Wall clock time and date at job start Tue Mar 31 2020 00:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99622 * 2 1 4 4 H 1.48502 * 109.47344 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47110 * 299.99979 * 3 2 1 6 6 H 1.48498 * 109.47266 * 59.99473 * 3 2 1 7 7 C 1.37875 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99507 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00032 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.46708 * 179.97438 * 9 7 2 11 11 C 1.34781 * 119.99511 * 180.02562 * 10 9 7 12 12 O 1.21584 * 119.99970 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99489 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99622 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.47064 * 179.97438 * 14 13 11 16 16 C 1.38234 * 119.99770 * 269.72527 * 15 14 13 17 17 C 1.38239 * 119.99901 * 179.76875 * 16 15 14 18 18 C 1.38238 * 119.99492 * 0.48004 * 17 16 15 19 19 C 1.50706 * 119.99437 * 179.77082 * 18 17 16 20 20 C 1.53005 * 109.47127 * 270.02394 * 19 18 17 21 21 O 1.42895 * 109.46889 * 180.02562 * 20 19 18 22 22 C 1.38225 * 120.00505 * 359.79428 * 18 17 16 23 23 C 1.38232 * 119.99860 * 89.99969 * 15 14 13 24 24 H 0.96994 * 120.00630 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.46995 * 60.00309 * 9 7 2 26 26 H 1.08994 * 109.46942 * 300.00079 * 9 7 2 27 27 H 0.97003 * 120.00113 * 0.02562 * 10 9 7 28 28 H 0.96996 * 120.00772 * 359.97438 * 13 11 10 29 29 H 1.09002 * 109.47068 * 299.99729 * 14 13 11 30 30 H 1.09001 * 109.47372 * 59.99816 * 14 13 11 31 31 H 1.08001 * 120.00330 * 359.97438 * 16 15 14 32 32 H 1.07993 * 120.00120 * 180.25541 * 17 16 15 33 33 H 1.09002 * 109.47512 * 30.02407 * 19 18 17 34 34 H 1.09001 * 109.46797 * 150.02415 * 19 18 17 35 35 H 1.09002 * 109.46935 * 300.00366 * 20 19 18 36 36 H 1.09001 * 109.46812 * 60.00025 * 20 19 18 37 37 H 0.96704 * 114.00007 * 179.97438 * 21 20 19 38 38 H 1.07998 * 120.00220 * 179.97438 * 22 18 17 39 39 H 1.07998 * 120.00407 * 0.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2033 -3.6126 0.0015 11 6 1.7540 -4.8833 0.0019 12 8 0.5587 -5.1055 0.0029 13 7 2.6300 -5.9076 0.0022 14 6 2.1417 -7.2889 0.0020 15 6 3.3139 -8.2360 0.0018 16 6 3.8477 -8.6747 -1.1955 17 6 4.9260 -9.5398 -1.1958 18 6 5.4640 -9.9739 0.0013 19 6 6.6363 -10.9210 0.0010 20 6 6.1264 -12.3636 0.0009 21 8 7.2379 -13.2616 0.0012 22 6 4.9266 -9.5397 1.1985 23 6 3.8516 -8.6706 1.1988 24 1 -0.4851 0.8399 -0.0004 25 1 0.6242 -2.5575 -0.8880 26 1 0.6249 -2.5563 0.8919 27 1 3.1570 -3.4353 0.0010 28 1 3.5836 -5.7304 0.0017 29 1 1.5359 -7.4602 0.8918 30 1 1.5364 -7.4602 -0.8881 31 1 3.4245 -8.3390 -2.1307 32 1 5.3457 -9.8792 -2.1311 33 1 7.2417 -10.7496 -0.8890 34 1 7.2419 -10.7498 0.8910 35 1 5.5209 -12.5350 0.8909 36 1 5.5207 -12.5347 -0.8891 37 1 6.9887 -14.1960 0.0015 38 1 5.3467 -9.8792 2.1337 39 1 3.4314 -8.3317 2.1342 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894484075.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:34 Heat of formation + Delta-G solvation = -71.959526 kcal Electronic energy + Delta-G solvation = -20015.683045 eV Core-core repulsion = 16729.518393 eV Total energy + Delta-G solvation = -3286.164652 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.98214 -38.97984 -37.38332 -35.13865 -34.03629 -32.95216 -32.19085 -31.18190 -29.51903 -27.19873 -25.47294 -23.12070 -22.97960 -22.29973 -20.81415 -20.15074 -18.15587 -17.96683 -16.53584 -16.21892 -15.78022 -15.44951 -15.19510 -15.13665 -14.68138 -14.57045 -14.55928 -13.64950 -13.62409 -13.21145 -12.84431 -12.73129 -12.60819 -12.21841 -11.95000 -11.68384 -11.66327 -11.25196 -11.19847 -10.90725 -10.88975 -10.42131 -10.28698 -9.49625 -9.33191 -9.16090 -8.85299 -8.76831 -8.65867 -7.73111 -6.13586 -4.19917 0.95696 1.16806 3.22694 3.25310 3.32544 3.35817 3.68497 3.86675 3.97661 4.35199 4.46492 4.55222 4.71535 4.73412 4.80959 4.84541 5.06580 5.14087 5.18169 5.22495 5.23738 5.50140 5.55657 5.59307 5.71491 5.86864 5.89446 6.14439 6.32235 6.43652 6.73116 6.86178 7.14655 7.14965 7.54372 7.58196 7.59722 7.93377 8.06906 8.79165 8.97042 9.35717 9.50469 10.96719 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.039012 B = 0.002427 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.550797 B =11534.201490 C =11931.359697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.062 3.938 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.266 3.734 10 N -0.729 5.729 11 C 0.693 3.307 12 O -0.602 6.602 13 N -0.754 5.754 14 C 0.181 3.819 15 C -0.100 4.100 16 C -0.097 4.097 17 C -0.117 4.117 18 C -0.083 4.083 19 C -0.080 4.080 20 C 0.081 3.919 21 O -0.577 6.577 22 C -0.117 4.117 23 C -0.097 4.097 24 H 0.265 0.735 25 H 0.025 0.975 26 H 0.025 0.975 27 H 0.386 0.614 28 H 0.392 0.608 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.126 0.874 32 H 0.123 0.877 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.381 0.619 38 H 0.123 0.877 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.178 -24.088 -0.001 27.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.081 0.919 9 C 0.145 3.855 10 N -0.381 5.381 11 C 0.392 3.608 12 O -0.481 6.481 13 N -0.412 5.412 14 C 0.057 3.943 15 C -0.101 4.101 16 C -0.116 4.116 17 C -0.135 4.135 18 C -0.083 4.083 19 C -0.118 4.118 20 C 0.003 3.997 21 O -0.383 6.383 22 C -0.135 4.135 23 C -0.116 4.116 24 H 0.075 0.925 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.218 0.782 28 H 0.225 0.775 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.228 0.772 38 H 0.141 0.859 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 12.177 -23.545 0.001 26.508 hybrid contribution 0.922 0.591 -0.001 1.095 sum 13.099 -22.954 0.000 26.429 Atomic orbital electron populations 1.69989 1.06072 1.27131 1.49108 1.24954 0.94926 0.99417 0.94821 0.86356 0.79800 0.82985 0.77711 1.19677 1.20824 1.20829 1.21274 0.93312 0.90445 1.52883 0.91898 1.18984 0.87794 0.81085 0.97613 1.45721 1.10792 1.04396 1.77240 1.16154 0.85158 0.81050 0.78396 1.90872 1.14242 1.84237 1.58743 1.45186 1.08915 1.04576 1.82484 1.19909 0.92617 0.78942 1.02855 1.20029 0.97851 0.98780 0.93425 1.21145 0.95811 0.96746 0.97892 1.21049 0.96691 0.98246 0.97510 1.19699 0.96952 0.98214 0.93484 1.20462 0.95608 0.91508 1.04174 1.22156 0.88054 0.89324 1.00171 1.86453 1.34187 1.19865 1.97766 1.21047 0.96736 0.98206 0.97509 1.21145 0.95824 0.96722 0.97899 0.92536 0.95736 0.95732 0.78156 0.77482 0.91111 0.91126 0.85569 0.85926 0.90216 0.90219 0.93397 0.93390 0.77195 0.85928 0.85568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.29 55.43 0.74 -25.64 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.54 -14.90 9.28 -34.44 -0.32 -15.22 16 8 H 0.06 1.62 7.60 -52.48 -0.40 1.23 16 9 C 0.27 7.24 5.43 -5.19 -0.03 7.21 16 10 N -0.73 -15.93 5.55 -66.42 -0.37 -16.30 16 11 C 0.69 14.57 8.57 -86.92 -0.74 13.82 16 12 O -0.60 -15.28 16.34 5.29 0.09 -15.19 16 13 N -0.75 -11.54 5.55 -66.41 -0.37 -11.91 16 14 C 0.18 2.40 5.80 -5.19 -0.03 2.37 16 15 C -0.10 -1.06 5.25 -104.62 -0.55 -1.61 16 16 C -0.10 -0.94 9.70 -39.58 -0.38 -1.32 16 17 C -0.12 -1.00 9.70 -39.58 -0.38 -1.39 16 18 C -0.08 -0.69 5.13 -104.62 -0.54 -1.23 16 19 C -0.08 -0.58 5.71 -27.88 -0.16 -0.74 16 20 C 0.08 0.52 7.03 37.16 0.26 0.79 16 21 O -0.58 -4.07 13.66 -35.23 -0.48 -4.55 16 22 C -0.12 -1.00 9.70 -39.58 -0.38 -1.39 16 23 C -0.10 -0.94 9.70 -39.58 -0.38 -1.32 16 24 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 25 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.39 7.24 8.34 -40.82 -0.34 6.90 16 28 H 0.39 5.03 8.48 -40.82 -0.35 4.68 16 29 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 30 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 31 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 33 H 0.08 0.58 8.09 -51.93 -0.42 0.16 16 34 H 0.08 0.58 8.09 -51.93 -0.42 0.16 16 35 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 37 H 0.38 0.97 9.12 45.56 0.42 1.39 16 38 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 39 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 340.69 15.07 5.13 5.13 Total: -1.00 -34.63 340.69 -8.89 -43.52 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -4.87 Total: 7.28 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -3.74 Total: 1.62 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: 0.00 Total: -53.85 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.39 Total: -19.74 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.63 -8.89 -43.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894484075.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.443 kcal (2) G-P(sol) polarization free energy of solvation -34.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds