Wall clock time and date at job start Mon Mar 30 2020 23:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47805 * 2 1 4 4 C 1.50705 * 109.47077 * 240.00048 * 2 1 3 5 5 H 1.08007 * 119.99570 * 240.00329 * 4 2 1 6 6 C 1.37868 * 120.00264 * 60.00047 * 4 2 1 7 7 N 1.31514 * 119.99825 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00445 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46660 * 60.00076 * 8 6 4 10 10 H 1.48499 * 109.47422 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47019 * 300.00591 * 8 6 4 12 12 N 1.46900 * 109.47040 * 120.00084 * 2 1 3 13 13 C 1.46906 * 111.00152 * 58.95221 * 12 2 1 14 14 C 1.38256 * 111.00313 * 294.99736 * 12 2 1 15 15 N 1.31526 * 126.36197 * 71.15004 * 14 12 2 16 16 N 1.28523 * 110.05287 * 180.02562 * 15 14 12 17 17 C 1.31262 * 109.90548 * 0.02562 * 16 15 14 18 18 C 1.47859 * 126.45926 * 179.97438 * 17 16 15 19 19 N 1.35367 * 126.44544 * 359.97438 * 18 17 16 20 20 C 1.30929 * 105.58037 * 179.97438 * 19 18 17 21 21 O 1.33685 * 107.18126 * 0.02562 * 20 19 18 22 22 N 1.21287 * 110.07254 * 359.70585 * 21 20 19 23 23 N 1.36296 * 126.36516 * 251.18496 * 14 12 2 24 24 C 1.46494 * 127.15314 * 359.96775 * 23 14 12 25 25 H 1.09000 * 109.47151 * 300.00670 * 1 2 3 26 26 H 1.09008 * 109.46739 * 59.99521 * 1 2 3 27 27 H 1.08995 * 109.47805 * 180.02562 * 1 2 3 28 28 H 0.97004 * 120.00101 * 180.02562 * 7 6 4 29 29 H 1.08996 * 109.46819 * 297.43321 * 13 12 2 30 30 H 1.09002 * 109.46913 * 57.42838 * 13 12 2 31 31 H 1.08993 * 109.47230 * 177.43331 * 13 12 2 32 32 H 1.08001 * 126.41291 * 179.97438 * 20 19 18 33 33 H 1.09010 * 109.46879 * 95.60810 * 24 23 14 34 34 H 1.08996 * 109.47433 * 215.60131 * 24 23 14 35 35 H 1.09000 * 109.47475 * 335.61302 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3213 -1.1204 -4.0080 9 1 1.8257 -2.5203 -4.0077 10 1 1.8270 -0.4199 -5.2205 11 1 3.8063 -1.1211 -4.0081 12 7 2.0196 -0.6925 1.1994 13 6 1.5282 -2.0762 1.2460 14 6 1.6706 -0.0040 2.3464 15 7 0.4618 0.1044 2.8534 16 7 0.4951 0.8146 3.9241 17 6 1.7257 1.2027 4.1649 18 6 2.1784 2.0345 5.3004 19 7 1.4016 2.5396 6.2873 20 6 2.2144 3.2048 7.0690 21 8 3.4414 3.0921 6.5505 22 7 3.4075 2.4166 5.5437 23 7 2.5149 0.6892 3.1614 24 6 3.9619 0.8537 3.0020 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5140 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 0.7090 1.1614 -3.4844 29 1 0.4401 -2.0733 1.3100 30 1 1.8377 -2.6022 0.3428 31 1 1.9422 -2.5796 2.1196 32 1 1.9441 3.7443 7.9646 33 1 4.1664 1.7945 2.4907 34 1 4.4368 0.8627 3.9829 35 1 4.3590 0.0267 2.4134 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908524140.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:47 Heat of formation + Delta-G solvation = 159.636155 kcal Electronic energy + Delta-G solvation = -21728.133370 eV Core-core repulsion = 18380.763869 eV Total energy + Delta-G solvation = -3347.369502 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.123 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -46.79354 -44.16090 -39.16307 -37.08224 -36.23337 -34.90921 -33.66764 -31.47854 -30.47060 -28.78302 -27.36975 -27.08089 -26.20834 -24.91903 -23.29040 -22.63312 -21.27493 -19.42276 -19.33188 -18.46400 -18.02263 -17.74100 -17.10652 -16.83487 -16.55855 -15.98788 -15.52912 -15.02470 -14.49346 -14.29906 -13.94136 -13.67601 -13.41381 -13.27236 -13.12164 -13.06832 -12.72236 -12.68868 -12.53092 -12.32889 -12.15687 -12.09541 -11.81036 -11.73232 -11.32779 -10.99823 -10.54281 -10.13161 -9.59380 -8.15333 -6.29594 -0.38257 0.48965 0.85363 1.10872 1.47116 1.48630 1.56276 1.75321 1.98737 2.17044 2.41809 2.84937 2.92404 3.15498 3.63650 3.64688 3.98496 4.15633 4.16174 4.44262 4.51205 4.61824 4.65591 4.67319 4.76140 4.86688 4.96947 5.01222 5.06237 5.23467 5.48659 5.58509 5.69690 5.89272 6.14841 6.47130 6.79377 6.97202 7.36862 7.39877 8.91519 Molecular weight = 278.12amu Principal moments of inertia in cm(-1) A = 0.034885 B = 0.004244 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.455985 B = 6596.141275 C = 6764.623971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.234 3.766 3 H 0.000 1.000 4 C -0.519 4.519 5 H 0.075 0.925 6 C 0.015 3.985 7 N -0.921 5.921 8 Si 0.970 3.030 9 H -0.267 1.267 10 H -0.289 1.289 11 H -0.268 1.268 12 N -0.465 5.465 13 C 0.048 3.952 14 C 0.380 3.620 15 N -0.331 5.331 16 N -0.265 5.265 17 C 0.223 3.777 18 C 0.232 3.768 19 N -0.495 5.495 20 C 0.207 3.793 21 O 0.108 5.892 22 N -0.370 5.370 23 N -0.452 5.452 24 C 0.079 3.921 25 H 0.026 0.974 26 H 0.063 0.937 27 H 0.039 0.961 28 H 0.263 0.737 29 H 0.033 0.967 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.336 0.664 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.890 3.359 18.135 20.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.129 3.871 3 H 0.018 0.982 4 C -0.557 4.557 5 H 0.093 0.907 6 C -0.185 4.185 7 N -0.560 5.560 8 Si 0.794 3.206 9 H -0.192 1.192 10 H -0.215 1.215 11 H -0.193 1.193 12 N -0.191 5.191 13 C -0.099 4.099 14 C 0.024 3.976 15 N -0.178 5.178 16 N -0.110 5.110 17 C -0.044 4.044 18 C -0.039 4.039 19 N -0.227 5.227 20 C -0.032 4.032 21 O 0.040 5.960 22 N -0.074 5.074 23 N -0.144 5.144 24 C -0.062 4.062 25 H 0.045 0.955 26 H 0.082 0.918 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.112 0.888 31 H 0.089 0.911 32 H 0.350 0.650 33 H 0.104 0.896 34 H 0.127 0.873 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.184 2.878 17.440 19.080 hybrid contribution 0.390 0.195 -1.030 1.119 sum 7.574 3.073 16.410 18.333 Atomic orbital electron populations 1.22251 0.99176 1.00004 1.00226 1.19123 0.90895 0.92380 0.84749 0.98212 1.21215 1.31741 1.13208 0.89540 0.90685 1.25759 0.94975 0.95622 1.02125 1.70048 1.37348 1.24188 1.24456 0.85430 0.78798 0.78641 0.77686 1.19152 1.21477 1.19298 1.59288 1.58996 1.03502 0.97304 1.22298 0.98663 0.85612 1.03302 1.22840 0.84997 0.96045 0.93751 1.74873 1.18739 1.18169 1.05979 1.74318 1.16055 1.10528 1.10123 1.20508 0.88248 1.03495 0.92112 1.21587 0.86289 1.00914 0.95060 1.72034 1.32682 1.13901 1.04043 1.31904 0.76755 0.94395 1.00103 1.85276 1.34501 1.48950 1.27263 1.75044 1.19101 1.10441 1.02831 1.46321 1.11413 1.38070 1.18629 1.22373 0.73091 1.05366 1.05413 0.95468 0.91805 0.94235 0.92769 0.94827 0.88828 0.91068 0.65034 0.89599 0.87315 0.87150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.24 8.19 71.98 0.59 -7.65 16 2 C 0.23 12.04 2.31 44.17 0.10 12.15 16 3 H 0.00 0.00 8.11 -2.39 -0.02 -0.02 16 4 C -0.52 -27.23 7.90 25.60 0.20 -27.02 16 5 H 0.08 3.74 6.76 -2.91 -0.02 3.72 16 6 C 0.01 0.78 5.30 84.65 0.45 1.23 16 7 N -0.92 -52.65 11.32 21.44 0.24 -52.40 16 8 Si 0.97 41.95 29.54 68.60 2.03 43.98 16 9 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 10 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 12 N -0.46 -20.32 4.72 -711.22 -3.35 -23.67 16 13 C 0.05 1.87 8.69 127.69 1.11 2.98 16 14 C 0.38 16.39 6.18 260.22 1.61 18.00 16 15 N -0.33 -15.33 9.84 -58.14 -0.57 -15.91 16 16 N -0.26 -11.62 12.23 -50.77 -0.62 -12.24 16 17 C 0.22 8.42 8.00 136.20 1.09 9.51 16 18 C 0.23 6.88 8.04 137.02 1.10 7.98 16 19 N -0.49 -12.02 11.58 -314.50 -3.64 -15.66 16 20 C 0.21 2.12 13.38 130.49 1.75 3.86 16 21 O 0.11 1.59 11.29 74.46 0.84 2.43 16 22 N -0.37 -8.73 10.62 -58.89 -0.63 -9.36 16 23 N -0.45 -16.74 3.23 -540.23 -1.74 -18.49 16 24 C 0.08 2.18 10.71 127.77 1.37 3.55 16 25 H 0.03 1.41 5.96 -2.39 -0.01 1.40 16 26 H 0.06 3.65 6.07 -2.38 -0.01 3.64 16 27 H 0.04 1.97 6.44 -2.39 -0.02 1.96 16 28 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 29 H 0.03 1.37 6.31 -2.39 -0.02 1.36 16 30 H 0.09 3.57 6.45 -2.39 -0.02 3.55 16 31 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.34 -1.89 8.06 -2.91 -0.02 -1.91 16 33 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 34 H 0.11 2.50 7.01 -2.39 -0.02 2.49 16 35 H 0.11 2.95 8.09 -2.39 -0.02 2.93 16 Total: -1.00 -75.10 298.25 3.06 -72.04 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: 1.14 Total: 4.69 kcal Atomic # 6 Polarization: 15.22 SS G_CDS: 9.37 Total: 24.58 kcal Atomic # 7 Polarization: -137.41 SS G_CDS: -10.32 Total: -147.73 kcal Atomic # 8 Polarization: 1.59 SS G_CDS: 0.84 Total: 2.43 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -75.10 3.06 -72.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908524140.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 231.680 kcal (2) G-P(sol) polarization free energy of solvation -75.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds