Wall clock time and date at job start Tue Mar 31 2020 00:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99793 * 2 1 4 4 H 1.48501 * 109.47231 * 269.99583 * 3 2 1 5 5 H 1.48502 * 109.47235 * 30.00173 * 3 2 1 6 6 H 1.48509 * 109.46889 * 149.99780 * 3 2 1 7 7 C 1.37875 * 120.00419 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00625 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99671 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47174 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46996 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.46674 * 180.02562 * 11 10 9 13 13 O 1.21279 * 120.00343 * 0.02562 * 12 11 10 14 14 N 1.34781 * 119.99757 * 180.02562 * 12 11 10 15 15 C 1.46500 * 119.99988 * 179.97438 * 14 12 11 16 16 C 1.50696 * 109.47081 * 180.02562 * 15 14 12 17 17 C 1.35449 * 126.77663 * 89.98365 * 16 15 14 18 18 C 1.41387 * 103.98917 * 180.02562 * 17 16 15 19 19 C 1.50694 * 126.80435 * 179.97438 * 18 17 16 20 20 C 1.52999 * 117.49958 * 343.74850 * 19 18 17 21 21 C 1.52995 * 117.50195 * 275.08673 * 19 18 17 22 22 N 1.30173 * 106.39214 * 0.02562 * 18 17 16 23 23 O 1.20923 * 111.60616 * 359.97438 * 22 18 17 24 24 H 0.97002 * 120.00247 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47043 * 59.99940 * 9 7 2 26 26 H 1.09001 * 109.47231 * 300.00055 * 9 7 2 27 27 H 1.08998 * 109.46844 * 60.00235 * 10 9 7 28 28 H 1.09001 * 109.47426 * 300.00352 * 10 9 7 29 29 H 1.09005 * 109.46592 * 60.00852 * 11 10 9 30 30 H 1.08996 * 109.47676 * 300.00097 * 11 10 9 31 31 H 0.96997 * 119.99760 * 0.02562 * 14 12 11 32 32 H 1.08998 * 109.46906 * 60.00515 * 15 14 12 33 33 H 1.08996 * 109.47017 * 300.00412 * 15 14 12 34 34 H 1.08005 * 128.00762 * 359.97438 * 17 16 15 35 35 H 1.09005 * 115.55017 * 129.41236 * 19 18 17 36 36 H 1.08998 * 117.49821 * 359.97438 * 20 19 18 37 37 H 1.09000 * 117.50048 * 145.02131 * 20 19 18 38 38 H 1.08998 * 117.50084 * 214.97900 * 21 19 18 39 39 H 1.09006 * 117.49384 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4597 -6.1324 0.0018 13 8 3.6520 -5.9108 0.0022 14 7 2.0104 -7.4032 0.0019 15 6 2.9624 -8.5167 0.0020 16 6 2.2090 -9.8218 0.0015 17 6 1.8036 -10.5237 -1.0837 18 6 1.1513 -11.6524 -0.5366 19 6 0.5008 -12.7773 -1.2997 20 6 0.1970 -12.5431 -2.7809 21 6 -0.9439 -12.5754 -1.7609 22 7 1.2230 -11.5269 0.7571 23 8 1.8068 -10.5167 1.0748 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.8719 -3.6043 0.8905 28 1 2.8720 -3.6043 -0.8894 29 1 0.8534 -5.0450 -0.8887 30 1 0.8539 -5.0446 0.8913 31 1 1.0568 -7.5804 0.0012 32 1 3.5890 -8.4589 0.8920 33 1 3.5891 -8.4589 -0.8880 34 1 1.9451 -10.2776 -2.1258 35 1 0.7976 -13.7823 -0.9997 36 1 0.4673 -11.5753 -3.2032 37 1 0.2935 -13.3941 -3.4551 38 1 -1.5976 -13.4476 -1.7646 39 1 -1.4241 -11.6290 -1.5119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894264025.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:41 Heat of formation + Delta-G solvation = 9.395372 kcal Electronic energy + Delta-G solvation = -20089.698388 eV Core-core repulsion = 16807.061549 eV Total energy + Delta-G solvation = -3282.636839 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -46.06570 -40.76477 -38.51678 -36.60340 -35.99290 -34.30088 -34.02338 -32.94700 -29.99193 -27.77465 -25.69624 -25.46142 -23.78672 -22.97250 -22.32007 -21.36899 -20.81024 -18.89131 -18.71738 -18.31890 -17.61627 -17.02948 -16.85288 -16.52294 -16.41273 -15.56666 -15.41205 -15.05536 -14.76655 -14.41212 -14.19619 -13.77365 -13.63067 -13.06234 -13.02540 -12.66882 -12.58027 -12.49311 -12.41476 -12.38421 -12.11386 -11.51991 -11.46060 -11.38719 -11.26644 -11.05521 -10.73571 -10.52643 -10.46669 -10.22086 -8.18728 -6.28390 0.21584 1.07790 1.41051 1.41959 1.53477 1.63405 1.86498 2.34203 2.44098 2.68680 3.04235 3.14454 3.39012 3.82357 3.85897 3.93272 4.01353 4.07767 4.22980 4.27390 4.31617 4.36646 4.57460 4.65454 4.75218 4.84364 4.90796 5.00840 5.02118 5.08374 5.14069 5.20700 5.20847 5.29394 5.57148 5.78712 5.89690 6.29214 6.44942 6.87683 7.16052 7.20087 7.40298 8.92751 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034689 B = 0.002396 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.978576 B =11682.525132 C =12085.463985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.961 3.039 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.546 4.546 8 H 0.052 0.948 9 C 0.024 3.976 10 C -0.083 4.083 11 C -0.131 4.131 12 C 0.525 3.475 13 O -0.575 6.575 14 N -0.720 5.720 15 C 0.205 3.795 16 C -0.045 4.045 17 C -0.196 4.196 18 C 0.042 3.958 19 C -0.110 4.110 20 C -0.146 4.146 21 C -0.165 4.165 22 N -0.385 5.385 23 O 0.092 5.908 24 H 0.264 0.736 25 H 0.001 0.999 26 H 0.000 1.000 27 H 0.041 0.959 28 H 0.044 0.956 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.416 0.584 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.199 0.801 35 H 0.126 0.874 36 H 0.106 0.894 37 H 0.122 0.878 38 H 0.116 0.884 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.472 -27.572 -5.376 28.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.786 3.214 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.121 4.121 11 C -0.171 4.171 12 C 0.313 3.687 13 O -0.454 6.454 14 N -0.374 5.374 15 C 0.081 3.919 16 C -0.109 4.109 17 C -0.217 4.217 18 C -0.116 4.116 19 C -0.129 4.129 20 C -0.183 4.183 21 C -0.202 4.202 22 N -0.089 5.089 23 O 0.026 5.974 24 H 0.073 0.927 25 H 0.020 0.980 26 H 0.018 0.982 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.129 0.871 30 H 0.125 0.875 31 H 0.252 0.748 32 H 0.107 0.893 33 H 0.132 0.868 34 H 0.216 0.784 35 H 0.144 0.856 36 H 0.124 0.876 37 H 0.141 0.859 38 H 0.134 0.866 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.176 -28.059 -4.317 28.390 hybrid contribution 0.035 1.156 -0.405 1.226 sum -0.141 -26.903 -4.722 27.314 Atomic orbital electron populations 1.70066 1.07508 1.27742 1.51735 1.25910 0.95816 1.03086 0.94794 0.85509 0.78638 0.78746 0.78540 1.19681 1.20478 1.19238 1.21711 0.93400 0.92798 1.50481 0.92931 1.19035 0.94275 0.92461 0.95518 1.21170 0.97615 0.92821 1.00525 1.21689 0.97946 0.91543 1.05883 1.20969 0.89434 0.84163 0.74143 1.90691 1.18727 1.85254 1.50764 1.45922 1.11044 1.04303 1.76162 1.19608 0.89638 0.77048 1.05581 1.24398 1.02437 0.97744 0.86302 1.22784 1.02462 0.94423 1.02050 1.23142 1.00735 0.98327 0.89357 1.20262 0.99879 0.95240 0.97478 1.23183 1.00484 1.05043 0.89580 1.23115 0.90111 1.04200 1.02822 1.73863 1.14280 1.03224 1.17504 1.84858 1.53426 1.25360 1.33792 0.92715 0.98013 0.98187 0.94003 0.93724 0.87115 0.87491 0.74754 0.89284 0.86820 0.78352 0.85634 0.87554 0.85947 0.86560 0.89239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.27 13.29 21.45 0.28 -55.98 16 2 C 0.00 0.10 5.46 84.65 0.46 0.56 16 3 Si 0.96 44.92 29.54 68.60 2.03 46.95 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 7 C -0.55 -31.78 9.11 25.60 0.23 -31.54 16 8 H 0.05 3.02 7.74 -2.91 -0.02 2.99 16 9 C 0.02 1.26 4.97 29.85 0.15 1.41 16 10 C -0.08 -3.52 4.44 30.59 0.14 -3.38 16 11 C -0.13 -3.96 5.70 29.85 0.17 -3.79 16 12 C 0.52 14.88 7.83 87.66 0.69 15.57 16 13 O -0.58 -21.16 15.98 -3.03 -0.05 -21.21 16 14 N -0.72 -13.94 5.55 -466.79 -2.59 -16.53 16 15 C 0.21 3.47 6.24 85.63 0.53 4.01 16 16 C -0.05 -0.74 6.86 25.04 0.17 -0.57 16 17 C -0.20 -2.78 10.40 22.40 0.23 -2.54 16 18 C 0.04 0.74 6.95 43.58 0.30 1.05 16 19 C -0.11 -1.39 6.33 -11.54 -0.07 -1.46 16 20 C -0.15 -1.12 10.05 30.62 0.31 -0.81 16 21 C -0.16 -1.67 10.24 30.62 0.31 -1.36 16 22 N -0.38 -8.67 12.07 -49.55 -0.60 -9.26 16 23 O 0.09 1.97 11.20 71.61 0.80 2.77 16 24 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 25 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 26 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 27 H 0.04 1.86 8.10 -2.39 -0.02 1.84 16 28 H 0.04 1.96 8.10 -2.39 -0.02 1.94 16 29 H 0.11 2.90 8.14 -2.38 -0.02 2.88 16 30 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 31 H 0.42 6.14 8.46 -92.71 -0.78 5.36 16 32 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.20 1.70 7.62 -2.91 -0.02 1.68 16 35 H 0.13 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.11 0.71 7.34 -2.39 -0.02 0.69 16 37 H 0.12 0.52 8.14 -2.39 -0.02 0.51 16 38 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -73.19 340.62 3.77 -69.41 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: 0.27 Total: 6.72 kcal Atomic # 6 Polarization: -26.49 SS G_CDS: 3.63 Total: -22.87 kcal Atomic # 7 Polarization: -78.87 SS G_CDS: -2.90 Total: -81.77 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: 0.75 Total: -18.44 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -73.19 3.77 -69.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894264025.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.809 kcal (2) G-P(sol) polarization free energy of solvation -73.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds