Wall clock time and date at job start Tue Mar 31 2020 00:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86798 * 120.00192 * 2 1 4 4 H 1.48496 * 109.47491 * 240.00497 * 3 2 1 5 5 H 1.48506 * 109.47103 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47085 * 119.99991 * 3 2 1 7 7 C 1.38815 * 120.00448 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00510 * 197.01897 * 7 2 1 9 9 N 1.36945 * 119.99570 * 17.02052 * 7 2 1 10 10 C 1.46965 * 120.59131 * 208.63609 * 9 7 2 11 11 C 1.53377 * 108.63228 * 235.20212 * 10 9 7 12 12 N 1.46967 * 108.63220 * 310.57760 * 11 10 9 13 13 C 1.34776 * 120.58878 * 235.20260 * 12 11 10 14 14 O 1.21282 * 120.00215 * 0.02562 * 13 12 11 15 15 C 1.50702 * 119.99761 * 179.97438 * 13 12 11 16 16 H 1.08994 * 115.53300 * 286.81830 * 15 13 12 17 17 C 1.53053 * 117.45817 * 141.32655 * 15 13 12 18 18 H 1.08994 * 119.43295 * 139.62354 * 17 15 13 19 19 C 1.54420 * 117.96092 * 345.44542 * 17 15 13 20 20 C 1.54911 * 103.66297 * 319.32922 * 19 17 15 21 21 C 1.52486 * 102.93821 * 322.18057 * 20 19 17 22 22 O 1.20765 * 127.57473 * 218.29753 * 21 20 19 23 23 C 1.51829 * 104.84818 * 38.55634 * 21 20 19 24 24 H 1.08999 * 117.26034 * 196.26300 * 23 21 20 25 25 C 1.46965 * 118.81489 * 55.47685 * 12 11 10 26 26 C 1.46959 * 120.59480 * 28.60940 * 9 7 2 27 27 H 0.97002 * 120.00701 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.61262 * 115.45860 * 10 9 7 29 29 H 1.09000 * 109.75102 * 355.02803 * 10 9 7 30 30 H 1.08995 * 109.60788 * 190.83174 * 11 10 9 31 31 H 1.09004 * 109.60771 * 70.31763 * 11 10 9 32 32 H 1.09001 * 110.58456 * 200.78509 * 19 17 15 33 33 H 1.08996 * 110.72120 * 77.93587 * 19 17 15 34 34 H 1.09000 * 110.71981 * 203.82354 * 20 19 17 35 35 H 1.08996 * 110.72542 * 80.54171 * 20 19 17 36 36 H 1.08999 * 109.61054 * 64.26440 * 25 12 11 37 37 H 1.09001 * 109.60678 * 184.77862 * 25 12 11 38 38 H 1.09004 * 109.60921 * 244.53794 * 26 9 7 39 39 H 1.09003 * 109.61319 * 4.87760 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0548 -1.2227 0.2732 9 7 1.3705 -2.3620 -0.3482 10 6 1.8080 -3.6518 0.2038 11 6 2.1078 -4.6061 -0.9589 12 7 0.9712 -4.5831 -1.8903 13 6 0.3416 -5.7246 -2.2324 14 8 0.7116 -6.7832 -1.7704 15 6 -0.8229 -5.6855 -3.1882 16 1 -1.7504 -5.2819 -2.7823 17 6 -0.9343 -6.8181 -4.2115 18 1 -1.9129 -7.2413 -4.4377 19 6 0.3007 -7.7184 -4.4324 20 6 1.4876 -6.7231 -4.4116 21 6 0.9227 -5.5031 -5.1312 22 8 1.4954 -4.7739 -5.9048 23 6 -0.5159 -5.4029 -4.6563 24 1 -1.1908 -4.7743 -5.2374 25 6 0.5372 -3.2939 -2.4466 26 6 0.2340 -2.3390 -1.2795 27 1 -0.4851 0.8400 0.0004 28 1 1.0172 -4.0706 0.8261 29 1 2.7080 -3.5102 0.8022 30 1 2.2466 -5.6171 -0.5759 31 1 3.0108 -4.2808 -1.4756 32 1 0.2400 -8.2224 -5.3970 33 1 0.3966 -8.4460 -3.6265 34 1 2.3413 -7.1296 -4.9538 35 1 1.7634 -6.4731 -3.3872 36 1 1.3309 -2.8773 -3.0667 37 1 -0.3615 -3.4382 -3.0463 38 1 -0.6690 -2.6644 -0.7628 39 1 0.0932 -1.3274 -1.6602 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906757761.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:52 Heat of formation + Delta-G solvation = -15.561126 kcal Electronic energy + Delta-G solvation = -22771.472839 eV Core-core repulsion = 19487.753805 eV Total energy + Delta-G solvation = -3283.719034 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.55547 -40.23168 -38.83144 -37.83676 -35.63412 -33.34254 -32.34809 -31.77152 -28.91491 -27.52054 -26.39979 -25.03551 -24.35001 -22.45583 -21.22297 -20.56110 -19.80141 -18.84797 -17.96345 -17.46306 -17.13516 -16.69264 -16.50334 -15.90039 -15.57205 -15.48510 -15.30732 -15.07909 -15.00094 -14.49084 -14.31460 -13.81620 -13.40300 -13.29257 -13.20677 -12.67072 -12.59453 -12.50243 -12.27939 -12.20162 -12.04457 -11.93571 -11.70020 -11.58482 -11.19249 -10.92044 -10.61015 -10.36998 -9.87118 -8.67481 -7.90936 -5.38934 0.61869 1.46817 1.49327 1.50958 1.56143 1.92160 2.49426 2.56010 2.94651 3.24024 3.29239 3.36293 3.51521 3.59871 3.84304 4.04545 4.17557 4.19447 4.22228 4.31955 4.36162 4.51721 4.55617 4.59424 4.71383 4.74237 4.78135 4.88957 4.97219 5.03933 5.08722 5.18058 5.20543 5.48615 5.57721 5.62943 6.33859 6.34056 6.41831 7.07669 7.09586 7.76873 8.29844 9.14223 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027707 B = 0.005111 C = 0.004850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.336800 B = 5476.818600 C = 5772.313363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.042 4.042 3 Si 0.966 3.034 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.269 4.269 8 H 0.067 0.933 9 N -0.609 5.609 10 C 0.133 3.867 11 C 0.103 3.897 12 N -0.600 5.600 13 C 0.536 3.464 14 O -0.566 6.566 15 C -0.139 4.139 16 H 0.169 0.831 17 C -0.081 4.081 18 H 0.174 0.826 19 C -0.086 4.086 20 C -0.213 4.213 21 C 0.390 3.610 22 O -0.473 6.473 23 C -0.229 4.229 24 H 0.154 0.846 25 C 0.100 3.900 26 C 0.165 3.835 27 H 0.253 0.747 28 H 0.015 0.985 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.052 0.948 37 H 0.104 0.896 38 H 0.008 0.992 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.320 -13.985 -9.391 17.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.238 4.238 3 Si 0.794 3.206 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.202 1.202 7 C -0.399 4.399 8 H 0.085 0.915 9 N -0.332 5.332 10 C 0.007 3.993 11 C -0.021 4.021 12 N -0.331 5.331 13 C 0.326 3.674 14 O -0.447 6.447 15 C -0.159 4.159 16 H 0.186 0.814 17 C -0.099 4.099 18 H 0.191 0.809 19 C -0.123 4.123 20 C -0.251 4.251 21 C 0.267 3.733 22 O -0.347 6.347 23 C -0.248 4.248 24 H 0.172 0.828 25 C -0.024 4.024 26 C 0.039 3.961 27 H 0.062 0.938 28 H 0.033 0.967 29 H 0.090 0.910 30 H 0.113 0.887 31 H 0.081 0.919 32 H 0.125 0.875 33 H 0.108 0.892 34 H 0.113 0.887 35 H 0.123 0.877 36 H 0.070 0.930 37 H 0.122 0.878 38 H 0.026 0.974 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.905 -14.001 -9.538 17.188 hybrid contribution 0.464 1.449 0.413 1.576 sum -2.441 -12.552 -9.125 15.709 Atomic orbital electron populations 1.70123 1.06529 1.26202 1.54765 1.25755 0.96028 1.01335 1.00728 0.85371 0.77653 0.79315 0.78256 1.20579 1.21822 1.20233 1.19463 0.92922 0.85816 1.41676 0.91545 1.44222 1.36683 1.02298 1.50021 1.21347 0.98230 0.86101 0.93648 1.22063 0.87969 1.00843 0.91253 1.48186 1.32635 1.07317 1.44978 1.20130 0.83179 0.82826 0.81270 1.90647 1.67129 1.30061 1.56881 1.22336 0.99444 1.06253 0.87886 0.81368 1.23537 1.02347 0.87445 0.96532 0.80886 1.21975 0.89589 0.96537 1.04224 1.23633 1.01701 0.96718 1.03030 1.24856 0.88710 0.83105 0.76656 1.90399 1.67492 1.45910 1.30925 1.23827 0.98031 1.05420 0.97539 0.82802 1.22462 1.00198 0.83129 0.96609 1.21076 0.88304 0.98072 0.88698 0.93806 0.96727 0.91007 0.88718 0.91864 0.87463 0.89225 0.88655 0.87654 0.93005 0.87795 0.97420 0.90967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.98 11.20 21.65 0.24 -52.73 16 2 C -0.04 -2.30 4.91 84.86 0.42 -1.88 16 3 Si 0.97 43.82 29.59 68.60 2.03 45.85 16 4 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 6 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.27 -14.41 9.58 84.03 0.80 -13.61 16 8 H 0.07 3.48 7.89 -2.91 -0.02 3.46 16 9 N -0.61 -29.76 2.97 -697.34 -2.07 -31.83 16 10 C 0.13 5.48 6.67 86.42 0.58 6.06 16 11 C 0.10 3.62 6.59 86.42 0.57 4.19 16 12 N -0.60 -20.33 2.94 -817.14 -2.40 -22.73 16 13 C 0.54 16.07 4.38 87.66 0.38 16.46 16 14 O -0.57 -18.94 13.68 -3.04 -0.04 -18.98 16 15 C -0.14 -2.96 4.45 -11.64 -0.05 -3.01 16 16 H 0.17 2.91 8.14 -2.39 -0.02 2.89 16 17 C -0.08 -1.25 7.05 -9.91 -0.07 -1.32 16 18 H 0.17 1.39 8.14 -2.39 -0.02 1.37 16 19 C -0.09 -1.48 6.05 31.73 0.19 -1.29 16 20 C -0.21 -5.10 6.08 31.08 0.19 -4.91 16 21 C 0.39 10.38 7.57 30.04 0.23 10.61 16 22 O -0.47 -16.04 17.99 -1.46 -0.03 -16.06 16 23 C -0.23 -4.58 5.99 -10.92 -0.07 -4.64 16 24 H 0.15 2.51 8.14 -2.39 -0.02 2.49 16 25 C 0.10 3.57 6.37 86.56 0.55 4.12 16 26 C 0.16 7.51 5.53 86.56 0.48 7.99 16 27 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 28 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.07 2.83 7.94 -2.39 -0.02 2.81 16 30 H 0.09 3.14 6.99 -2.39 -0.02 3.12 16 31 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.09 1.68 7.68 -2.39 -0.02 1.66 16 34 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.11 3.07 4.27 -2.39 -0.01 3.06 16 36 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.10 3.05 5.73 -2.39 -0.01 3.03 16 38 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.07 3.70 6.00 -2.39 -0.01 3.69 16 Total: -1.00 -67.24 308.99 3.00 -64.25 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 1.06 Total: 13.47 kcal Atomic # 6 Polarization: 14.57 SS G_CDS: 4.20 Total: 18.77 kcal Atomic # 7 Polarization: -103.06 SS G_CDS: -4.23 Total: -107.29 kcal Atomic # 8 Polarization: -34.97 SS G_CDS: -0.07 Total: -35.04 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -67.24 3.00 -64.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906757761.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.687 kcal (2) G-P(sol) polarization free energy of solvation -67.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds