Wall clock time and date at job start Mon Mar 30 2020 23:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.47177 * 119.99481 * 2 1 3 13 13 O 1.20822 * 119.99840 * 120.00361 * 12 2 1 14 14 O 1.34228 * 120.00316 * 300.00594 * 12 2 1 15 15 C 1.45202 * 117.00107 * 180.02562 * 14 12 2 16 16 C 1.52999 * 109.46910 * 180.02562 * 15 14 12 17 17 C 1.53004 * 109.46990 * 180.02562 * 16 15 14 18 18 H 1.08997 * 109.47313 * 54.99668 * 17 16 15 19 19 O 1.42901 * 109.46872 * 294.99525 * 17 16 15 20 20 C 1.50701 * 109.46902 * 175.00149 * 17 16 15 21 21 C 1.38227 * 120.00533 * 84.72760 * 20 17 16 22 22 C 1.38239 * 120.00102 * 179.79044 * 21 20 17 23 23 C 1.38229 * 119.99841 * 0.42840 * 22 21 20 24 24 C 1.38236 * 120.00074 * 359.82091 * 23 22 21 25 25 C 1.38236 * 120.00032 * 359.97438 * 24 23 22 26 26 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 27 27 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.46935 * 299.99478 * 15 14 12 31 31 H 1.08998 * 109.46968 * 59.99840 * 15 14 12 32 32 H 1.09006 * 109.47239 * 299.99741 * 16 15 14 33 33 H 1.08995 * 109.47984 * 59.99571 * 16 15 14 34 34 H 0.96702 * 114.00078 * 300.00481 * 19 17 16 35 35 H 1.08006 * 120.00187 * 359.97438 * 21 20 17 36 36 H 1.07997 * 119.99835 * 180.27205 * 22 21 20 37 37 H 1.08002 * 120.00026 * 179.84012 * 23 22 21 38 38 H 1.08005 * 119.99709 * 179.97438 * 24 23 22 39 39 H 1.08002 * 119.99728 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 6 2.0323 -0.7103 1.2305 13 8 2.7270 -1.6926 1.1197 14 8 1.7080 -0.2517 2.4496 15 6 2.2277 -0.9855 3.5897 16 6 1.7554 -0.3190 4.8834 17 6 2.3036 -1.0919 6.0848 18 1 3.3881 -1.1662 6.0049 19 8 1.7365 -2.4034 6.1064 20 6 1.9418 -0.3673 7.3557 21 6 0.7089 -0.5775 7.9443 22 6 0.3789 0.0840 9.1124 23 6 1.2783 0.9623 9.6871 24 6 2.5093 1.1765 9.0956 25 6 2.8410 0.5118 7.9298 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 0.7088 1.1611 -3.4845 30 1 1.8643 -2.0126 3.5570 31 1 3.3172 -0.9843 3.5566 32 1 2.1184 0.7083 4.9164 33 1 0.6660 -0.3205 4.9163 34 1 0.7720 -2.4138 6.1762 35 1 0.0046 -1.2608 7.4932 36 1 -0.5827 -0.0836 9.5746 37 1 1.0195 1.4811 10.5983 38 1 3.2119 1.8631 9.5444 39 1 3.8026 0.6795 7.4675 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873404468.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:34 Heat of formation + Delta-G solvation = -147.529431 kcal Electronic energy + Delta-G solvation = -20737.559894 eV Core-core repulsion = 17415.825534 eV Total energy + Delta-G solvation = -3321.734360 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.37670 -40.58139 -38.26979 -37.35899 -35.93002 -33.60518 -32.66296 -31.74949 -31.55659 -27.31383 -27.01287 -24.92855 -23.55314 -23.13974 -22.02255 -21.51277 -18.70842 -18.54204 -18.05501 -17.62352 -17.38622 -16.83695 -16.62452 -16.14226 -15.91957 -15.38096 -14.92142 -14.72084 -14.53846 -14.31751 -14.13610 -13.78021 -13.51935 -13.03012 -12.94991 -12.84459 -12.67473 -12.61755 -12.55743 -12.28939 -12.06309 -12.04164 -11.84225 -11.49789 -11.28426 -11.12781 -10.94932 -10.53707 -9.82774 -9.67847 -8.20779 -6.34231 0.37667 0.49420 1.41754 1.42699 1.45151 1.52098 1.87900 2.43423 2.84156 3.09165 3.43114 3.52669 3.82982 3.91477 4.01218 4.11271 4.16576 4.26648 4.30879 4.38792 4.50377 4.63201 4.67834 4.68733 4.89384 4.91652 4.96751 5.02173 5.05828 5.15427 5.38746 5.49725 5.55218 5.61976 5.63185 5.68689 5.88020 6.09370 6.09893 6.68699 6.71911 7.04217 7.34582 8.85545 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.041319 B = 0.002856 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.485649 B = 9801.948557 C = 9985.232729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.050 3.950 3 H 0.051 0.949 4 C -0.542 4.542 5 H 0.055 0.945 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.964 3.036 9 H -0.273 1.273 10 H -0.274 1.274 11 H -0.274 1.274 12 C 0.472 3.528 13 O -0.545 6.545 14 O -0.363 6.363 15 C 0.061 3.939 16 C -0.131 4.131 17 C 0.159 3.841 18 H 0.110 0.890 19 O -0.568 6.568 20 C -0.126 4.126 21 C -0.122 4.122 22 C -0.126 4.126 23 C -0.127 4.127 24 C -0.127 4.127 25 C -0.124 4.124 26 H 0.078 0.922 27 H 0.028 0.972 28 H 0.049 0.951 29 H 0.269 0.731 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.388 0.612 35 H 0.136 0.864 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.592 1.499 23.917 24.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.031 3.969 3 H 0.069 0.931 4 C -0.579 4.579 5 H 0.073 0.927 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.789 3.211 9 H -0.197 1.197 10 H -0.199 1.199 11 H -0.199 1.199 12 C 0.317 3.683 13 O -0.434 6.434 14 O -0.281 6.281 15 C -0.013 4.013 16 C -0.169 4.169 17 C 0.100 3.900 18 H 0.127 0.873 19 O -0.376 6.376 20 C -0.126 4.126 21 C -0.140 4.140 22 C -0.144 4.144 23 C -0.145 4.145 24 C -0.145 4.145 25 C -0.142 4.142 26 H 0.097 0.903 27 H 0.047 0.953 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.238 0.762 35 H 0.153 0.847 36 H 0.160 0.840 37 H 0.160 0.840 38 H 0.159 0.841 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.854 1.149 23.740 23.783 hybrid contribution -0.047 -0.313 -0.866 0.922 sum -0.902 0.836 22.874 22.907 Atomic orbital electron populations 1.21563 0.94282 0.99904 1.02076 1.18681 0.95993 0.96121 0.86134 0.93101 1.21233 1.32763 1.13345 0.90593 0.92671 1.25643 0.94857 0.95654 1.01553 1.69950 1.36546 1.23357 1.24855 0.85523 0.78717 0.78675 0.78225 1.19750 1.19944 1.19901 1.24863 0.76005 0.82514 0.84897 1.90478 1.37573 1.27894 1.87484 1.86536 1.70137 1.56078 1.15306 1.23076 0.98739 0.95857 0.83619 1.22200 1.03057 1.00915 0.90706 1.20639 0.98807 0.81371 0.89191 0.87259 1.86621 1.27179 1.27321 1.96466 1.20486 0.95744 0.98959 0.97415 1.21165 0.96014 1.00231 0.96614 1.21445 1.00575 0.96668 0.95708 1.21538 0.93978 0.98314 1.00702 1.21455 0.97575 0.99820 0.95655 1.21260 0.99870 0.96588 0.96477 0.90314 0.95266 0.93161 0.92189 0.91758 0.92066 0.89173 0.89450 0.76197 0.84659 0.84027 0.84011 0.84134 0.84941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 8.90 71.98 0.64 -5.09 16 2 C 0.05 2.60 2.74 -12.29 -0.03 2.56 16 3 H 0.05 2.75 8.14 -2.38 -0.02 2.74 16 4 C -0.54 -31.27 8.37 25.60 0.21 -31.06 16 5 H 0.06 3.35 6.76 -2.91 -0.02 3.33 16 6 C 0.02 1.27 5.30 84.66 0.45 1.72 16 7 N -0.91 -50.75 11.32 21.45 0.24 -50.51 16 8 Si 0.96 44.21 29.54 68.60 2.03 46.23 16 9 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 10 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 11 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 12 C 0.47 22.86 7.25 71.24 0.52 23.38 16 13 O -0.54 -28.99 15.21 21.98 0.33 -28.65 16 14 O -0.36 -14.49 10.12 -51.39 -0.52 -15.01 16 15 C 0.06 1.92 5.36 71.98 0.39 2.31 16 16 C -0.13 -2.93 5.26 30.60 0.16 -2.77 16 17 C 0.16 3.12 3.21 29.85 0.10 3.21 16 18 H 0.11 2.13 8.05 -2.39 -0.02 2.12 16 19 O -0.57 -11.86 12.67 -148.98 -1.89 -13.75 16 20 C -0.13 -2.25 5.00 -19.87 -0.10 -2.34 16 21 C -0.12 -1.92 9.33 22.27 0.21 -1.72 16 22 C -0.13 -1.76 10.05 22.27 0.22 -1.54 16 23 C -0.13 -1.71 10.05 22.27 0.22 -1.49 16 24 C -0.13 -1.84 10.05 22.27 0.22 -1.61 16 25 C -0.12 -2.07 9.68 22.27 0.22 -1.85 16 26 H 0.08 4.04 6.07 -2.39 -0.01 4.02 16 27 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.05 2.06 8.11 -2.39 -0.02 2.04 16 29 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 30 H 0.06 2.12 7.81 -2.39 -0.02 2.10 16 31 H 0.06 1.95 8.13 -2.39 -0.02 1.93 16 32 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 33 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.39 5.45 7.40 -74.06 -0.55 4.90 16 35 H 0.14 1.60 6.62 -2.91 -0.02 1.58 16 36 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 37 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16 38 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 39 H 0.13 1.87 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -67.75 332.80 4.12 -63.63 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.50 Total: 14.36 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: 3.42 Total: -16.30 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: 0.24 Total: -50.51 kcal Atomic # 8 Polarization: -55.33 SS G_CDS: -2.07 Total: -57.41 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -67.75 4.12 -63.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873404468.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.899 kcal (2) G-P(sol) polarization free energy of solvation -67.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds