Wall clock time and date at job start Mon Mar 30 2020 23:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47805 * 2 1 4 4 C 1.50705 * 109.47077 * 240.00048 * 2 1 3 5 5 H 1.08007 * 119.99570 * 240.00329 * 4 2 1 6 6 C 1.37868 * 120.00264 * 60.00047 * 4 2 1 7 7 N 1.31514 * 119.99825 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00445 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46660 * 60.00076 * 8 6 4 10 10 H 1.48499 * 109.47422 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47019 * 300.00591 * 8 6 4 12 12 N 1.46900 * 109.47040 * 120.00084 * 2 1 3 13 13 C 1.46906 * 111.00152 * 58.95221 * 12 2 1 14 14 C 1.38256 * 111.00313 * 294.99736 * 12 2 1 15 15 N 1.31526 * 126.36197 * 71.15004 * 14 12 2 16 16 N 1.28523 * 110.05287 * 180.02562 * 15 14 12 17 17 C 1.31262 * 109.90548 * 0.02562 * 16 15 14 18 18 C 1.47859 * 126.45926 * 179.97438 * 17 16 15 19 19 N 1.35367 * 126.44544 * 359.97438 * 18 17 16 20 20 C 1.30929 * 105.58037 * 179.97438 * 19 18 17 21 21 O 1.33685 * 107.18126 * 0.02562 * 20 19 18 22 22 N 1.21287 * 110.07254 * 359.70585 * 21 20 19 23 23 N 1.36296 * 126.36516 * 251.18496 * 14 12 2 24 24 C 1.46494 * 127.15314 * 359.96775 * 23 14 12 25 25 H 1.09000 * 109.47151 * 300.00670 * 1 2 3 26 26 H 1.09008 * 109.46739 * 59.99521 * 1 2 3 27 27 H 1.08995 * 109.47805 * 180.02562 * 1 2 3 28 28 H 0.97004 * 120.00101 * 180.02562 * 7 6 4 29 29 H 1.08996 * 109.46819 * 297.43321 * 13 12 2 30 30 H 1.09002 * 109.46913 * 57.42838 * 13 12 2 31 31 H 1.08993 * 109.47230 * 177.43331 * 13 12 2 32 32 H 1.08001 * 126.41291 * 179.97438 * 20 19 18 33 33 H 1.09010 * 109.46879 * 95.60810 * 24 23 14 34 34 H 1.08996 * 109.47433 * 215.60131 * 24 23 14 35 35 H 1.09000 * 109.47475 * 335.61302 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3213 -1.1204 -4.0080 9 1 1.8257 -2.5203 -4.0077 10 1 1.8270 -0.4199 -5.2205 11 1 3.8063 -1.1211 -4.0081 12 7 2.0196 -0.6925 1.1994 13 6 1.5282 -2.0762 1.2460 14 6 1.6706 -0.0040 2.3464 15 7 0.4618 0.1044 2.8534 16 7 0.4951 0.8146 3.9241 17 6 1.7257 1.2027 4.1649 18 6 2.1784 2.0345 5.3004 19 7 1.4016 2.5396 6.2873 20 6 2.2144 3.2048 7.0690 21 8 3.4414 3.0921 6.5505 22 7 3.4075 2.4166 5.5437 23 7 2.5149 0.6892 3.1614 24 6 3.9619 0.8537 3.0020 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5140 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 0.7090 1.1614 -3.4844 29 1 0.4401 -2.0733 1.3100 30 1 1.8377 -2.6022 0.3428 31 1 1.9422 -2.5796 2.1196 32 1 1.9441 3.7443 7.9646 33 1 4.1664 1.7945 2.4907 34 1 4.4368 0.8627 3.9829 35 1 4.3590 0.0267 2.4134 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908524140.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:48 Heat of formation + Delta-G solvation = 182.879377 kcal Electronic energy + Delta-G solvation = -21727.125469 eV Core-core repulsion = 18380.763869 eV Total energy + Delta-G solvation = -3346.361600 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.123 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.86108 -42.64292 -37.41380 -36.10308 -34.83091 -33.04566 -32.58030 -29.84657 -28.69837 -27.45625 -25.53113 -25.35985 -24.96202 -23.95294 -21.57002 -21.38665 -19.58751 -18.40098 -18.39604 -16.80667 -16.52991 -16.10978 -15.72222 -15.45730 -15.02744 -14.63772 -13.80045 -13.39003 -13.06764 -12.95250 -12.58606 -12.36187 -12.19275 -11.62576 -11.43997 -11.36900 -11.31299 -10.99135 -10.89771 -10.75776 -10.66454 -10.39648 -10.19174 -10.05229 -9.87498 -8.99652 -8.64172 -8.49862 -7.84766 -6.12181 -4.19321 0.67944 1.43657 2.20594 2.44094 2.71120 3.19722 3.26411 3.27019 3.31686 3.33566 3.72538 4.27666 4.54059 4.65318 4.90565 5.19581 5.20654 5.29309 5.46091 5.57647 5.66287 5.73456 5.98195 6.16368 6.29143 6.50935 6.69921 6.80907 6.96470 7.07827 7.39627 7.54624 7.66921 7.81306 7.82638 8.17750 8.34366 8.83113 8.91296 9.45821 10.94561 Molecular weight = 278.12amu Principal moments of inertia in cm(-1) A = 0.034885 B = 0.004244 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.455985 B = 6596.141275 C = 6764.623971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.224 3.776 3 H 0.037 0.963 4 C -0.510 4.510 5 H 0.067 0.933 6 C 0.063 3.937 7 N -0.888 5.888 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.471 5.471 13 C 0.045 3.955 14 C 0.402 3.598 15 N -0.305 5.305 16 N -0.225 5.225 17 C 0.204 3.796 18 C 0.271 3.729 19 N -0.450 5.450 20 C 0.165 3.835 21 O 0.085 5.915 22 N -0.372 5.372 23 N -0.453 5.453 24 C 0.081 3.919 25 H 0.032 0.968 26 H 0.088 0.912 27 H 0.035 0.965 28 H 0.264 0.736 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.045 0.955 32 H 0.270 0.730 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.102 3.165 16.387 17.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.120 3.880 3 H 0.055 0.945 4 C -0.549 4.549 5 H 0.085 0.915 6 C -0.139 4.139 7 N -0.526 5.526 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.198 5.198 13 C -0.103 4.103 14 C 0.047 3.953 15 N -0.152 5.152 16 N -0.072 5.072 17 C -0.061 4.061 18 C -0.001 4.001 19 N -0.183 5.183 20 C -0.076 4.076 21 O 0.023 5.977 22 N -0.079 5.079 23 N -0.147 5.147 24 C -0.062 4.062 25 H 0.051 0.949 26 H 0.107 0.893 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.110 0.890 31 H 0.064 0.936 32 H 0.285 0.715 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.399 2.718 15.693 16.817 hybrid contribution 0.875 0.086 -0.753 1.158 sum 6.274 2.804 14.940 16.445 Atomic orbital electron populations 1.22453 0.98661 1.00388 1.01855 1.19461 0.91524 0.93950 0.83085 0.94469 1.20937 1.31829 1.13049 0.89074 0.91527 1.24911 0.94919 0.95040 0.99053 1.69896 1.36132 1.22676 1.23911 0.86488 0.79113 0.79648 0.81736 1.20104 1.21270 1.20184 1.59410 1.59268 1.02990 0.98118 1.22273 0.99351 0.86536 1.02092 1.22924 0.84532 0.94579 0.93313 1.75024 1.17608 1.17330 1.05210 1.74418 1.14320 1.08836 1.09654 1.19957 0.88960 1.05179 0.91969 1.21785 0.84976 0.98850 0.94493 1.72081 1.31085 1.11870 1.03229 1.30592 0.78957 0.97444 1.00618 1.85297 1.33659 1.50266 1.28475 1.75043 1.20040 1.10901 1.01956 1.46137 1.10215 1.39046 1.19265 1.22127 0.75205 1.04939 1.03915 0.94909 0.89297 0.94602 0.92633 0.93572 0.88969 0.93596 0.71509 0.90075 0.89538 0.87644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.39 8.19 37.16 0.30 -4.09 16 2 C 0.22 5.59 2.31 -68.86 -0.16 5.43 16 3 H 0.04 1.04 8.11 -51.93 -0.42 0.62 16 4 C -0.51 -13.29 7.90 -34.44 -0.27 -13.57 16 5 H 0.07 1.68 6.76 -52.48 -0.35 1.33 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.79 11.32 55.43 0.63 -24.17 16 8 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 9 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 N -0.47 -10.15 4.72 -176.15 -0.83 -10.98 16 13 C 0.04 0.87 8.69 60.07 0.52 1.39 16 14 C 0.40 8.47 6.18 -319.18 -1.97 6.50 16 15 N -0.30 -6.81 9.84 30.27 0.30 -6.52 16 16 N -0.23 -4.80 12.23 32.60 0.40 -4.41 16 17 C 0.20 3.82 8.00 -153.72 -1.23 2.59 16 18 C 0.27 4.17 8.04 -156.05 -1.25 2.91 16 19 N -0.45 -5.94 11.58 -13.73 -0.16 -6.10 16 20 C 0.17 1.20 13.38 52.06 0.70 1.90 16 21 O 0.08 0.79 11.29 18.00 0.20 0.99 16 22 N -0.37 -4.83 10.62 30.97 0.33 -4.50 16 23 N -0.45 -8.36 3.23 -122.11 -0.39 -8.75 16 24 C 0.08 1.15 10.71 59.84 0.64 1.80 16 25 H 0.03 0.81 5.96 -51.93 -0.31 0.51 16 26 H 0.09 2.44 6.07 -51.92 -0.32 2.12 16 27 H 0.03 0.86 6.44 -51.93 -0.33 0.53 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.05 0.93 6.31 -51.93 -0.33 0.60 16 30 H 0.09 1.78 6.45 -51.93 -0.34 1.45 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.27 0.14 8.06 -52.49 -0.42 -0.29 16 33 H 0.08 1.11 8.14 -51.92 -0.42 0.69 16 34 H 0.09 1.07 7.01 -51.93 -0.36 0.70 16 35 H 0.10 1.45 8.09 -51.93 -0.42 1.03 16 LS Contribution 298.25 15.07 4.49 4.49 Total: -1.00 -32.87 298.25 -6.46 -39.32 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -3.58 Total: -1.36 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: -2.82 Total: 6.46 kcal Atomic # 7 Polarization: -65.69 SS G_CDS: 0.27 Total: -65.42 kcal Atomic # 8 Polarization: 0.79 SS G_CDS: 0.20 Total: 0.99 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.87 -6.46 -39.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908524140.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 222.204 kcal (2) G-P(sol) polarization free energy of solvation -32.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 189.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 182.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds