Wall clock time and date at job start Mon Mar 30 2020 23:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47195 * 274.91779 * 3 2 1 5 5 C 1.37100 * 120.00314 * 264.23397 * 4 3 2 6 6 H 1.08001 * 119.99500 * 197.72079 * 5 4 3 7 7 C 1.38943 * 119.99647 * 17.72163 * 5 4 3 8 8 N 1.31408 * 120.00658 * 21.38805 * 7 5 4 9 9 Si 1.86807 * 119.99682 * 201.39062 * 7 5 4 10 10 H 1.48496 * 109.47238 * 89.99773 * 9 7 5 11 11 H 1.48499 * 109.46998 * 210.00254 * 9 7 5 12 12 H 1.48501 * 109.46883 * 329.99624 * 9 7 5 13 13 C 1.34783 * 119.99501 * 84.23457 * 4 3 2 14 14 O 1.21287 * 119.99675 * 180.02562 * 13 4 3 15 15 C 1.50700 * 120.00152 * 0.27528 * 13 4 3 16 16 C 1.52994 * 109.47192 * 179.72668 * 15 13 4 17 17 H 1.09000 * 110.29557 * 307.15176 * 16 15 13 18 18 C 1.54547 * 110.33523 * 184.99926 * 16 15 13 19 19 C 1.54716 * 104.06998 * 217.44717 * 18 16 15 20 20 C 1.53555 * 103.75779 * 0.69627 * 19 18 16 21 21 C 1.52805 * 115.46519 * 253.20168 * 20 19 18 22 22 C 1.53957 * 86.79058 * 217.65992 * 21 20 19 23 23 C 1.52799 * 115.48452 * 152.48992 * 20 19 18 24 24 O 1.43353 * 106.12733 * 22.82449 * 20 19 18 25 25 H 1.09001 * 109.46594 * 154.92584 * 3 2 1 26 26 H 1.08998 * 109.47115 * 34.92309 * 3 2 1 27 27 H 0.96999 * 120.00569 * 179.97438 * 8 7 5 28 28 H 1.09008 * 109.46772 * 299.72621 * 15 13 4 29 29 H 1.09001 * 109.47223 * 59.72073 * 15 13 4 30 30 H 1.09001 * 110.50752 * 336.09640 * 18 16 15 31 31 H 1.08998 * 110.50974 * 98.65882 * 18 16 15 32 32 H 1.08998 * 110.56956 * 119.26805 * 19 18 16 33 33 H 1.09000 * 110.56417 * 241.97884 * 19 18 16 34 34 H 1.09000 * 113.66672 * 332.13714 * 21 20 19 35 35 H 1.09005 * 113.66276 * 103.18625 * 21 20 19 36 36 H 1.09004 * 113.58193 * 270.11944 * 22 21 20 37 37 H 1.09003 * 113.58905 * 139.30779 * 22 21 20 38 38 H 1.08993 * 113.66308 * 256.79468 * 23 20 19 39 39 H 1.09002 * 113.66246 * 27.84764 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0965 -0.1175 1.3761 5 6 3.4369 1.0075 2.0818 6 1 4.0533 0.9251 2.9648 7 6 2.9890 2.2536 1.6608 8 7 1.9357 2.3440 0.8802 9 14 3.8841 3.8005 2.2045 10 1 4.9488 4.1274 1.2224 11 1 2.9207 4.9278 2.2839 12 1 4.4942 3.5759 3.5397 13 6 3.2111 -1.3324 1.9485 14 8 3.6150 -1.4303 3.0879 15 6 2.8427 -2.5695 1.1707 16 6 3.0697 -3.8063 2.0423 17 1 4.0830 -3.8050 2.4439 18 6 2.8179 -5.0932 1.2244 19 6 2.1391 -6.0520 2.2313 20 6 2.0492 -5.2233 3.5209 21 6 3.0216 -5.6249 4.6291 22 6 1.8823 -5.3227 5.6195 23 6 0.9040 -5.5940 4.4621 24 8 2.1016 -3.8492 3.1157 25 1 2.9709 0.9317 -0.4355 26 1 2.9717 -0.8418 -0.5883 27 1 1.6228 3.2140 0.5867 28 1 1.7933 -2.5172 0.8805 29 1 3.4638 -2.6355 0.2774 30 1 2.1536 -4.8883 0.3849 31 1 3.7603 -5.5117 0.8711 32 1 1.1439 -6.3298 1.8844 33 1 2.7513 -6.9405 2.3862 34 1 3.3084 -6.6761 4.5998 35 1 3.8753 -4.9541 4.7264 36 1 1.8700 -4.2899 5.9680 37 1 1.8076 -6.0452 6.4322 38 1 0.0655 -4.8985 4.4259 39 1 0.5950 -6.6365 4.3857 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889039705.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:46 Heat of formation + Delta-G solvation = -21.470374 kcal Electronic energy + Delta-G solvation = -22175.080171 eV Core-core repulsion = 18891.104893 eV Total energy + Delta-G solvation = -3283.975278 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.37849 -38.71440 -36.25473 -35.56199 -34.24276 -32.17045 -31.78212 -30.36524 -27.40311 -26.11665 -25.59370 -24.27785 -22.22726 -20.90454 -19.16144 -18.99625 -17.85823 -16.69518 -16.19166 -15.82519 -15.59756 -15.07632 -14.85753 -14.48270 -14.04685 -13.65265 -13.30368 -12.93282 -12.88427 -12.70635 -12.33730 -12.14810 -11.84411 -11.67015 -11.53202 -11.45546 -11.19637 -11.11818 -11.00568 -10.85784 -10.62036 -10.51610 -10.35308 -10.30207 -10.21018 -10.01092 -9.22368 -9.19816 -8.48824 -7.97577 -6.44531 -3.93557 3.13869 3.25249 3.29647 3.61812 3.84562 3.94822 4.04926 4.16548 4.58018 4.62743 4.67841 4.88144 4.90347 4.94421 5.11366 5.19807 5.23723 5.29558 5.44744 5.54332 5.63458 5.66108 5.77640 5.81031 5.86487 5.95009 5.99249 6.00548 6.06734 6.18824 6.21664 6.36355 6.42516 6.47470 6.54997 7.34006 7.52871 7.97248 8.35209 8.79321 9.07663 9.26522 9.82447 10.61991 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023653 B = 0.004903 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.496425 B = 5709.572218 C = 6200.406739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.246 3.754 3 C 0.222 3.778 4 N -0.449 5.449 5 C -0.311 4.311 6 H 0.108 0.892 7 C 0.030 3.970 8 N -0.880 5.880 9 Si 0.926 3.074 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.270 1.270 13 C 0.461 3.539 14 O -0.561 6.561 15 C -0.135 4.135 16 C 0.099 3.901 17 H 0.076 0.924 18 C -0.153 4.153 19 C -0.138 4.138 20 C 0.079 3.921 21 C -0.157 4.157 22 C -0.135 4.135 23 C -0.130 4.130 24 O -0.326 6.326 25 H 0.127 0.873 26 H 0.082 0.918 27 H 0.272 0.728 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.520 -14.621 -1.571 15.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.073 4.073 3 C 0.095 3.905 4 N -0.170 5.170 5 C -0.438 4.438 6 H 0.125 0.875 7 C -0.173 4.173 8 N -0.519 5.519 9 Si 0.753 3.247 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.194 1.194 13 C 0.249 3.751 14 O -0.442 6.442 15 C -0.175 4.175 16 C 0.041 3.959 17 H 0.094 0.906 18 C -0.191 4.191 19 C -0.176 4.176 20 C 0.038 3.962 21 C -0.194 4.194 22 C -0.172 4.172 23 C -0.167 4.167 24 O -0.244 6.244 25 H 0.144 0.856 26 H 0.100 0.900 27 H 0.083 0.917 28 H 0.105 0.895 29 H 0.113 0.887 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.833 -14.310 -0.979 14.460 hybrid contribution 0.691 0.921 0.018 1.151 sum 2.524 -13.389 -0.960 13.659 Atomic orbital electron populations 1.80888 1.13664 1.12143 1.08684 1.29351 0.95416 0.90205 0.92310 1.18723 0.81586 1.03894 0.86338 1.43668 1.57242 1.05722 1.10409 1.19713 1.29756 0.82667 1.11627 0.87476 1.25253 0.95046 0.99485 0.97528 1.69860 1.19988 1.25933 1.36153 0.85913 0.78993 0.80472 0.79308 1.20217 1.21187 1.19405 1.20020 0.83516 0.84182 0.87370 1.90559 1.49409 1.86031 1.18222 1.21762 1.03401 0.93622 0.98719 1.22682 0.93629 0.92904 0.86642 0.90640 1.23066 1.01299 0.95817 0.98944 1.22734 1.01341 0.98369 0.95114 1.22572 0.97050 0.83811 0.92749 1.23325 0.98211 1.01279 0.96613 1.22811 0.95982 1.02238 0.96164 1.22898 0.97192 1.01391 0.95258 1.89147 1.60565 1.22683 1.52005 0.85566 0.90012 0.91744 0.89513 0.88697 0.90634 0.90589 0.90781 0.90761 0.89819 0.90509 0.89591 0.91747 0.90565 0.89306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.53 18.54 42.15 0.78 -10.75 16 2 C 0.25 5.52 12.97 -20.76 -0.27 5.25 16 3 C 0.22 4.43 4.91 -6.83 -0.03 4.39 16 4 N -0.45 -10.62 2.60 -117.93 -0.31 -10.93 16 5 C -0.31 -8.14 9.32 -14.93 -0.14 -8.28 16 6 H 0.11 2.98 7.39 -52.49 -0.39 2.59 16 7 C 0.03 0.75 4.87 -17.47 -0.09 0.67 16 8 N -0.88 -22.64 9.48 55.50 0.53 -22.11 16 9 Si 0.93 19.97 29.60 -169.99 -5.03 14.94 16 10 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 11 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 13 C 0.46 10.61 7.49 -10.98 -0.08 10.53 16 14 O -0.56 -14.99 15.25 -1.39 -0.02 -15.01 16 15 C -0.13 -2.34 3.93 -27.89 -0.11 -2.45 16 16 C 0.10 1.63 2.76 -25.92 -0.07 1.56 16 17 H 0.08 1.30 7.91 -51.93 -0.41 0.89 16 18 C -0.15 -1.85 6.65 -25.02 -0.17 -2.02 16 19 C -0.14 -1.59 6.48 -25.54 -0.17 -1.75 16 20 C 0.08 1.12 1.13 -90.55 -0.10 1.02 16 21 C -0.16 -2.00 7.57 -26.33 -0.20 -2.20 16 22 C -0.13 -1.71 8.09 -25.74 -0.21 -1.92 16 23 C -0.13 -1.64 7.61 -26.33 -0.20 -1.84 16 24 O -0.33 -6.17 10.69 -42.17 -0.45 -6.62 16 25 H 0.13 2.57 6.46 -51.93 -0.34 2.23 16 26 H 0.08 1.21 6.67 -51.93 -0.35 0.86 16 27 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 28 H 0.09 1.55 7.53 -51.92 -0.39 1.16 16 29 H 0.09 1.28 7.41 -51.93 -0.38 0.89 16 30 H 0.07 0.86 7.87 -51.93 -0.41 0.45 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.80 8.12 -51.93 -0.42 0.38 16 33 H 0.07 0.70 7.85 -51.93 -0.41 0.30 16 34 H 0.08 0.86 7.97 -51.93 -0.41 0.44 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 323.56 15.07 4.88 4.88 Total: -1.00 -32.44 323.56 -7.04 -39.48 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -5.58 Total: 3.17 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -1.83 Total: 2.95 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: 1.00 Total: -43.79 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.47 Total: -21.63 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.03 Total: 14.94 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.44 -7.04 -39.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889039705.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.012 kcal (2) G-P(sol) polarization free energy of solvation -32.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds