Wall clock time and date at job start Tue Mar 31 2020 00:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48495 * 109.47002 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47093 * 299.99921 * 3 2 1 6 6 H 1.48490 * 109.47068 * 60.00183 * 3 2 1 7 7 C 1.37871 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00152 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 359.97438 * 7 2 1 10 10 C 1.53011 * 109.46921 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46712 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47000 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47208 * 179.97438 * 12 11 10 14 14 O 1.21283 * 119.99803 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99675 * 180.27843 * 13 12 11 16 16 C 1.46497 * 119.99525 * 179.72583 * 15 13 12 17 17 C 1.50706 * 109.47174 * 179.97438 * 16 15 13 18 18 C 1.38251 * 120.39147 * 269.72651 * 17 16 15 19 19 N 1.31850 * 120.88327 * 179.74952 * 18 17 16 20 20 C 1.31837 * 121.78182 * 0.53548 * 19 18 17 21 21 C 1.38704 * 120.68418 * 359.72773 * 20 19 18 22 22 O 1.35910 * 120.47544 * 179.97438 * 21 20 19 23 23 C 1.38533 * 120.38455 * 89.99760 * 17 16 15 24 24 H 0.96999 * 120.00235 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47174 * 60.00647 * 9 7 2 26 26 H 1.08992 * 109.46936 * 299.99779 * 9 7 2 27 27 H 1.08995 * 109.46784 * 60.00085 * 10 9 7 28 28 H 1.09001 * 109.46592 * 299.99709 * 10 9 7 29 29 H 1.09000 * 109.47849 * 59.99915 * 11 10 9 30 30 H 1.08998 * 109.47443 * 299.99783 * 11 10 9 31 31 H 1.09009 * 109.46730 * 59.99606 * 12 11 10 32 32 H 1.08998 * 109.46846 * 300.00150 * 12 11 10 33 33 H 0.97000 * 119.99894 * 359.71837 * 15 13 12 34 34 H 1.08995 * 109.47421 * 299.99467 * 16 15 13 35 35 H 1.09001 * 109.47621 * 60.00103 * 16 15 13 36 36 H 1.08001 * 119.55540 * 0.02562 * 18 17 16 37 37 H 1.07999 * 119.65505 * 179.75421 * 20 19 18 38 38 H 0.96705 * 113.99701 * 270.02448 * 22 21 20 39 39 H 1.07995 * 120.81888 * 359.95906 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0018 11 6 1.4805 -4.9870 -0.0025 12 6 2.4748 -6.1500 -0.0044 13 6 1.7213 -7.4551 -0.0044 14 8 0.5085 -7.4551 -0.0025 15 7 2.3953 -8.6222 -0.0003 16 6 1.6629 -9.8909 0.0058 17 6 2.6422 -11.0364 0.0088 18 6 3.0906 -11.5764 -1.1823 19 7 3.9511 -12.5754 -1.1910 20 6 4.4102 -13.1061 -0.0749 21 6 4.0026 -12.6217 1.1593 22 8 4.4782 -13.1724 2.3072 23 6 3.0993 -11.5643 1.2053 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6249 -2.5571 0.8896 27 1 2.8727 -3.6046 0.8877 28 1 2.8714 -3.6038 -0.8923 29 1 0.8534 -5.0442 -0.8922 30 1 0.8542 -5.0455 0.8877 31 1 3.1022 -6.0930 0.8852 32 1 3.1007 -6.0913 -0.8948 33 1 3.3653 -8.6221 -0.0015 34 1 1.0373 -9.9451 0.8967 35 1 1.0352 -9.9525 -0.8833 36 1 2.7347 -11.1716 -2.1181 37 1 5.1112 -13.9263 -0.1221 38 1 3.9441 -13.9056 2.6424 39 1 2.7632 -11.1647 2.1506 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886275361.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:41 Heat of formation + Delta-G solvation = -70.856996 kcal Electronic energy + Delta-G solvation = -19830.108871 eV Core-core repulsion = 16543.992029 eV Total energy + Delta-G solvation = -3286.116843 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.07641 -39.64981 -37.86453 -35.62249 -34.80954 -32.81320 -32.48905 -30.89698 -29.75705 -27.16415 -25.30379 -24.10687 -22.82664 -22.04665 -20.38226 -19.96878 -18.78246 -17.53342 -17.46956 -16.90645 -16.37880 -16.06654 -15.74012 -15.51528 -14.44217 -14.33375 -14.09241 -13.90739 -13.77289 -13.49588 -13.14003 -12.85751 -12.59399 -12.13569 -11.80591 -11.69300 -11.58726 -10.98947 -10.53590 -10.48280 -10.43854 -10.40250 -10.01124 -9.83453 -9.60868 -9.41967 -9.28659 -9.19523 -8.95838 -8.29980 -5.94540 -3.96931 0.35861 0.59088 2.67224 2.90335 3.25456 3.33751 3.40927 3.44955 3.50740 3.93767 4.14895 4.28037 4.39739 4.49705 4.62345 4.81773 4.99292 5.19247 5.30203 5.37038 5.37335 5.41016 5.48268 5.63907 5.85600 5.93701 6.14375 6.17501 6.30996 6.55290 6.84732 6.92509 7.02560 7.20693 7.32944 7.38256 7.75330 7.91056 8.06992 8.19278 8.48897 9.11035 9.66748 11.16806 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.041443 B = 0.002168 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.462638 B =12913.394623 C =13082.205510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.138 4.138 13 C 0.513 3.487 14 O -0.533 6.533 15 N -0.737 5.737 16 C 0.164 3.836 17 C -0.139 4.139 18 C 0.109 3.891 19 N -0.466 5.466 20 C 0.082 3.918 21 C 0.055 3.945 22 O -0.491 6.491 23 C -0.084 4.084 24 H 0.259 0.741 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.401 0.599 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.163 0.837 37 H 0.162 0.838 38 H 0.394 0.606 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.118 -29.276 1.732 30.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.147 4.147 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.141 4.141 12 C -0.178 4.178 13 C 0.301 3.699 14 O -0.409 6.409 15 N -0.391 5.391 16 C 0.040 3.960 17 C -0.142 4.142 18 C -0.049 4.049 19 N -0.175 5.175 20 C -0.076 4.076 21 C 0.008 3.992 22 O -0.300 6.300 23 C -0.111 4.111 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.235 0.765 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.180 0.820 37 H 0.179 0.821 38 H 0.251 0.749 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 7.792 -29.070 0.899 30.109 hybrid contribution 0.314 0.823 0.977 1.316 sum 8.106 -28.247 1.876 29.447 Atomic orbital electron populations 1.69985 1.06038 1.26385 1.51067 1.25049 0.94852 0.99254 0.95501 0.86553 0.80077 0.83926 0.77534 1.19788 1.21061 1.21063 1.21321 0.93018 0.91189 1.50205 0.92707 1.19107 0.94075 0.91297 0.97325 1.21652 0.99081 0.93993 1.00088 1.21457 0.97006 0.92691 1.02980 1.21806 1.00122 0.91819 1.04089 1.21151 0.88451 0.85438 0.74843 1.90718 1.14193 1.87582 1.48360 1.46165 1.10342 1.05052 1.77536 1.20075 0.92107 0.80064 1.03799 1.20920 1.00261 0.99254 0.93743 1.22857 0.92359 0.91774 0.97876 1.67790 1.09756 1.09837 1.30148 1.23262 0.98207 0.99026 0.87063 1.19535 0.96407 0.95981 0.87246 1.84865 1.53717 1.53033 1.38407 1.21962 0.94365 0.95501 0.99273 0.93109 0.96570 0.96581 0.93478 0.93459 0.91761 0.91797 0.89096 0.89038 0.76496 0.90316 0.89990 0.82000 0.82070 0.74923 0.83856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.60 13.29 55.43 0.74 -26.87 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 7 C -0.52 -15.01 9.11 -34.44 -0.31 -15.33 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 11 C -0.10 -1.83 4.50 -26.73 -0.12 -1.95 16 12 C -0.14 -1.79 5.70 -27.88 -0.16 -1.95 16 13 C 0.51 6.78 7.83 -10.98 -0.09 6.69 16 14 O -0.53 -9.30 15.98 5.55 0.09 -9.21 16 15 N -0.74 -6.82 5.55 -61.47 -0.34 -7.16 16 16 C 0.16 1.33 5.82 -5.19 -0.03 1.30 16 17 C -0.14 -0.96 5.26 -104.51 -0.55 -1.51 16 18 C 0.11 0.80 10.85 -17.54 -0.19 0.61 16 19 N -0.47 -3.95 10.36 -13.13 -0.14 -4.08 16 20 C 0.08 0.58 11.14 -17.38 -0.19 0.38 16 21 C 0.06 0.36 6.74 -39.07 -0.26 0.10 16 22 O -0.49 -2.70 13.53 -19.46 -0.26 -2.96 16 23 C -0.08 -0.56 9.81 -39.14 -0.38 -0.94 16 24 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 30 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 31 H 0.09 1.02 8.14 -51.92 -0.42 0.59 16 32 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.40 2.86 8.46 -40.82 -0.35 2.52 16 34 H 0.08 0.68 8.09 -51.93 -0.42 0.26 16 35 H 0.08 0.69 8.09 -51.93 -0.42 0.27 16 36 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.16 0.80 8.06 -52.49 -0.42 0.37 16 38 H 0.39 0.26 9.06 45.56 0.41 0.67 16 39 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 340.90 15.07 5.14 5.14 Total: -1.00 -36.00 340.90 -7.42 -43.42 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -4.96 Total: -2.10 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -2.66 Total: -13.14 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.26 Total: -38.11 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: -0.17 Total: -12.17 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -36.00 -7.42 -43.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886275361.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.432 kcal (2) G-P(sol) polarization free energy of solvation -36.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds