Wall clock time and date at job start Mon Mar 30 2020 23:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42902 * 109.47473 * 2 1 4 4 C 1.35900 * 117.00150 * 179.97438 * 3 2 1 5 5 C 1.38790 * 120.02700 * 0.02721 * 4 3 2 6 6 C 1.38151 * 120.05323 * 179.97438 * 5 4 3 7 7 C 1.38192 * 120.10921 * 359.74422 * 6 5 4 8 8 C 1.38751 * 120.05487 * 0.50805 * 7 6 5 9 9 O 1.35923 * 120.02489 * 179.77208 * 8 7 6 10 10 C 1.34265 * 116.99660 * 248.72234 * 9 8 7 11 11 O 1.20828 * 120.00147 * 5.77674 * 10 9 8 12 12 C 1.50703 * 120.00052 * 185.77682 * 10 9 8 13 13 C 1.53001 * 109.47216 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.46984 * 179.97438 * 13 12 10 15 15 C 1.50706 * 109.46902 * 180.02562 * 14 13 12 16 16 H 1.07996 * 120.00065 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99768 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00260 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47439 * 60.00054 * 19 17 15 21 21 H 1.48506 * 109.46963 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47348 * 299.99688 * 19 17 15 23 23 C 1.38605 * 120.02701 * 180.02562 * 4 3 2 24 24 H 1.09000 * 109.46547 * 300.00005 * 1 2 3 25 25 H 1.09000 * 109.47219 * 59.99758 * 1 2 3 26 26 H 1.08996 * 109.47014 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46997 * 239.99713 * 2 1 3 28 28 H 1.09000 * 109.47219 * 120.00242 * 2 1 3 29 29 H 1.08003 * 119.97326 * 359.97438 * 5 4 3 30 30 H 1.08001 * 119.94430 * 179.97438 * 6 5 4 31 31 H 1.08003 * 119.97179 * 180.28141 * 7 6 5 32 32 H 1.08995 * 109.47344 * 299.99856 * 12 10 9 33 33 H 1.08998 * 109.47115 * 59.99878 * 12 10 9 34 34 H 1.08995 * 109.47113 * 300.00324 * 13 12 10 35 35 H 1.08998 * 109.46911 * 60.00081 * 13 12 10 36 36 H 1.09002 * 109.47316 * 299.99797 * 14 13 12 37 37 H 1.08998 * 109.47199 * 60.00296 * 14 13 12 38 38 H 0.96993 * 120.00377 * 180.02562 * 18 17 15 39 39 H 1.08012 * 120.05656 * 0.04905 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3473 0.0000 4 6 3.3537 1.5253 0.0005 5 6 4.1997 0.4250 0.0005 6 6 5.5694 0.6053 0.0005 7 6 6.1006 1.8810 -0.0048 8 6 5.2592 2.9842 0.0006 9 8 5.7824 4.2387 0.0001 10 6 5.6212 4.9667 1.1166 11 8 5.1261 4.4657 2.0983 12 6 6.0580 6.4088 1.1455 13 6 5.7640 7.0032 2.5243 14 6 6.2080 8.4671 2.5538 15 6 5.9189 9.0524 3.9121 16 1 5.4637 8.4416 4.6776 17 6 6.2347 10.3681 4.1772 18 7 6.7886 11.1122 3.2448 19 14 5.8758 11.0938 5.8606 20 1 6.6173 10.3312 6.8968 21 1 6.3069 12.5147 5.8892 22 1 4.4185 11.0126 6.1342 23 6 3.8842 2.8058 0.0011 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.7868 -0.5730 0.0004 30 1 6.2260 -0.2522 0.0009 31 1 7.1717 2.0194 -0.0093 32 1 7.1275 6.4686 0.9442 33 1 5.5134 6.9687 0.3852 34 1 4.6943 6.9434 2.7252 35 1 6.3083 6.4435 3.2848 36 1 7.2777 8.5265 2.3531 37 1 5.6640 9.0272 1.7932 38 1 7.0111 12.0376 3.4314 39 1 3.2275 3.6634 0.0019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870679252.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:03 Heat of formation + Delta-G solvation = -127.295778 kcal Electronic energy + Delta-G solvation = -20405.152558 eV Core-core repulsion = 17084.295595 eV Total energy + Delta-G solvation = -3320.856963 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.48475 -40.95133 -38.98036 -37.52029 -36.21449 -34.13732 -32.99418 -31.57732 -30.61845 -29.85593 -26.48342 -25.00676 -24.01839 -23.45544 -22.13097 -21.40761 -19.80335 -18.74105 -18.24981 -17.96678 -17.42931 -17.21687 -17.08784 -16.63922 -16.46568 -15.54353 -15.07425 -14.75874 -14.62647 -14.38801 -14.19110 -13.88985 -13.45525 -13.35592 -13.18119 -13.07593 -12.84435 -12.65936 -12.57149 -12.47993 -12.29542 -11.99651 -11.74021 -11.66267 -11.60860 -11.42242 -11.20928 -10.54151 -9.98179 -9.34349 -8.20302 -6.30366 -0.09287 0.27363 1.00810 1.40266 1.42894 1.50773 1.59793 2.17382 2.41751 2.64054 3.13055 3.61859 3.69919 3.93504 4.00111 4.03925 4.08959 4.12765 4.14950 4.26077 4.34584 4.40206 4.51961 4.75449 4.83518 4.86700 4.91414 5.00539 5.05691 5.11148 5.17435 5.20825 5.27416 5.34967 5.51737 5.65588 5.71753 5.85222 6.25444 6.32950 6.69636 6.84743 7.38205 8.91056 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026054 B = 0.002809 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.422768 B = 9965.569582 C =10652.133265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.043 3.957 3 O -0.336 6.336 4 C 0.136 3.864 5 C -0.203 4.203 6 C -0.056 4.056 7 C -0.165 4.165 8 C 0.099 3.901 9 O -0.294 6.294 10 C 0.467 3.533 11 O -0.520 6.520 12 C -0.101 4.101 13 C -0.087 4.087 14 C 0.026 3.974 15 C -0.549 4.549 16 H 0.053 0.947 17 C 0.004 3.996 18 N -0.928 5.928 19 Si 0.961 3.039 20 H -0.269 1.269 21 H -0.279 1.279 22 H -0.270 1.270 23 C -0.189 4.189 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.105 0.895 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.166 0.834 30 H 0.175 0.825 31 H 0.149 0.851 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.047 0.953 35 H 0.050 0.950 36 H 0.006 0.994 37 H 0.004 0.996 38 H 0.265 0.735 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.180 -26.122 -10.548 28.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.031 4.031 3 O -0.251 6.251 4 C 0.090 3.910 5 C -0.222 4.222 6 C -0.073 4.073 7 C -0.183 4.183 8 C 0.057 3.943 9 O -0.209 6.209 10 C 0.312 3.688 11 O -0.406 6.406 12 C -0.138 4.138 13 C -0.125 4.125 14 C -0.011 4.011 15 C -0.587 4.587 16 H 0.071 0.929 17 C -0.195 4.195 18 N -0.568 5.568 19 Si 0.786 3.214 20 H -0.194 1.194 21 H -0.205 1.205 22 H -0.195 1.195 23 C -0.208 4.208 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.124 0.876 27 H 0.100 0.900 28 H 0.093 0.907 29 H 0.183 0.817 30 H 0.193 0.807 31 H 0.167 0.833 32 H 0.145 0.855 33 H 0.142 0.858 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.025 0.975 37 H 0.023 0.977 38 H 0.074 0.926 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.433 -25.986 -10.273 28.674 hybrid contribution -0.217 0.777 0.825 1.154 sum -6.650 -25.209 -9.447 27.730 Atomic orbital electron populations 1.21833 0.91720 1.04372 1.02965 1.23178 0.96831 0.80193 1.02911 1.86081 1.18424 1.32227 1.88373 1.18764 0.83360 0.93269 0.95606 1.21697 0.94342 0.98787 1.07354 1.21268 0.94805 0.96833 0.94431 1.21350 1.00970 0.91358 1.04667 1.18573 0.91184 0.83472 1.01027 1.84655 1.71451 1.24760 1.40059 1.24796 0.74503 0.89862 0.79620 1.90672 1.41469 1.72640 1.35856 1.21584 1.05748 0.85181 1.01256 1.21300 1.00552 0.96633 0.93966 1.19007 0.95687 0.90702 0.95733 1.21638 1.40708 0.96830 0.99482 0.92850 1.25896 0.94845 0.97612 1.01100 1.70054 1.43290 1.08308 1.35193 0.85559 0.78888 0.77348 0.79615 1.19382 1.20456 1.19477 1.20535 0.94344 0.96888 1.09066 0.92464 0.91935 0.87605 0.89976 0.90688 0.81671 0.80743 0.83283 0.85476 0.85834 0.93442 0.93152 0.97549 0.97738 0.92626 0.86541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 10.28 71.98 0.74 -0.87 16 2 C 0.04 0.57 5.46 71.98 0.39 0.96 16 3 O -0.34 -7.81 10.13 -92.42 -0.94 -8.75 16 4 C 0.14 3.34 6.68 22.49 0.15 3.49 16 5 C -0.20 -3.57 9.04 22.38 0.20 -3.37 16 6 C -0.06 -0.92 10.03 22.24 0.22 -0.70 16 7 C -0.17 -3.71 9.98 22.38 0.22 -3.49 16 8 C 0.10 2.88 5.27 22.49 0.12 3.00 16 9 O -0.29 -9.11 10.04 4.55 0.05 -9.07 16 10 C 0.47 16.09 7.73 71.24 0.55 16.64 16 11 O -0.52 -21.25 15.39 21.95 0.34 -20.92 16 12 C -0.10 -3.32 5.81 29.85 0.17 -3.15 16 13 C -0.09 -3.71 4.44 30.59 0.14 -3.58 16 14 C 0.03 1.34 4.97 29.85 0.15 1.49 16 15 C -0.55 -31.86 9.11 25.60 0.23 -31.63 16 16 H 0.05 3.05 7.74 -2.91 -0.02 3.02 16 17 C 0.00 0.21 5.46 84.65 0.46 0.68 16 18 N -0.93 -56.12 13.29 21.45 0.28 -55.84 16 19 Si 0.96 44.94 29.54 68.60 2.03 46.97 16 20 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 22 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 23 C -0.19 -5.64 9.26 22.46 0.21 -5.43 16 24 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.08 0.75 7.66 -2.39 -0.02 0.74 16 28 H 0.07 0.80 7.66 -2.39 -0.02 0.78 16 29 H 0.17 1.68 6.29 -2.91 -0.02 1.66 16 30 H 0.18 1.44 8.06 -2.91 -0.02 1.41 16 31 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 32 H 0.13 3.66 8.14 -2.39 -0.02 3.64 16 33 H 0.12 3.64 8.14 -2.39 -0.02 3.62 16 34 H 0.05 2.10 8.10 -2.39 -0.02 2.09 16 35 H 0.05 2.21 8.10 -2.39 -0.02 2.19 16 36 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 38 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 39 H 0.12 3.72 8.06 -2.90 -0.02 3.70 16 Total: -1.00 -72.83 338.28 6.75 -66.08 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: 1.03 Total: 7.47 kcal Atomic # 6 Polarization: -29.91 SS G_CDS: 3.96 Total: -25.95 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: 0.28 Total: -55.84 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -0.55 Total: -38.73 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -72.83 6.75 -66.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870679252.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.212 kcal (2) G-P(sol) polarization free energy of solvation -72.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds