Wall clock time and date at job start Tue Mar 31 2020 00:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86798 * 120.00192 * 2 1 4 4 H 1.48496 * 109.47491 * 240.00497 * 3 2 1 5 5 H 1.48506 * 109.47103 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47085 * 119.99991 * 3 2 1 7 7 C 1.38815 * 120.00448 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00510 * 197.01897 * 7 2 1 9 9 N 1.36945 * 119.99570 * 17.02052 * 7 2 1 10 10 C 1.46965 * 120.59131 * 208.63609 * 9 7 2 11 11 C 1.53377 * 108.63228 * 235.20212 * 10 9 7 12 12 N 1.46967 * 108.63220 * 310.57760 * 11 10 9 13 13 C 1.34776 * 120.58878 * 235.20260 * 12 11 10 14 14 O 1.21282 * 120.00215 * 0.02562 * 13 12 11 15 15 C 1.50702 * 119.99761 * 179.97438 * 13 12 11 16 16 H 1.08994 * 115.53300 * 286.81830 * 15 13 12 17 17 C 1.53053 * 117.45817 * 141.32655 * 15 13 12 18 18 H 1.08994 * 119.43295 * 139.62354 * 17 15 13 19 19 C 1.54420 * 117.96092 * 345.44542 * 17 15 13 20 20 C 1.54911 * 103.66297 * 319.32922 * 19 17 15 21 21 C 1.52486 * 102.93821 * 322.18057 * 20 19 17 22 22 O 1.20765 * 127.57473 * 218.29753 * 21 20 19 23 23 C 1.51829 * 104.84818 * 38.55634 * 21 20 19 24 24 H 1.08999 * 117.26034 * 196.26300 * 23 21 20 25 25 C 1.46965 * 118.81489 * 55.47685 * 12 11 10 26 26 C 1.46959 * 120.59480 * 28.60940 * 9 7 2 27 27 H 0.97002 * 120.00701 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.61262 * 115.45860 * 10 9 7 29 29 H 1.09000 * 109.75102 * 355.02803 * 10 9 7 30 30 H 1.08995 * 109.60788 * 190.83174 * 11 10 9 31 31 H 1.09004 * 109.60771 * 70.31763 * 11 10 9 32 32 H 1.09001 * 110.58456 * 200.78509 * 19 17 15 33 33 H 1.08996 * 110.72120 * 77.93587 * 19 17 15 34 34 H 1.09000 * 110.71981 * 203.82354 * 20 19 17 35 35 H 1.08996 * 110.72542 * 80.54171 * 20 19 17 36 36 H 1.08999 * 109.61054 * 64.26440 * 25 12 11 37 37 H 1.09001 * 109.60678 * 184.77862 * 25 12 11 38 38 H 1.09004 * 109.60921 * 244.53794 * 26 9 7 39 39 H 1.09003 * 109.61319 * 4.87760 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0548 -1.2227 0.2732 9 7 1.3705 -2.3620 -0.3482 10 6 1.8080 -3.6518 0.2038 11 6 2.1078 -4.6061 -0.9589 12 7 0.9712 -4.5831 -1.8903 13 6 0.3416 -5.7246 -2.2324 14 8 0.7116 -6.7832 -1.7704 15 6 -0.8229 -5.6855 -3.1882 16 1 -1.7504 -5.2819 -2.7823 17 6 -0.9343 -6.8181 -4.2115 18 1 -1.9129 -7.2413 -4.4377 19 6 0.3007 -7.7184 -4.4324 20 6 1.4876 -6.7231 -4.4116 21 6 0.9227 -5.5031 -5.1312 22 8 1.4954 -4.7739 -5.9048 23 6 -0.5159 -5.4029 -4.6563 24 1 -1.1908 -4.7743 -5.2374 25 6 0.5372 -3.2939 -2.4466 26 6 0.2340 -2.3390 -1.2795 27 1 -0.4851 0.8400 0.0004 28 1 1.0172 -4.0706 0.8261 29 1 2.7080 -3.5102 0.8022 30 1 2.2466 -5.6171 -0.5759 31 1 3.0108 -4.2808 -1.4756 32 1 0.2400 -8.2224 -5.3970 33 1 0.3966 -8.4460 -3.6265 34 1 2.3413 -7.1296 -4.9538 35 1 1.7634 -6.4731 -3.3872 36 1 1.3309 -2.8773 -3.0667 37 1 -0.3615 -3.4382 -3.0463 38 1 -0.6690 -2.6644 -0.7628 39 1 0.0932 -1.3274 -1.6602 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906757761.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:52 Heat of formation + Delta-G solvation = 2.931771 kcal Electronic energy + Delta-G solvation = -22770.670926 eV Core-core repulsion = 19487.753805 eV Total energy + Delta-G solvation = -3282.917121 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.47422 -38.94656 -37.48588 -36.50161 -33.93732 -31.75943 -31.07657 -30.17838 -27.25973 -26.57498 -24.99986 -23.40442 -22.82056 -21.14079 -19.99489 -19.45827 -18.39293 -17.55026 -16.48392 -16.10023 -15.89053 -15.36546 -14.80433 -14.69028 -14.37810 -13.97492 -13.71871 -13.51196 -13.38333 -13.26183 -13.09624 -12.50648 -12.40043 -11.74700 -11.61624 -11.37612 -11.18134 -10.86047 -10.79241 -10.69150 -10.55009 -10.33006 -10.27215 -10.08139 -9.89113 -9.70128 -9.25112 -8.63446 -8.34087 -6.75546 -5.89217 -3.34015 1.68468 2.73009 3.16656 3.33856 3.39787 3.41356 3.50619 3.92777 4.24156 4.30844 4.41980 4.55583 4.83879 4.88406 5.10764 5.22751 5.24227 5.30860 5.39132 5.57390 5.71224 5.73649 5.76956 5.80769 5.88099 5.94138 5.99567 6.09151 6.14413 6.28088 6.36749 6.72062 6.84672 7.14371 7.40091 7.40804 7.68380 7.77931 8.32530 8.37546 9.08431 9.70811 10.27458 11.18716 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027707 B = 0.005111 C = 0.004850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.336800 B = 5476.818600 C = 5772.313363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.005 3.995 3 Si 0.905 3.095 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.258 4.258 8 H 0.067 0.933 9 N -0.590 5.590 10 C 0.133 3.867 11 C 0.092 3.908 12 N -0.590 5.590 13 C 0.536 3.464 14 O -0.550 6.550 15 C -0.123 4.123 16 H 0.147 0.853 17 C -0.109 4.109 18 H 0.133 0.867 19 C -0.088 4.088 20 C -0.208 4.208 21 C 0.395 3.605 22 O -0.433 6.433 23 C -0.226 4.226 24 H 0.134 0.866 25 C 0.079 3.921 26 C 0.159 3.841 27 H 0.256 0.744 28 H 0.024 0.976 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.128 0.872 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.024 0.976 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.477 -12.590 -8.276 15.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.194 4.194 3 Si 0.734 3.266 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.387 4.387 8 H 0.085 0.915 9 N -0.313 5.313 10 C 0.006 3.994 11 C -0.032 4.032 12 N -0.321 5.321 13 C 0.324 3.676 14 O -0.431 6.431 15 C -0.144 4.144 16 H 0.164 0.836 17 C -0.127 4.127 18 H 0.151 0.849 19 C -0.125 4.125 20 C -0.245 4.245 21 C 0.269 3.731 22 O -0.305 6.305 23 C -0.245 4.245 24 H 0.152 0.848 25 C -0.045 4.045 26 C 0.032 3.968 27 H 0.066 0.934 28 H 0.042 0.958 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.146 0.854 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.043 0.957 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.062 -12.557 -8.428 15.263 hybrid contribution 0.155 1.119 0.012 1.130 sum -1.907 -11.438 -8.416 14.328 Atomic orbital electron populations 1.69987 1.05323 1.25897 1.53469 1.25067 0.95305 0.98556 1.00441 0.86338 0.78945 0.83061 0.78245 1.20896 1.21550 1.20785 1.19162 0.92662 0.84631 1.42227 0.91510 1.43968 1.36447 1.01722 1.49171 1.21279 0.98542 0.87009 0.92617 1.22294 0.87553 1.01270 0.92063 1.48155 1.32361 1.07012 1.44601 1.19516 0.82920 0.83833 0.81351 1.90658 1.66546 1.29700 1.56173 1.22202 1.00409 1.03316 0.88447 0.83580 1.23235 1.00806 0.88744 0.99945 0.84936 1.21879 0.90684 0.97162 1.02772 1.23617 1.00093 0.96211 1.04613 1.24404 0.87490 0.83538 0.77652 1.90415 1.66335 1.44688 1.29023 1.23842 0.99350 1.03182 0.98138 0.84772 1.22825 0.99376 0.83723 0.98599 1.21258 0.89240 0.98525 0.87786 0.93388 0.95781 0.91438 0.89784 0.91800 0.90286 0.88846 0.89169 0.85441 0.91764 0.90802 0.95743 0.88133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.18 11.20 55.49 0.62 -24.56 16 2 C 0.01 0.14 4.91 -17.43 -0.09 0.05 16 3 Si 0.90 21.10 29.59 -169.99 -5.03 16.07 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.26 -6.81 9.58 -15.05 -0.14 -6.95 16 8 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 9 N -0.59 -14.19 2.97 -171.76 -0.51 -14.70 16 10 C 0.13 2.71 6.67 -3.59 -0.02 2.68 16 11 C 0.09 1.63 6.59 -3.59 -0.02 1.61 16 12 N -0.59 -10.23 2.94 -172.21 -0.51 -10.73 16 13 C 0.54 8.50 4.38 -10.98 -0.05 8.45 16 14 O -0.55 -9.65 13.68 5.56 0.08 -9.57 16 15 C -0.12 -1.51 4.45 -91.93 -0.41 -1.92 16 16 H 0.15 1.55 8.14 -51.93 -0.42 1.13 16 17 C -0.11 -1.08 7.05 -89.25 -0.63 -1.71 16 18 H 0.13 0.95 8.14 -51.93 -0.42 0.53 16 19 C -0.09 -0.91 6.05 -24.98 -0.15 -1.06 16 20 C -0.21 -2.66 6.08 -25.99 -0.16 -2.82 16 21 C 0.39 5.58 7.57 -27.59 -0.21 5.37 16 22 O -0.43 -7.45 17.99 5.99 0.11 -7.35 16 23 C -0.23 -2.62 5.99 -90.81 -0.54 -3.17 16 24 H 0.13 1.35 8.14 -51.93 -0.42 0.93 16 25 C 0.08 1.42 6.37 -3.37 -0.02 1.40 16 26 C 0.16 3.55 5.53 -3.37 -0.02 3.53 16 27 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 1.32 7.94 -51.93 -0.41 0.91 16 30 H 0.08 1.42 6.99 -51.93 -0.36 1.05 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 1.02 7.68 -51.93 -0.40 0.62 16 34 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.13 1.92 4.27 -51.93 -0.22 1.70 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.07 1.14 5.73 -51.93 -0.30 0.84 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.10 2.51 6.00 -51.93 -0.31 2.19 16 LS Contribution 308.99 15.07 4.66 4.66 Total: -1.00 -30.56 308.99 -8.41 -38.97 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -5.36 Total: 1.75 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: -2.47 Total: 5.48 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: -0.39 Total: -50.00 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: 0.18 Total: -16.92 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.56 -8.41 -38.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906757761.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.898 kcal (2) G-P(sol) polarization free energy of solvation -30.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds