Wall clock time and date at job start Mon Mar 30 2020 23:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47195 * 274.91779 * 3 2 1 5 5 C 1.37100 * 120.00314 * 264.23397 * 4 3 2 6 6 H 1.08001 * 119.99500 * 197.72079 * 5 4 3 7 7 C 1.38943 * 119.99647 * 17.72163 * 5 4 3 8 8 N 1.31408 * 120.00658 * 21.38805 * 7 5 4 9 9 Si 1.86807 * 119.99682 * 201.39062 * 7 5 4 10 10 H 1.48496 * 109.47238 * 89.99773 * 9 7 5 11 11 H 1.48499 * 109.46998 * 210.00254 * 9 7 5 12 12 H 1.48501 * 109.46883 * 329.99624 * 9 7 5 13 13 C 1.34783 * 119.99501 * 84.23457 * 4 3 2 14 14 O 1.21287 * 119.99675 * 180.02562 * 13 4 3 15 15 C 1.50700 * 120.00152 * 0.27528 * 13 4 3 16 16 C 1.52994 * 109.47192 * 179.72668 * 15 13 4 17 17 H 1.09000 * 110.29557 * 307.15176 * 16 15 13 18 18 C 1.54547 * 110.33523 * 184.99926 * 16 15 13 19 19 C 1.54716 * 104.06998 * 217.44717 * 18 16 15 20 20 C 1.53555 * 103.75779 * 0.69627 * 19 18 16 21 21 C 1.52805 * 115.46519 * 253.20168 * 20 19 18 22 22 C 1.53957 * 86.79058 * 217.65992 * 21 20 19 23 23 C 1.52799 * 115.48452 * 152.48992 * 20 19 18 24 24 O 1.43353 * 106.12733 * 22.82449 * 20 19 18 25 25 H 1.09001 * 109.46594 * 154.92584 * 3 2 1 26 26 H 1.08998 * 109.47115 * 34.92309 * 3 2 1 27 27 H 0.96999 * 120.00569 * 179.97438 * 8 7 5 28 28 H 1.09008 * 109.46772 * 299.72621 * 15 13 4 29 29 H 1.09001 * 109.47223 * 59.72073 * 15 13 4 30 30 H 1.09001 * 110.50752 * 336.09640 * 18 16 15 31 31 H 1.08998 * 110.50974 * 98.65882 * 18 16 15 32 32 H 1.08998 * 110.56956 * 119.26805 * 19 18 16 33 33 H 1.09000 * 110.56417 * 241.97884 * 19 18 16 34 34 H 1.09000 * 113.66672 * 332.13714 * 21 20 19 35 35 H 1.09005 * 113.66276 * 103.18625 * 21 20 19 36 36 H 1.09004 * 113.58193 * 270.11944 * 22 21 20 37 37 H 1.09003 * 113.58905 * 139.30779 * 22 21 20 38 38 H 1.08993 * 113.66308 * 256.79468 * 23 20 19 39 39 H 1.09002 * 113.66246 * 27.84764 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0965 -0.1175 1.3761 5 6 3.4369 1.0075 2.0818 6 1 4.0533 0.9251 2.9648 7 6 2.9890 2.2536 1.6608 8 7 1.9357 2.3440 0.8802 9 14 3.8841 3.8005 2.2045 10 1 4.9488 4.1274 1.2224 11 1 2.9207 4.9278 2.2839 12 1 4.4942 3.5759 3.5397 13 6 3.2111 -1.3324 1.9485 14 8 3.6150 -1.4303 3.0879 15 6 2.8427 -2.5695 1.1707 16 6 3.0697 -3.8063 2.0423 17 1 4.0830 -3.8050 2.4439 18 6 2.8179 -5.0932 1.2244 19 6 2.1391 -6.0520 2.2313 20 6 2.0492 -5.2233 3.5209 21 6 3.0216 -5.6249 4.6291 22 6 1.8823 -5.3227 5.6195 23 6 0.9040 -5.5940 4.4621 24 8 2.1016 -3.8492 3.1157 25 1 2.9709 0.9317 -0.4355 26 1 2.9717 -0.8418 -0.5883 27 1 1.6228 3.2140 0.5867 28 1 1.7933 -2.5172 0.8805 29 1 3.4638 -2.6355 0.2774 30 1 2.1536 -4.8883 0.3849 31 1 3.7603 -5.5117 0.8711 32 1 1.1439 -6.3298 1.8844 33 1 2.7513 -6.9405 2.3862 34 1 3.3084 -6.6761 4.5998 35 1 3.8753 -4.9541 4.7264 36 1 1.8700 -4.2899 5.9680 37 1 1.8076 -6.0452 6.4322 38 1 0.0655 -4.8985 4.4259 39 1 0.5950 -6.6365 4.3857 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889039705.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:44 Heat of formation + Delta-G solvation = -41.662587 kcal Electronic energy + Delta-G solvation = -22175.955771 eV Core-core repulsion = 18891.104893 eV Total energy + Delta-G solvation = -3284.850878 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.51282 -40.42746 -37.70739 -37.11663 -36.11319 -33.84461 -33.15942 -31.66796 -29.14161 -27.47986 -26.68606 -25.82964 -23.39708 -22.00415 -20.72412 -20.16570 -19.73107 -18.29907 -17.88710 -17.18857 -16.71264 -16.55291 -16.17585 -15.94375 -15.59391 -15.19178 -14.69650 -14.55772 -14.30714 -13.88887 -13.86156 -13.46248 -13.30011 -13.19963 -13.03915 -12.96112 -12.78326 -12.45327 -12.31482 -12.24116 -12.11410 -12.07477 -11.83727 -11.64692 -11.27255 -11.09788 -11.00553 -10.38736 -10.34834 -9.89575 -8.39262 -5.94852 1.39905 1.46681 1.57219 1.84383 2.09980 2.26571 2.36435 2.86765 3.00857 3.13211 3.57263 3.62090 3.64683 3.77837 3.89127 3.94846 4.11716 4.16862 4.19659 4.40286 4.52530 4.54503 4.65842 4.77071 4.82365 4.83677 4.92203 4.94283 4.98072 5.01035 5.07611 5.20543 5.28289 5.35076 5.47843 5.49198 6.04931 6.24336 6.43463 7.01743 7.15477 7.38733 7.98017 8.64730 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023653 B = 0.004903 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.496425 B = 5709.572218 C = 6200.406739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C 0.258 3.742 3 C 0.222 3.778 4 N -0.461 5.461 5 C -0.340 4.340 6 H 0.078 0.922 7 C 0.003 3.997 8 N -0.895 5.895 9 Si 0.986 3.014 10 H -0.256 1.256 11 H -0.287 1.287 12 H -0.280 1.280 13 C 0.450 3.550 14 O -0.610 6.610 15 C -0.125 4.125 16 C 0.092 3.908 17 H 0.057 0.943 18 C -0.143 4.143 19 C -0.131 4.131 20 C 0.058 3.942 21 C -0.150 4.150 22 C -0.139 4.139 23 C -0.125 4.125 24 O -0.376 6.376 25 H 0.124 0.876 26 H 0.143 0.857 27 H 0.274 0.726 28 H 0.084 0.916 29 H 0.142 0.858 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.119 0.881 35 H 0.048 0.952 36 H 0.049 0.951 37 H 0.091 0.909 38 H 0.053 0.947 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.086 -16.681 -3.318 17.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.192 5.192 2 C -0.060 4.060 3 C 0.095 3.905 4 N -0.182 5.182 5 C -0.467 4.467 6 H 0.095 0.905 7 C -0.198 4.198 8 N -0.534 5.534 9 Si 0.811 3.189 10 H -0.181 1.181 11 H -0.213 1.213 12 H -0.206 1.206 13 C 0.241 3.759 14 O -0.495 6.495 15 C -0.164 4.164 16 C 0.034 3.966 17 H 0.075 0.925 18 C -0.181 4.181 19 C -0.168 4.168 20 C 0.018 3.982 21 C -0.188 4.188 22 C -0.177 4.177 23 C -0.162 4.162 24 O -0.296 6.296 25 H 0.142 0.858 26 H 0.160 0.840 27 H 0.084 0.916 28 H 0.103 0.897 29 H 0.160 0.840 30 H 0.105 0.895 31 H 0.121 0.879 32 H 0.102 0.898 33 H 0.120 0.880 34 H 0.138 0.862 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.110 0.890 38 H 0.072 0.928 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.393 -16.377 -2.762 16.780 hybrid contribution 0.505 1.581 0.649 1.782 sum 2.897 -14.796 -2.113 15.224 Atomic orbital electron populations 1.80888 1.14914 1.13599 1.09847 1.29875 0.95942 0.88991 0.91171 1.19112 0.79922 1.06430 0.84995 1.43868 1.57212 1.05369 1.11771 1.19583 1.30712 0.84468 1.11952 0.90450 1.25877 0.95205 1.01405 0.97330 1.69945 1.20400 1.26516 1.36586 0.85030 0.78191 0.76936 0.78739 1.18051 1.21276 1.20566 1.21082 0.81952 0.85588 0.87282 1.90525 1.51301 1.86966 1.20671 1.21817 1.03837 0.91030 0.99760 1.22782 0.92380 0.94614 0.86805 0.92504 1.23045 1.03060 0.93366 0.98582 1.22755 1.02480 0.98570 0.93040 1.22953 0.98043 0.82487 0.94692 1.23355 0.96789 1.02609 0.96015 1.22781 0.96627 1.00891 0.97376 1.22978 0.95909 1.02813 0.94500 1.89100 1.61209 1.25983 1.53300 0.85830 0.83999 0.91649 0.89741 0.84001 0.89504 0.87854 0.89812 0.87957 0.86239 0.93308 0.93228 0.89019 0.92822 0.85705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -24.79 18.54 20.01 0.37 -24.41 16 2 C 0.26 11.39 12.97 89.44 1.16 12.55 16 3 C 0.22 8.51 4.91 84.57 0.42 8.92 16 4 N -0.46 -21.95 2.60 -645.41 -1.68 -23.63 16 5 C -0.34 -18.28 9.32 84.04 0.78 -17.49 16 6 H 0.08 4.54 7.39 -2.91 -0.02 4.52 16 7 C 0.00 0.17 4.87 84.93 0.41 0.59 16 8 N -0.90 -45.96 9.48 21.66 0.21 -45.76 16 9 Si 0.99 41.20 29.60 68.60 2.03 43.23 16 10 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 11 H -0.29 -11.97 7.11 99.48 0.71 -11.27 16 12 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 13 C 0.45 21.07 7.49 87.66 0.66 21.72 16 14 O -0.61 -34.24 15.25 3.59 0.05 -34.19 16 15 C -0.12 -4.16 3.93 29.85 0.12 -4.05 16 16 C 0.09 2.94 2.76 31.12 0.09 3.03 16 17 H 0.06 1.98 7.91 -2.39 -0.02 1.96 16 18 C -0.14 -2.96 6.65 31.71 0.21 -2.75 16 19 C -0.13 -2.55 6.48 31.37 0.20 -2.35 16 20 C 0.06 1.59 1.13 -10.75 -0.01 1.57 16 21 C -0.15 -3.70 7.57 30.85 0.23 -3.47 16 22 C -0.14 -3.54 8.09 31.23 0.25 -3.29 16 23 C -0.12 -3.02 7.61 30.85 0.23 -2.78 16 24 O -0.38 -14.55 10.69 -142.34 -1.52 -16.07 16 25 H 0.12 4.86 6.46 -2.39 -0.02 4.85 16 26 H 0.14 3.67 6.67 -2.39 -0.02 3.65 16 27 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16 28 H 0.08 2.90 7.53 -2.38 -0.02 2.88 16 29 H 0.14 3.28 7.41 -2.39 -0.02 3.27 16 30 H 0.09 1.62 7.87 -2.39 -0.02 1.60 16 31 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.08 1.48 8.12 -2.39 -0.02 1.46 16 33 H 0.10 1.43 7.85 -2.39 -0.02 1.41 16 34 H 0.12 2.05 7.97 -2.39 -0.02 2.03 16 35 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -75.43 323.56 5.27 -70.17 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: 1.05 Total: 18.45 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: 4.75 Total: 12.21 kcal Atomic # 7 Polarization: -92.70 SS G_CDS: -1.10 Total: -93.80 kcal Atomic # 8 Polarization: -48.79 SS G_CDS: -1.47 Total: -50.26 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Total: -75.43 5.27 -70.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889039705.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.505 kcal (2) G-P(sol) polarization free energy of solvation -75.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds