Wall clock time and date at job start Tue Mar 31 2020 00:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99622 * 2 1 4 4 H 1.48502 * 109.47344 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47110 * 299.99979 * 3 2 1 6 6 H 1.48498 * 109.47266 * 59.99473 * 3 2 1 7 7 C 1.37875 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99507 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00032 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.46708 * 179.97438 * 9 7 2 11 11 C 1.34781 * 119.99511 * 180.02562 * 10 9 7 12 12 O 1.21584 * 119.99970 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99489 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99622 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.47064 * 179.97438 * 14 13 11 16 16 C 1.38234 * 119.99770 * 269.72527 * 15 14 13 17 17 C 1.38239 * 119.99901 * 179.76875 * 16 15 14 18 18 C 1.38238 * 119.99492 * 0.48004 * 17 16 15 19 19 C 1.50706 * 119.99437 * 179.77082 * 18 17 16 20 20 C 1.53005 * 109.47127 * 270.02394 * 19 18 17 21 21 O 1.42895 * 109.46889 * 180.02562 * 20 19 18 22 22 C 1.38225 * 120.00505 * 359.79428 * 18 17 16 23 23 C 1.38232 * 119.99860 * 89.99969 * 15 14 13 24 24 H 0.96994 * 120.00630 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.46995 * 60.00309 * 9 7 2 26 26 H 1.08994 * 109.46942 * 300.00079 * 9 7 2 27 27 H 0.97003 * 120.00113 * 0.02562 * 10 9 7 28 28 H 0.96996 * 120.00772 * 359.97438 * 13 11 10 29 29 H 1.09002 * 109.47068 * 299.99729 * 14 13 11 30 30 H 1.09001 * 109.47372 * 59.99816 * 14 13 11 31 31 H 1.08001 * 120.00330 * 359.97438 * 16 15 14 32 32 H 1.07993 * 120.00120 * 180.25541 * 17 16 15 33 33 H 1.09002 * 109.47512 * 30.02407 * 19 18 17 34 34 H 1.09001 * 109.46797 * 150.02415 * 19 18 17 35 35 H 1.09002 * 109.46935 * 300.00366 * 20 19 18 36 36 H 1.09001 * 109.46812 * 60.00025 * 20 19 18 37 37 H 0.96704 * 114.00007 * 179.97438 * 21 20 19 38 38 H 1.07998 * 120.00220 * 179.97438 * 22 18 17 39 39 H 1.07998 * 120.00407 * 0.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2033 -3.6126 0.0015 11 6 1.7540 -4.8833 0.0019 12 8 0.5587 -5.1055 0.0029 13 7 2.6300 -5.9076 0.0022 14 6 2.1417 -7.2889 0.0020 15 6 3.3139 -8.2360 0.0018 16 6 3.8477 -8.6747 -1.1955 17 6 4.9260 -9.5398 -1.1958 18 6 5.4640 -9.9739 0.0013 19 6 6.6363 -10.9210 0.0010 20 6 6.1264 -12.3636 0.0009 21 8 7.2379 -13.2616 0.0012 22 6 4.9266 -9.5397 1.1985 23 6 3.8516 -8.6706 1.1988 24 1 -0.4851 0.8399 -0.0004 25 1 0.6242 -2.5575 -0.8880 26 1 0.6249 -2.5563 0.8919 27 1 3.1570 -3.4353 0.0010 28 1 3.5836 -5.7304 0.0017 29 1 1.5359 -7.4602 0.8918 30 1 1.5364 -7.4602 -0.8881 31 1 3.4245 -8.3390 -2.1307 32 1 5.3457 -9.8792 -2.1311 33 1 7.2417 -10.7496 -0.8890 34 1 7.2419 -10.7498 0.8910 35 1 5.5209 -12.5350 0.8909 36 1 5.5207 -12.5347 -0.8891 37 1 6.9887 -14.1960 0.0015 38 1 5.3467 -9.8792 2.1337 39 1 3.4314 -8.3317 2.1342 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894484075.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:33 Heat of formation + Delta-G solvation = -98.710370 kcal Electronic energy + Delta-G solvation = -20016.843049 eV Core-core repulsion = 16729.518393 eV Total energy + Delta-G solvation = -3287.324655 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.06771 -40.31870 -37.92793 -36.45293 -35.87704 -34.42458 -33.73053 -31.87922 -30.52316 -29.00872 -26.57059 -24.58925 -23.67947 -23.52620 -21.88264 -21.54419 -19.86760 -18.48205 -18.15766 -17.50901 -16.98799 -16.62361 -16.36959 -16.36300 -15.90067 -15.58473 -15.23319 -15.07160 -14.93750 -14.43082 -14.23302 -14.04230 -13.59505 -13.52483 -13.36802 -12.86450 -12.79314 -12.72811 -12.22508 -12.21115 -12.02712 -11.88934 -11.44217 -11.30563 -10.88588 -10.81274 -10.29424 -9.85745 -9.63875 -9.58848 -8.27933 -6.44239 0.19864 0.46932 1.43956 1.45453 1.58759 1.94668 2.24082 2.39958 2.78740 3.06937 3.34305 3.61531 3.69507 3.83850 4.09760 4.10216 4.16116 4.36386 4.39739 4.52342 4.57471 4.68255 4.72014 4.94532 4.98725 5.09168 5.14112 5.16763 5.28019 5.42835 5.47858 5.50717 5.64507 5.66760 5.68080 5.85799 6.03438 6.25884 6.67765 6.88031 7.24800 7.30587 7.71666 8.84626 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.039012 B = 0.002427 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.550797 B =11534.201490 C =11931.359697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.987 3.013 4 H -0.254 1.254 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.554 4.554 8 H 0.083 0.917 9 C 0.285 3.715 10 N -0.724 5.724 11 C 0.692 3.308 12 O -0.649 6.649 13 N -0.728 5.728 14 C 0.182 3.818 15 C -0.110 4.110 16 C -0.102 4.102 17 C -0.118 4.118 18 C -0.078 4.078 19 C -0.079 4.079 20 C 0.082 3.918 21 O -0.596 6.596 22 C -0.119 4.119 23 C -0.102 4.102 24 H 0.269 0.731 25 H -0.014 1.014 26 H -0.014 1.014 27 H 0.404 0.596 28 H 0.408 0.592 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.130 0.870 32 H 0.141 0.859 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.399 0.601 38 H 0.141 0.859 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.978 -24.656 -0.003 29.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.197 4.197 3 Si 0.810 3.190 4 H -0.177 1.177 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.592 4.592 8 H 0.101 0.899 9 C 0.161 3.839 10 N -0.377 5.377 11 C 0.391 3.609 12 O -0.532 6.532 13 N -0.385 5.385 14 C 0.059 3.941 15 C -0.111 4.111 16 C -0.121 4.121 17 C -0.136 4.136 18 C -0.078 4.078 19 C -0.117 4.117 20 C 0.004 3.996 21 O -0.405 6.405 22 C -0.136 4.136 23 C -0.121 4.121 24 H 0.078 0.922 25 H 0.004 0.996 26 H 0.004 0.996 27 H 0.240 0.760 28 H 0.244 0.756 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.148 0.852 32 H 0.158 0.842 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.249 0.751 38 H 0.158 0.842 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 15.055 -24.185 -0.001 28.487 hybrid contribution 0.072 0.602 0.000 0.607 sum 15.127 -23.582 -0.001 28.017 Atomic orbital electron populations 1.70147 1.08242 1.28506 1.50014 1.26080 0.95820 1.03901 0.93922 0.85080 0.79011 0.77222 0.77678 1.17705 1.20424 1.20437 1.21634 0.94310 0.90477 1.52766 0.89860 1.18422 0.88109 0.83323 0.94012 1.45315 1.10903 1.03827 1.77671 1.16308 0.85065 0.81567 0.77933 1.90838 1.16684 1.84951 1.60701 1.44984 1.08972 1.04221 1.80367 1.19972 0.93933 0.78022 1.02188 1.19757 0.97618 0.99270 0.94434 1.21238 0.96168 0.97010 0.97654 1.21258 0.96173 0.97697 0.98504 1.19879 0.96839 0.97758 0.93318 1.20461 0.95081 0.91841 1.04281 1.22133 0.87939 0.88806 1.00727 1.86401 1.34824 1.21433 1.97798 1.21256 0.96221 0.97655 0.98502 1.21237 0.96178 0.96992 0.97660 0.92233 0.99595 0.99589 0.76044 0.75563 0.91826 0.91835 0.85210 0.84151 0.90133 0.90137 0.92848 0.92839 0.75105 0.84154 0.85213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.67 13.29 21.45 0.28 -56.39 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.99 42.69 29.54 68.60 2.03 44.72 16 4 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 6 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.55 -30.60 9.28 25.60 0.24 -30.36 16 8 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 9 C 0.28 16.06 5.43 85.63 0.46 16.53 16 10 N -0.72 -31.99 5.55 -482.30 -2.68 -34.67 16 11 C 0.69 29.59 8.57 179.05 1.53 31.13 16 12 O -0.65 -34.25 16.34 -3.98 -0.07 -34.31 16 13 N -0.73 -21.96 5.55 -482.29 -2.68 -24.64 16 14 C 0.18 4.81 5.80 85.63 0.50 5.31 16 15 C -0.11 -2.21 5.25 -19.87 -0.10 -2.32 16 16 C -0.10 -1.82 9.70 22.27 0.22 -1.60 16 17 C -0.12 -1.76 9.70 22.27 0.22 -1.55 16 18 C -0.08 -1.11 5.13 -19.87 -0.10 -1.21 16 19 C -0.08 -0.96 5.71 29.85 0.17 -0.79 16 20 C 0.08 0.87 7.03 71.98 0.51 1.38 16 21 O -0.60 -7.15 13.66 -148.98 -2.03 -9.18 16 22 C -0.12 -1.77 9.70 22.27 0.22 -1.55 16 23 C -0.10 -1.82 9.70 22.27 0.22 -1.60 16 24 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 25 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 26 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 27 H 0.40 14.78 8.34 -92.71 -0.77 14.01 16 28 H 0.41 9.86 8.48 -92.71 -0.79 9.07 16 29 H 0.06 1.79 8.09 -2.39 -0.02 1.77 16 30 H 0.06 1.78 8.08 -2.39 -0.02 1.76 16 31 H 0.13 2.16 8.06 -2.91 -0.02 2.14 16 32 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 33 H 0.08 0.98 8.09 -2.39 -0.02 0.96 16 34 H 0.08 0.98 8.09 -2.39 -0.02 0.96 16 35 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.40 1.23 9.12 -74.05 -0.68 0.56 16 38 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 39 H 0.13 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -76.22 340.69 -1.77 -77.99 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: -1.15 Total: 22.53 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: 4.53 Total: 13.95 kcal Atomic # 7 Polarization: -110.62 SS G_CDS: -5.07 Total: -115.70 kcal Atomic # 8 Polarization: -41.39 SS G_CDS: -2.10 Total: -43.49 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -76.22 -1.77 -77.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894484075.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.723 kcal (2) G-P(sol) polarization free energy of solvation -76.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds