Wall clock time and date at job start Mon Mar 30 2020 23:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35897 * 116.99869 * 2 1 4 4 C 1.38738 * 120.05227 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94391 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.05384 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.94399 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47064 * 89.99908 * 7 6 5 9 9 O 1.20826 * 119.99939 * 0.02562 * 8 7 6 10 10 O 1.34230 * 120.00046 * 179.97438 * 8 7 6 11 11 C 1.45192 * 117.00018 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47109 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.47278 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.47248 * 179.97438 * 13 12 11 15 15 H 1.07994 * 119.99944 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00024 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00192 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00189 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46684 * 90.00256 * 18 16 14 20 20 H 1.48492 * 109.47781 * 210.00284 * 18 16 14 21 21 H 1.48503 * 109.47095 * 330.00968 * 18 16 14 22 22 C 1.38270 * 120.11265 * 0.25255 * 6 5 4 23 23 C 1.38141 * 120.05541 * 359.45293 * 22 6 5 24 24 H 1.08994 * 109.47110 * 59.99814 * 1 2 3 25 25 H 1.09003 * 109.47262 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46723 * 299.99560 * 1 2 3 27 27 H 1.07996 * 120.02821 * 359.97438 * 4 3 2 28 28 H 1.07993 * 119.97516 * 180.02562 * 5 4 3 29 29 H 1.09002 * 109.47152 * 330.00001 * 7 6 5 30 30 H 1.09001 * 109.46980 * 210.00101 * 7 6 5 31 31 H 1.09001 * 109.47630 * 300.00318 * 11 10 8 32 32 H 1.08998 * 109.47321 * 60.00129 * 11 10 8 33 33 H 1.09005 * 109.47066 * 299.99718 * 12 11 10 34 34 H 1.08998 * 109.47698 * 59.99951 * 12 11 10 35 35 H 1.09001 * 109.47487 * 299.99960 * 13 12 11 36 36 H 1.09008 * 109.47307 * 59.99683 * 13 12 11 37 37 H 0.97001 * 120.00432 * 179.97438 * 17 16 14 38 38 H 1.07999 * 119.97019 * 179.70188 * 22 6 5 39 39 H 1.07998 * 120.03323 * 180.24999 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6757 0.0016 7 6 3.9862 5.0185 0.0028 8 6 4.2136 5.4676 -1.4177 9 8 3.8563 4.7692 -2.3366 10 8 4.8122 6.6439 -1.6619 11 6 4.9980 7.0125 -3.0540 12 6 5.6917 8.3739 -3.1329 13 6 5.8869 8.7626 -4.5997 14 6 6.5696 10.1038 -4.6775 15 1 6.8379 10.6265 -3.7713 16 6 6.8518 10.6636 -5.9055 17 7 7.4481 11.8338 -5.9733 18 14 6.3885 9.7592 -7.4729 19 1 5.0179 10.1545 -7.8856 20 1 7.3498 10.1094 -8.5492 21 1 6.4293 8.2948 -7.2300 22 6 1.9211 3.6047 0.0080 23 6 1.2915 2.3751 0.0013 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 4.0209 0.3799 -0.0005 28 1 5.1345 2.5749 -0.0008 29 1 4.9444 4.9376 0.5161 30 1 3.3584 5.7457 0.5177 31 1 5.6139 6.2620 -3.5495 32 1 4.0277 7.0696 -3.5474 33 1 5.0761 9.1246 -2.6373 34 1 6.6620 8.3165 -2.6396 35 1 6.5023 8.0120 -5.0958 36 1 4.9164 8.8202 -5.0927 37 1 7.6470 12.2275 -6.8373 38 1 1.3343 4.5113 0.0141 39 1 0.2130 2.3201 0.0022 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000912958968.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:36 Heat of formation + Delta-G solvation = -134.507677 kcal Electronic energy + Delta-G solvation = -20160.347060 eV Core-core repulsion = 16839.177366 eV Total energy + Delta-G solvation = -3321.169694 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.63540 -40.91992 -38.71701 -37.63071 -35.91839 -33.92832 -33.32172 -32.04801 -29.77235 -28.86791 -27.52047 -24.93638 -23.67645 -22.90280 -22.07410 -21.41695 -19.12894 -19.02184 -18.60149 -17.82124 -17.30292 -17.10489 -16.64603 -16.37690 -16.10553 -15.79626 -15.24531 -14.82237 -14.75215 -14.45550 -14.41439 -13.97099 -13.74450 -13.46499 -13.05570 -12.86726 -12.77559 -12.61950 -12.53655 -12.10240 -12.01059 -11.95652 -11.76590 -11.73988 -11.42483 -11.36541 -11.33904 -10.77913 -9.96968 -9.12757 -8.30528 -6.35365 0.31524 0.38543 1.22770 1.36246 1.37928 1.49635 1.76916 2.35171 2.36519 2.79814 3.04426 3.62830 3.80268 3.90095 3.94995 4.01054 4.05751 4.19403 4.36186 4.37506 4.39535 4.40243 4.56061 4.65400 4.72559 4.73405 4.74802 4.79279 4.96606 5.06122 5.23979 5.34678 5.36767 5.48853 5.55524 5.58603 5.63021 5.79140 6.25614 6.42025 6.71529 6.77889 7.29024 8.85873 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.038461 B = 0.002500 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.831710 B =11196.507553 C =11543.094357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.337 6.337 3 C 0.114 3.886 4 C -0.167 4.167 5 C -0.071 4.071 6 C -0.126 4.126 7 C -0.061 4.061 8 C 0.456 3.544 9 O -0.539 6.539 10 O -0.360 6.360 11 C 0.075 3.925 12 C -0.092 4.092 13 C -0.010 4.010 14 C -0.533 4.533 15 H 0.036 0.964 16 C 0.004 3.996 17 N -0.949 5.949 18 Si 0.950 3.050 19 H -0.266 1.266 20 H -0.283 1.283 21 H -0.247 1.247 22 C -0.072 4.072 23 C -0.213 4.213 24 H 0.059 0.941 25 H 0.119 0.881 26 H 0.067 0.933 27 H 0.139 0.861 28 H 0.144 0.856 29 H 0.140 0.860 30 H 0.140 0.860 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.024 0.976 36 H 0.023 0.977 37 H 0.267 0.733 38 H 0.141 0.859 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.244 -23.618 15.981 31.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.251 6.251 3 C 0.069 3.931 4 C -0.186 4.186 5 C -0.089 4.089 6 C -0.127 4.127 7 C -0.098 4.098 8 C 0.301 3.699 9 O -0.429 6.429 10 O -0.277 6.277 11 C 0.002 3.998 12 C -0.130 4.130 13 C -0.048 4.048 14 C -0.571 4.571 15 H 0.055 0.945 16 C -0.193 4.193 17 N -0.589 5.589 18 Si 0.773 3.227 19 H -0.191 1.191 20 H -0.209 1.209 21 H -0.171 1.171 22 C -0.090 4.090 23 C -0.232 4.232 24 H 0.078 0.922 25 H 0.137 0.863 26 H 0.086 0.914 27 H 0.157 0.843 28 H 0.162 0.838 29 H 0.158 0.842 30 H 0.158 0.842 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.076 0.924 38 H 0.159 0.841 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -14.199 -23.871 15.569 31.841 hybrid contribution -0.142 0.291 -1.104 1.151 sum -14.341 -23.580 14.465 31.160 Atomic orbital electron populations 1.23337 0.76514 1.05571 1.02193 1.86041 1.23452 1.26923 1.88647 1.19291 0.92798 0.84724 0.96273 1.20623 0.91800 0.99169 1.07001 1.21089 1.00774 0.90921 0.96083 1.19396 0.93977 0.93975 1.05320 1.20389 1.05611 0.95215 0.88589 1.24484 0.73245 0.78287 0.93930 1.90668 1.48755 1.55208 1.48250 1.86494 1.71768 1.37921 1.31473 1.23124 1.00944 0.97225 0.78540 1.21317 1.00257 0.93458 0.97955 1.19456 0.96518 0.95099 0.93685 1.21400 1.38581 1.03880 0.93239 0.94528 1.26009 0.94514 0.95582 1.03178 1.70057 1.43714 1.18731 1.26407 0.85665 0.78531 0.80317 0.78195 1.19089 1.20874 1.17075 1.21103 0.93958 0.98060 0.95874 1.21436 1.01117 0.91915 1.08730 0.92185 0.86296 0.91428 0.84347 0.83789 0.84190 0.84204 0.91488 0.91393 0.91751 0.91776 0.95759 0.95849 0.92401 0.84131 0.83493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.34 -6.25 10.50 -92.39 -0.97 -7.22 16 3 C 0.11 2.29 6.69 22.51 0.15 2.44 16 4 C -0.17 -3.31 9.99 22.37 0.22 -3.09 16 5 C -0.07 -1.33 9.69 22.25 0.22 -1.12 16 6 C -0.13 -2.39 4.38 -19.85 -0.09 -2.47 16 7 C -0.06 -1.00 5.94 29.10 0.17 -0.83 16 8 C 0.46 12.02 7.95 71.24 0.57 12.59 16 9 O -0.54 -17.94 15.78 21.97 0.35 -17.59 16 10 O -0.36 -10.65 10.22 -51.41 -0.53 -11.17 16 11 C 0.08 2.51 5.47 71.98 0.39 2.90 16 12 C -0.09 -3.59 5.53 30.59 0.17 -3.42 16 13 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 14 C -0.53 -30.74 9.66 25.60 0.25 -30.49 16 15 H 0.04 2.31 7.99 -2.91 -0.02 2.28 16 16 C 0.00 0.25 5.47 84.65 0.46 0.71 16 17 N -0.95 -59.53 13.96 21.45 0.30 -59.23 16 18 Si 0.95 44.29 27.47 68.60 1.88 46.17 16 19 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 20 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 21 H -0.25 -10.73 6.54 99.48 0.65 -10.08 16 22 C -0.07 -1.30 9.69 22.25 0.22 -1.09 16 23 C -0.21 -3.79 9.04 22.37 0.20 -3.59 16 24 H 0.06 0.56 7.66 -2.39 -0.02 0.54 16 25 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.07 0.51 7.66 -2.39 -0.02 0.49 16 27 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 28 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 29 H 0.14 1.58 8.08 -2.39 -0.02 1.56 16 30 H 0.14 1.56 8.08 -2.39 -0.02 1.54 16 31 H 0.07 2.22 8.13 -2.39 -0.02 2.20 16 32 H 0.07 2.24 8.13 -2.39 -0.02 2.22 16 33 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 34 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.02 1.10 7.20 -2.39 -0.02 1.08 16 36 H 0.02 1.04 7.57 -2.38 -0.02 1.03 16 37 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 38 H 0.14 1.99 8.06 -2.91 -0.02 1.96 16 39 H 0.15 1.88 6.30 -2.91 -0.02 1.86 16 Total: -1.00 -73.54 335.75 6.18 -67.36 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: 0.97 Total: 8.17 kcal Atomic # 6 Polarization: -30.66 SS G_CDS: 4.17 Total: -26.49 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: 0.30 Total: -59.23 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -1.15 Total: -35.98 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.88 Total: 46.17 kcal Total: -73.54 6.18 -67.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912958968.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.148 kcal (2) G-P(sol) polarization free energy of solvation -73.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds