Wall clock time and date at job start Mon Mar 30 2020 23:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.47177 * 119.99481 * 2 1 3 13 13 O 1.20822 * 119.99840 * 120.00361 * 12 2 1 14 14 O 1.34228 * 120.00316 * 300.00594 * 12 2 1 15 15 C 1.45202 * 117.00107 * 180.02562 * 14 12 2 16 16 C 1.52999 * 109.46910 * 180.02562 * 15 14 12 17 17 C 1.53004 * 109.46990 * 180.02562 * 16 15 14 18 18 H 1.08997 * 109.47313 * 54.99668 * 17 16 15 19 19 O 1.42901 * 109.46872 * 294.99525 * 17 16 15 20 20 C 1.50701 * 109.46902 * 175.00149 * 17 16 15 21 21 C 1.38227 * 120.00533 * 84.72760 * 20 17 16 22 22 C 1.38239 * 120.00102 * 179.79044 * 21 20 17 23 23 C 1.38229 * 119.99841 * 0.42840 * 22 21 20 24 24 C 1.38236 * 120.00074 * 359.82091 * 23 22 21 25 25 C 1.38236 * 120.00032 * 359.97438 * 24 23 22 26 26 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 27 27 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.46935 * 299.99478 * 15 14 12 31 31 H 1.08998 * 109.46968 * 59.99840 * 15 14 12 32 32 H 1.09006 * 109.47239 * 299.99741 * 16 15 14 33 33 H 1.08995 * 109.47984 * 59.99571 * 16 15 14 34 34 H 0.96702 * 114.00078 * 300.00481 * 19 17 16 35 35 H 1.08006 * 120.00187 * 359.97438 * 21 20 17 36 36 H 1.07997 * 119.99835 * 180.27205 * 22 21 20 37 37 H 1.08002 * 120.00026 * 179.84012 * 23 22 21 38 38 H 1.08005 * 119.99709 * 179.97438 * 24 23 22 39 39 H 1.08002 * 119.99728 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 6 2.0323 -0.7103 1.2305 13 8 2.7270 -1.6926 1.1197 14 8 1.7080 -0.2517 2.4496 15 6 2.2277 -0.9855 3.5897 16 6 1.7554 -0.3190 4.8834 17 6 2.3036 -1.0919 6.0848 18 1 3.3881 -1.1662 6.0049 19 8 1.7365 -2.4034 6.1064 20 6 1.9418 -0.3673 7.3557 21 6 0.7089 -0.5775 7.9443 22 6 0.3789 0.0840 9.1124 23 6 1.2783 0.9623 9.6871 24 6 2.5093 1.1765 9.0956 25 6 2.8410 0.5118 7.9298 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 0.7088 1.1611 -3.4845 30 1 1.8643 -2.0126 3.5570 31 1 3.3172 -0.9843 3.5566 32 1 2.1184 0.7083 4.9164 33 1 0.6660 -0.3205 4.9163 34 1 0.7720 -2.4138 6.1762 35 1 0.0046 -1.2608 7.4932 36 1 -0.5827 -0.0836 9.5746 37 1 1.0195 1.4811 10.5983 38 1 3.2119 1.8631 9.5444 39 1 3.8026 0.6795 7.4675 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873404468.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:35 Heat of formation + Delta-G solvation = -128.762180 kcal Electronic energy + Delta-G solvation = -20736.746085 eV Core-core repulsion = 17415.825534 eV Total energy + Delta-G solvation = -3320.920551 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.02275 -39.44443 -37.37959 -35.70981 -33.86461 -32.62946 -31.15444 -30.99960 -30.32494 -25.97886 -25.19013 -23.30326 -22.88883 -21.98819 -21.19779 -19.72690 -17.89179 -16.74602 -16.34743 -16.24797 -15.97297 -15.70282 -15.32472 -15.18182 -14.39455 -14.28351 -14.01336 -13.65902 -13.33979 -13.14361 -12.70960 -12.51792 -12.08483 -11.88714 -11.57327 -11.42171 -11.28338 -11.04626 -10.97359 -10.79636 -10.68435 -10.40919 -10.32190 -10.04291 -9.93313 -9.22046 -9.15025 -9.04257 -8.96770 -8.43417 -6.09502 -4.14861 1.01515 1.10100 3.31770 3.33304 3.35852 3.36156 3.42402 3.59001 4.19847 4.34624 4.44461 4.53927 4.68721 4.80764 4.89203 4.93145 5.15577 5.17901 5.23715 5.33286 5.45909 5.59212 5.65867 5.72090 5.92374 5.96449 6.14659 6.21130 6.26483 6.29009 6.67326 6.67982 6.88113 6.89456 7.26180 7.35882 7.45226 7.75299 7.95785 8.15755 8.87716 8.95596 9.50567 10.97923 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.041319 B = 0.002856 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.485649 B = 9801.948557 C = 9985.232729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.057 3.943 3 H 0.063 0.937 4 C -0.513 4.513 5 H 0.075 0.925 6 C 0.061 3.939 7 N -0.893 5.893 8 Si 0.906 3.094 9 H -0.287 1.287 10 H -0.275 1.275 11 H -0.275 1.275 12 C 0.464 3.536 13 O -0.517 6.517 14 O -0.369 6.369 15 C 0.066 3.934 16 C -0.144 4.144 17 C 0.150 3.850 18 H 0.111 0.889 19 O -0.552 6.552 20 C -0.111 4.111 21 C -0.111 4.111 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.118 4.118 25 C -0.110 4.110 26 H 0.096 0.904 27 H 0.031 0.969 28 H 0.023 0.977 29 H 0.264 0.736 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.375 0.625 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.086 1.200 22.781 22.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.039 3.961 3 H 0.081 0.919 4 C -0.551 4.551 5 H 0.093 0.907 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.733 3.267 9 H -0.212 1.212 10 H -0.201 1.201 11 H -0.201 1.201 12 C 0.309 3.691 13 O -0.404 6.404 14 O -0.287 6.287 15 C -0.009 4.009 16 C -0.182 4.182 17 C 0.091 3.909 18 H 0.129 0.871 19 O -0.358 6.358 20 C -0.112 4.112 21 C -0.129 4.129 22 C -0.135 4.135 23 C -0.140 4.140 24 C -0.136 4.136 25 C -0.128 4.128 26 H 0.114 0.886 27 H 0.050 0.950 28 H 0.042 0.958 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.223 0.777 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.325 0.831 22.578 22.595 hybrid contribution -0.190 -0.250 -0.636 0.710 sum -0.515 0.580 21.941 21.955 Atomic orbital electron populations 1.21730 0.95662 1.00017 1.01684 1.18746 0.94835 0.96939 0.85624 0.91889 1.21106 1.31916 1.13245 0.88824 0.90699 1.24940 0.94906 0.95025 0.99126 1.69873 1.36511 1.22835 1.23940 0.86427 0.79295 0.79677 0.81298 1.21218 1.20081 1.20079 1.25321 0.76598 0.83219 0.83957 1.90498 1.36357 1.26742 1.86811 1.86588 1.70533 1.56036 1.15558 1.22721 0.98661 0.95859 0.83628 1.22234 1.02513 1.00868 0.92587 1.20772 0.98974 0.81726 0.89436 0.87107 1.86651 1.25795 1.26911 1.96464 1.20536 0.94930 0.98223 0.97478 1.20897 0.95994 0.99851 0.96189 1.21129 0.99617 0.96904 0.95879 1.21187 0.94208 0.98560 1.00089 1.21164 0.96912 0.99659 0.95876 1.21031 0.99429 0.96431 0.95889 0.88571 0.95010 0.95827 0.92650 0.91194 0.91944 0.89722 0.90335 0.77714 0.86075 0.85929 0.86079 0.85901 0.85716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 8.90 37.16 0.33 -2.86 16 2 C 0.06 1.48 2.74 -92.93 -0.25 1.23 16 3 H 0.06 1.67 8.14 -51.92 -0.42 1.25 16 4 C -0.51 -14.59 8.37 -34.44 -0.29 -14.88 16 5 H 0.07 2.22 6.76 -52.49 -0.35 1.86 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.02 11.32 55.43 0.63 -24.40 16 8 Si 0.91 21.66 29.54 -169.99 -5.02 16.64 16 9 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.46 11.17 7.25 36.00 0.26 11.43 16 13 O -0.52 -13.54 15.21 -18.75 -0.29 -13.83 16 14 O -0.37 -7.45 10.12 -39.25 -0.40 -7.85 16 15 C 0.07 1.06 5.36 37.16 0.20 1.26 16 16 C -0.14 -1.71 5.26 -26.73 -0.14 -1.85 16 17 C 0.15 1.55 3.21 -27.88 -0.09 1.46 16 18 H 0.11 1.12 8.05 -51.93 -0.42 0.70 16 19 O -0.55 -6.07 12.67 -35.23 -0.45 -6.52 16 20 C -0.11 -1.07 5.00 -104.63 -0.52 -1.59 16 21 C -0.11 -0.97 9.33 -39.59 -0.37 -1.34 16 22 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 23 C -0.12 -0.96 10.05 -39.59 -0.40 -1.36 16 24 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 25 C -0.11 -0.99 9.68 -39.58 -0.38 -1.37 16 26 H 0.10 2.47 6.07 -51.93 -0.32 2.15 16 27 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.02 0.49 8.11 -51.93 -0.42 0.07 16 29 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.07 1.17 7.81 -51.93 -0.41 0.76 16 31 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.37 2.89 7.40 45.56 0.34 3.23 16 35 H 0.12 0.83 6.62 -52.48 -0.35 0.48 16 36 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 37 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 39 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 332.80 15.07 5.02 5.02 Total: -1.00 -32.04 332.80 -7.92 -39.96 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -4.87 Total: 1.94 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -2.55 Total: -10.96 kcal Atomic # 7 Polarization: -25.02 SS G_CDS: 0.63 Total: -24.40 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -1.13 Total: -28.20 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.04 -7.92 -39.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873404468.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.805 kcal (2) G-P(sol) polarization free energy of solvation -32.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds