Wall clock time and date at job start Tue Mar 31 2020 00:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48495 * 109.47002 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47093 * 299.99921 * 3 2 1 6 6 H 1.48490 * 109.47068 * 60.00183 * 3 2 1 7 7 C 1.37871 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00152 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 359.97438 * 7 2 1 10 10 C 1.53011 * 109.46921 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46712 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47000 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47208 * 179.97438 * 12 11 10 14 14 O 1.21283 * 119.99803 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99675 * 180.27843 * 13 12 11 16 16 C 1.46497 * 119.99525 * 179.72583 * 15 13 12 17 17 C 1.50706 * 109.47174 * 179.97438 * 16 15 13 18 18 C 1.38251 * 120.39147 * 269.72651 * 17 16 15 19 19 N 1.31850 * 120.88327 * 179.74952 * 18 17 16 20 20 C 1.31837 * 121.78182 * 0.53548 * 19 18 17 21 21 C 1.38704 * 120.68418 * 359.72773 * 20 19 18 22 22 O 1.35910 * 120.47544 * 179.97438 * 21 20 19 23 23 C 1.38533 * 120.38455 * 89.99760 * 17 16 15 24 24 H 0.96999 * 120.00235 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47174 * 60.00647 * 9 7 2 26 26 H 1.08992 * 109.46936 * 299.99779 * 9 7 2 27 27 H 1.08995 * 109.46784 * 60.00085 * 10 9 7 28 28 H 1.09001 * 109.46592 * 299.99709 * 10 9 7 29 29 H 1.09000 * 109.47849 * 59.99915 * 11 10 9 30 30 H 1.08998 * 109.47443 * 299.99783 * 11 10 9 31 31 H 1.09009 * 109.46730 * 59.99606 * 12 11 10 32 32 H 1.08998 * 109.46846 * 300.00150 * 12 11 10 33 33 H 0.97000 * 119.99894 * 359.71837 * 15 13 12 34 34 H 1.08995 * 109.47421 * 299.99467 * 16 15 13 35 35 H 1.09001 * 109.47621 * 60.00103 * 16 15 13 36 36 H 1.08001 * 119.55540 * 0.02562 * 18 17 16 37 37 H 1.07999 * 119.65505 * 179.75421 * 20 19 18 38 38 H 0.96705 * 113.99701 * 270.02448 * 22 21 20 39 39 H 1.07995 * 120.81888 * 359.95906 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0018 11 6 1.4805 -4.9870 -0.0025 12 6 2.4748 -6.1500 -0.0044 13 6 1.7213 -7.4551 -0.0044 14 8 0.5085 -7.4551 -0.0025 15 7 2.3953 -8.6222 -0.0003 16 6 1.6629 -9.8909 0.0058 17 6 2.6422 -11.0364 0.0088 18 6 3.0906 -11.5764 -1.1823 19 7 3.9511 -12.5754 -1.1910 20 6 4.4102 -13.1061 -0.0749 21 6 4.0026 -12.6217 1.1593 22 8 4.4782 -13.1724 2.3072 23 6 3.0993 -11.5643 1.2053 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6249 -2.5571 0.8896 27 1 2.8727 -3.6046 0.8877 28 1 2.8714 -3.6038 -0.8923 29 1 0.8534 -5.0442 -0.8922 30 1 0.8542 -5.0455 0.8877 31 1 3.1022 -6.0930 0.8852 32 1 3.1007 -6.0913 -0.8948 33 1 3.3653 -8.6221 -0.0015 34 1 1.0373 -9.9451 0.8967 35 1 1.0352 -9.9525 -0.8833 36 1 2.7347 -11.1716 -2.1181 37 1 5.1112 -13.9263 -0.1221 38 1 3.9441 -13.9056 2.6424 39 1 2.7632 -11.1647 2.1506 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886275361.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:40 Heat of formation + Delta-G solvation = -98.037974 kcal Electronic energy + Delta-G solvation = -19831.287527 eV Core-core repulsion = 16543.992029 eV Total energy + Delta-G solvation = -3287.295498 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.62029 -40.65062 -38.32270 -36.76728 -36.19147 -34.60259 -33.39749 -31.65391 -31.17205 -28.25596 -26.80753 -24.63631 -24.16512 -22.99075 -21.79473 -21.30984 -19.27679 -18.42046 -18.04301 -17.99774 -17.84485 -17.08246 -16.88027 -16.49145 -16.05280 -15.63657 -14.88123 -14.67548 -14.50110 -14.30874 -14.22263 -14.13185 -13.56938 -13.51048 -13.39819 -13.22255 -12.83675 -12.31487 -12.29628 -12.13696 -12.12032 -11.36495 -11.36414 -11.20379 -11.02515 -10.68126 -10.55194 -10.45626 -10.15196 -9.91247 -8.18385 -6.30319 -0.15074 0.08585 1.40713 1.41572 1.55056 1.65033 2.18088 2.42256 2.67116 3.02343 3.14305 3.43102 3.62476 3.81400 3.86617 3.90416 4.08067 4.08759 4.17742 4.44297 4.62560 4.66932 4.71019 4.74479 4.86913 4.89995 4.99887 5.09711 5.21376 5.32658 5.34435 5.42454 5.48636 5.58644 5.79516 5.89201 6.26175 6.50629 6.67338 6.87617 6.88438 7.24545 7.39237 8.93998 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.041443 B = 0.002168 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.462638 B =12913.394623 C =13082.205510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.970 3.030 4 H -0.258 1.258 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.540 4.540 8 H 0.065 0.935 9 C 0.017 3.983 10 C -0.096 4.096 11 C -0.096 4.096 12 C -0.129 4.129 13 C 0.515 3.485 14 O -0.584 6.584 15 N -0.717 5.717 16 C 0.166 3.834 17 C -0.134 4.134 18 C 0.102 3.898 19 N -0.489 5.489 20 C 0.076 3.924 21 C 0.060 3.940 22 O -0.500 6.500 23 C -0.087 4.087 24 H 0.263 0.737 25 H -0.015 1.015 26 H -0.015 1.015 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.044 0.956 30 H 0.043 0.957 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.415 0.585 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.172 0.828 37 H 0.178 0.822 38 H 0.415 0.585 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.635 -29.963 2.062 31.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.794 3.206 4 H -0.181 1.181 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.578 4.578 8 H 0.084 0.916 9 C -0.020 4.020 10 C -0.134 4.134 11 C -0.134 4.134 12 C -0.169 4.169 13 C 0.303 3.697 14 O -0.464 6.464 15 N -0.370 5.370 16 C 0.042 3.958 17 C -0.137 4.137 18 C -0.055 4.055 19 N -0.198 5.198 20 C -0.082 4.082 21 C 0.013 3.987 22 O -0.312 6.312 23 C -0.114 4.114 24 H 0.071 0.929 25 H 0.004 0.996 26 H 0.003 0.997 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.252 0.748 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.189 0.811 37 H 0.195 0.805 38 H 0.275 0.725 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 10.357 -29.811 1.237 31.584 hybrid contribution -0.482 0.941 0.914 1.398 sum 9.875 -28.871 2.152 30.588 Atomic orbital electron populations 1.70136 1.08026 1.27667 1.51990 1.26098 0.95810 1.03748 0.94868 0.85330 0.79176 0.78440 0.77672 1.18140 1.20489 1.20474 1.21783 0.93726 0.92244 1.50027 0.91634 1.19073 0.94725 0.93800 0.94367 1.21453 0.97819 0.92842 1.01271 1.21248 0.97496 0.93550 1.01139 1.21680 0.98973 0.89551 1.06675 1.21137 0.87724 0.86469 0.74366 1.90710 1.16293 1.88276 1.51094 1.45965 1.11030 1.04453 1.75565 1.20071 0.92311 0.79800 1.03597 1.20693 1.00178 0.98911 0.93904 1.23030 0.92297 0.91717 0.98459 1.67805 1.10514 1.10499 1.31015 1.23562 0.98324 0.99341 0.86964 1.19512 0.95907 0.95815 0.87494 1.84813 1.54476 1.54043 1.37913 1.22104 0.94270 0.95500 0.99491 0.92865 0.99645 0.99654 0.92144 0.92122 0.93728 0.93773 0.86460 0.86380 0.74843 0.90639 0.90198 0.81080 0.80487 0.72465 0.82968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.13 13.29 21.45 0.28 -58.84 16 2 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 3 Si 0.97 44.97 29.54 68.60 2.03 47.00 16 4 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.54 -31.40 9.11 25.60 0.23 -31.16 16 8 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 9 C 0.02 0.96 4.97 29.85 0.15 1.11 16 10 C -0.10 -3.92 5.15 30.60 0.16 -3.76 16 11 C -0.10 -3.41 4.50 30.59 0.14 -3.28 16 12 C -0.13 -3.06 5.70 29.85 0.17 -2.89 16 13 C 0.51 12.98 7.83 87.66 0.69 13.67 16 14 O -0.58 -20.59 15.98 -3.04 -0.05 -20.64 16 15 N -0.72 -11.90 5.55 -466.79 -2.59 -14.49 16 16 C 0.17 2.51 5.82 85.64 0.50 3.01 16 17 C -0.13 -1.65 5.26 -19.79 -0.10 -1.76 16 18 C 0.10 1.37 10.85 84.69 0.92 2.29 16 19 N -0.49 -7.64 10.36 -195.45 -2.02 -9.66 16 20 C 0.08 0.93 11.14 84.80 0.94 1.88 16 21 C 0.06 0.67 6.74 22.60 0.15 0.82 16 22 O -0.50 -4.38 13.53 -92.54 -1.25 -5.63 16 23 C -0.09 -0.99 9.81 22.56 0.22 -0.77 16 24 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 25 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 26 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 27 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 30 H 0.04 1.71 8.10 -2.39 -0.02 1.70 16 31 H 0.12 2.21 8.14 -2.38 -0.02 2.19 16 32 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.41 4.74 8.46 -92.71 -0.78 3.96 16 34 H 0.08 1.24 8.09 -2.39 -0.02 1.22 16 35 H 0.08 1.28 8.09 -2.39 -0.02 1.27 16 36 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 37 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 38 H 0.42 -0.41 9.06 -74.05 -0.67 -1.08 16 39 H 0.15 1.42 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -79.39 340.90 0.63 -78.75 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -0.39 Total: 4.39 kcal Atomic # 6 Polarization: -25.49 SS G_CDS: 4.63 Total: -20.87 kcal Atomic # 7 Polarization: -78.67 SS G_CDS: -4.33 Total: -83.00 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -1.30 Total: -26.27 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -79.39 0.63 -78.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886275361.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.285 kcal (2) G-P(sol) polarization free energy of solvation -79.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds