Wall clock time and date at job start Mon Mar 30 2020 23:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35897 * 116.99869 * 2 1 4 4 C 1.38738 * 120.05227 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94391 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.05384 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.94399 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47064 * 89.99908 * 7 6 5 9 9 O 1.20826 * 119.99939 * 0.02562 * 8 7 6 10 10 O 1.34230 * 120.00046 * 179.97438 * 8 7 6 11 11 C 1.45192 * 117.00018 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47109 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.47278 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.47248 * 179.97438 * 13 12 11 15 15 H 1.07994 * 119.99944 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00024 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00192 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00189 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46684 * 90.00256 * 18 16 14 20 20 H 1.48492 * 109.47781 * 210.00284 * 18 16 14 21 21 H 1.48503 * 109.47095 * 330.00968 * 18 16 14 22 22 C 1.38270 * 120.11265 * 0.25255 * 6 5 4 23 23 C 1.38141 * 120.05541 * 359.45293 * 22 6 5 24 24 H 1.08994 * 109.47110 * 59.99814 * 1 2 3 25 25 H 1.09003 * 109.47262 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46723 * 299.99560 * 1 2 3 27 27 H 1.07996 * 120.02821 * 359.97438 * 4 3 2 28 28 H 1.07993 * 119.97516 * 180.02562 * 5 4 3 29 29 H 1.09002 * 109.47152 * 330.00001 * 7 6 5 30 30 H 1.09001 * 109.46980 * 210.00101 * 7 6 5 31 31 H 1.09001 * 109.47630 * 300.00318 * 11 10 8 32 32 H 1.08998 * 109.47321 * 60.00129 * 11 10 8 33 33 H 1.09005 * 109.47066 * 299.99718 * 12 11 10 34 34 H 1.08998 * 109.47698 * 59.99951 * 12 11 10 35 35 H 1.09001 * 109.47487 * 299.99960 * 13 12 11 36 36 H 1.09008 * 109.47307 * 59.99683 * 13 12 11 37 37 H 0.97001 * 120.00432 * 179.97438 * 17 16 14 38 38 H 1.07999 * 119.97019 * 179.70188 * 22 6 5 39 39 H 1.07998 * 120.03323 * 180.24999 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6757 0.0016 7 6 3.9862 5.0185 0.0028 8 6 4.2136 5.4676 -1.4177 9 8 3.8563 4.7692 -2.3366 10 8 4.8122 6.6439 -1.6619 11 6 4.9980 7.0125 -3.0540 12 6 5.6917 8.3739 -3.1329 13 6 5.8869 8.7626 -4.5997 14 6 6.5696 10.1038 -4.6775 15 1 6.8379 10.6265 -3.7713 16 6 6.8518 10.6636 -5.9055 17 7 7.4481 11.8338 -5.9733 18 14 6.3885 9.7592 -7.4729 19 1 5.0179 10.1545 -7.8856 20 1 7.3498 10.1094 -8.5492 21 1 6.4293 8.2948 -7.2300 22 6 1.9211 3.6047 0.0080 23 6 1.2915 2.3751 0.0013 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 4.0209 0.3799 -0.0005 28 1 5.1345 2.5749 -0.0008 29 1 4.9444 4.9376 0.5161 30 1 3.3584 5.7457 0.5177 31 1 5.6139 6.2620 -3.5495 32 1 4.0277 7.0696 -3.5474 33 1 5.0761 9.1246 -2.6373 34 1 6.6620 8.3165 -2.6396 35 1 6.5023 8.0120 -5.0958 36 1 4.9164 8.8202 -5.0927 37 1 7.6470 12.2275 -6.8373 38 1 1.3343 4.5113 0.0141 39 1 0.2130 2.3201 0.0022 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912958968.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:36 Heat of formation + Delta-G solvation = -114.771739 kcal Electronic energy + Delta-G solvation = -20159.491246 eV Core-core repulsion = 16839.177366 eV Total energy + Delta-G solvation = -3320.313880 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.66851 -40.04669 -37.95419 -36.40709 -34.07372 -32.65105 -31.80195 -31.35032 -28.66325 -27.67430 -26.66376 -23.30402 -22.94323 -21.92737 -20.60395 -20.13505 -18.46953 -17.51789 -16.87387 -16.80424 -16.24699 -16.12328 -16.03005 -15.40198 -14.64250 -14.44150 -14.19498 -13.98240 -13.71496 -13.20689 -12.75640 -12.72396 -12.66696 -12.34523 -12.06508 -11.93495 -11.82131 -11.35385 -11.09295 -11.04911 -10.94935 -10.52766 -10.41947 -9.99530 -9.80079 -9.72392 -9.25438 -9.25078 -8.57053 -8.40354 -6.07310 -4.06298 1.06414 1.10615 2.31830 2.84821 2.94729 3.29689 3.37355 3.41030 3.57348 4.39692 4.42766 4.45687 4.58168 4.71005 4.77472 4.93492 4.97630 5.05240 5.08795 5.22607 5.25965 5.32314 5.41992 5.46998 5.50904 5.74615 5.87175 5.95321 6.05492 6.31206 6.35660 6.39243 6.46965 6.68871 6.82001 7.07080 7.21210 7.32410 7.72420 7.91764 8.49499 8.96979 9.54232 11.05791 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.038461 B = 0.002500 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.831710 B =11196.507553 C =11543.094357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.127 3.873 4 C -0.150 4.150 5 C -0.062 4.062 6 C -0.111 4.111 7 C -0.070 4.070 8 C 0.455 3.545 9 O -0.505 6.505 10 O -0.358 6.358 11 C 0.066 3.934 12 C -0.101 4.101 13 C -0.011 4.011 14 C -0.521 4.521 15 H 0.074 0.926 16 C 0.067 3.933 17 N -0.901 5.901 18 Si 0.880 3.120 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.265 1.265 22 C -0.062 4.062 23 C -0.207 4.207 24 H 0.056 0.944 25 H 0.099 0.901 26 H 0.055 0.945 27 H 0.131 0.869 28 H 0.130 0.870 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.019 0.981 36 H 0.014 0.986 37 H 0.264 0.736 38 H 0.125 0.875 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.959 -21.980 15.786 30.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.082 3.918 4 C -0.169 4.169 5 C -0.080 4.080 6 C -0.112 4.112 7 C -0.108 4.108 8 C 0.298 3.702 9 O -0.393 6.393 10 O -0.274 6.274 11 C -0.007 4.007 12 C -0.139 4.139 13 C -0.048 4.048 14 C -0.559 4.559 15 H 0.092 0.908 16 C -0.135 4.135 17 N -0.540 5.540 18 Si 0.707 3.293 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.190 1.190 22 C -0.080 4.080 23 C -0.226 4.226 24 H 0.075 0.925 25 H 0.118 0.882 26 H 0.074 0.926 27 H 0.149 0.851 28 H 0.148 0.852 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.037 0.963 36 H 0.033 0.967 37 H 0.074 0.926 38 H 0.143 0.857 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.903 -22.219 15.343 29.926 hybrid contribution -0.516 -0.207 -1.148 1.276 sum -13.420 -22.426 14.194 29.740 Atomic orbital electron populations 1.23063 0.78354 1.03940 1.01456 1.86064 1.21443 1.27029 1.88708 1.19058 0.92418 0.84112 0.96206 1.20379 0.91362 0.98588 1.06574 1.20834 0.99878 0.90943 0.96387 1.19212 0.93587 0.93599 1.04756 1.20242 1.03736 0.95180 0.91630 1.23553 0.74737 0.79548 0.92387 1.90678 1.47326 1.54524 1.46778 1.86497 1.71268 1.36774 1.32892 1.23475 1.01180 0.98802 0.77219 1.21557 0.99980 0.91859 1.00508 1.19524 0.96779 0.97669 0.90867 1.21054 1.38470 1.01983 0.94419 0.90787 1.25022 0.94573 0.94734 0.99134 1.69907 1.42071 1.16779 1.25252 0.86780 0.78504 0.80883 0.83156 1.20223 1.21277 1.18977 1.20800 0.93715 0.97279 0.96220 1.21175 1.00018 0.92222 1.09145 0.92540 0.88240 0.92621 0.85066 0.85183 0.86786 0.86870 0.91592 0.91628 0.91556 0.91505 0.96293 0.96748 0.92648 0.85659 0.85387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.10 10.50 -19.42 -0.20 -3.31 16 3 C 0.13 1.33 6.69 -39.21 -0.26 1.07 16 4 C -0.15 -1.54 9.99 -39.43 -0.39 -1.94 16 5 C -0.06 -0.63 9.69 -39.61 -0.38 -1.01 16 6 C -0.11 -1.16 4.38 -104.60 -0.46 -1.62 16 7 C -0.07 -0.67 5.94 -29.03 -0.17 -0.84 16 8 C 0.46 6.48 7.95 36.01 0.29 6.76 16 9 O -0.51 -8.77 15.78 -18.75 -0.30 -9.07 16 10 O -0.36 -5.64 10.22 -39.26 -0.40 -6.05 16 11 C 0.07 1.16 5.47 37.16 0.20 1.36 16 12 C -0.10 -2.02 5.53 -26.73 -0.15 -2.17 16 13 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 14 C -0.52 -14.85 9.66 -34.44 -0.33 -15.19 16 15 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 16 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 17 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 18 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 22 C -0.06 -0.62 9.69 -39.60 -0.38 -1.00 16 23 C -0.21 -1.99 9.04 -39.43 -0.36 -2.34 16 24 H 0.06 0.30 7.66 -51.93 -0.40 -0.09 16 25 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 27 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 28 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 29 H 0.11 0.84 8.08 -51.93 -0.42 0.42 16 30 H 0.11 0.83 8.08 -51.93 -0.42 0.41 16 31 H 0.07 1.15 8.13 -51.93 -0.42 0.73 16 32 H 0.07 1.14 8.13 -51.93 -0.42 0.72 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 35 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 36 H 0.01 0.33 7.57 -51.92 -0.39 -0.06 16 37 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 38 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.13 0.94 6.30 -52.49 -0.33 0.61 16 LS Contribution 335.75 15.07 5.06 5.06 Total: -1.00 -33.92 335.75 -7.06 -40.98 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -5.70 Total: -3.44 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: -1.62 Total: -14.28 kcal Atomic # 7 Polarization: -27.77 SS G_CDS: 0.77 Total: -27.00 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.90 Total: -18.42 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.92 -7.06 -40.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912958968.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.796 kcal (2) G-P(sol) polarization free energy of solvation -33.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds