.65507 7.76968 7.98452 7.99738 8.41919 9.04385 9.62111 11.11461 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026054 B = 0.002809 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.422768 B = 9965.569582 C =10652.133265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 O -0.313 6.313 4 C 0.147 3.853 5 C -0.214 4.214 6 C -0.065 4.065 7 C -0.158 4.158 8 C 0.133 3.867 9 O -0.300 6.300 10 C 0.458 3.542 11 O -0.485 6.485 12 C -0.108 4.108 13 C -0.101 4.101 14 C 0.021 3.979 15 C -0.521 4.521 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.896 5.896 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.161 4.161 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.131 0.869 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.261 0.739 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.316 -23.792 -10.542 26.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.227 6.227 4 C 0.101 3.899 5 C -0.232 4.232 6 C -0.084 4.084 7 C -0.177 4.177 8 C 0.091 3.909 9 O -0.216 6.216 10 C 0.302 3.698 11 O -0.369 6.369 12 C -0.146 4.146 13 C -0.138 4.138 14 C -0.015 4.015 15 C -0.559 4.559 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.536 5.536 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.180 4.180 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.097 0.903 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.149 0.851 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.071 0.929 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.566 -23.639 -10.243 26.586 hybrid contribution -0.126 0.174 0.887 0.912 sum -6.691 -23.464 -9.357 26.132 Atomic orbital electron populations 1.21784 0.92588 1.02875 1.03767 1.22816 0.96038 0.81805 1.01441 1.86095 1.18705 1.29483 1.88449 1.18607 0.82519 0.93256 0.95520 1.21269 0.94369 0.98049 1.09538 1.20763 0.94333 0.96543 0.96714 1.21028 1.00352 0.91216 1.05092 1.18219 0.90607 0.83480 0.98564 1.84696 1.71794 1.23898 1.41195 1.24925 0.75421 0.89797 0.79663 1.90691 1.39803 1.71862 1.34534 1.21758 1.04043 0.85158 1.03614 1.21616 1.01659 0.99234 0.91325 1.19123 0.96771 0.88247 0.97409 1.21193 1.40450 0.96138 0.98147 0.92580 1.25013 0.95202 0.97196 0.97019 1.69945 1.42566 1.07901 1.33150 0.86635 0.78778 0.77971 0.84495 1.20217 1.21292 1.20207 1.20500 0.94255 0.96202 1.07031 0.91338 0.91427 0.90307 0.91941 0.91887 0.85121 0.84855 0.84802 0.87691 0.87683 0.92324 0.92304 0.96274 0.96282 0.92918 0.84642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.28 37.16 0.38 -0.54 16 2 C 0.05 0.41 5.46 37.16 0.20 0.61 16 3 O -0.31 -3.70 10.13 -19.43 -0.20 -3.89 16 4 C 0.15 1.84 6.68 -39.24 -0.26 1.58 16 5 C -0.21 -2.18 9.04 -39.41 -0.36 -2.53 16 6 C -0.07 -0.65 10.03 -39.63 -0.40 -1.05 16 7 C -0.16 -1.91 9.98 -39.41 -0.39 -2.30 16 8 C 0.13 1.94 5.27 -39.24 -0.21 1.73 16 9 O -0.30 -4.61 10.04 -23.61 -0.24 -4.85 16 10 C 0.46 7.79 7.73 36.01 0.28 8.07 16 11 O -0.49 -9.66 15.39 -18.75 -0.29 -9.95 16 12 C -0.11 -1.79 5.81 -27.88 -0.16 -1.95 16 13 C -0.10 -2.11 4.44 -26.73 -0.12 -2.23 16 14 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 15 C -0.52 -14.88 9.11 -34.44 -0.31 -15.20 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 19 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 C -0.16 -2.32 9.26 -39.29 -0.36 -2.68 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 28 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 29 H 0.13 0.96 6.29 -52.48 -0.33 0.63 16 30 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 31 H 0.13 1.39 8.06 -52.48 -0.42 0.96 16 32 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 33 H 0.11 1.57 8.14 -51.93 -0.42 1.14 16 34 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 35 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 39 H 0.14 1.98 8.06 -52.48 -0.42 1.56 16 LS Contribution 338.28 15.07 5.10 5.10 Total: -1.00 -32.97 338.28 -7.59 -40.56 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -5.74 Total: -3.19 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -1.95 Total: -14.54 kcal Atomic # 7 Polarization: -26.84 SS G_CDS: 0.74 Total: -26.10 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.72 Total: -18.69 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.97 -7.59 -40.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870679252.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.789 kcal (2) G-P(sol) polarization free energy of solvation -32.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds