Wall clock time and date at job start Mon Mar 30 2020 23:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47169 * 2 1 4 4 O 1.42901 * 109.47223 * 239.99722 * 2 1 3 5 5 C 1.35903 * 116.99894 * 84.83688 * 4 2 1 6 6 C 1.38739 * 120.05397 * 354.62359 * 5 4 2 7 7 C 1.38139 * 119.94216 * 179.97438 * 6 5 4 8 8 C 1.38266 * 120.05584 * 0.02562 * 7 6 5 9 9 C 1.38262 * 120.11373 * 0.26692 * 8 7 6 10 10 C 1.38151 * 120.05132 * 359.45624 * 9 8 7 11 11 C 1.50703 * 109.46979 * 119.99945 * 2 1 3 12 12 O 1.20825 * 119.99843 * 120.00031 * 11 2 1 13 13 O 1.34227 * 120.00260 * 300.00258 * 11 2 1 14 14 C 1.45198 * 117.00079 * 179.97438 * 13 11 2 15 15 C 1.53003 * 109.46949 * 179.97438 * 14 13 11 16 16 C 1.53005 * 109.47178 * 180.02562 * 15 14 13 17 17 C 1.50700 * 109.47146 * 180.02562 * 16 15 14 18 18 H 1.07997 * 119.99778 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99783 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00071 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99829 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47029 * 89.99824 * 21 19 17 23 23 H 1.48494 * 109.46904 * 209.99827 * 21 19 17 24 24 H 1.48500 * 109.46814 * 329.99822 * 21 19 17 25 25 H 1.08995 * 109.46790 * 60.00032 * 1 2 3 26 26 H 1.09003 * 109.46862 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47048 * 299.99884 * 1 2 3 28 28 H 1.08004 * 120.02702 * 359.97438 * 6 5 4 29 29 H 1.08004 * 119.96954 * 180.02562 * 7 6 5 30 30 H 1.08005 * 119.94012 * 179.97438 * 8 7 6 31 31 H 1.07998 * 119.97058 * 179.70445 * 9 8 7 32 32 H 1.08006 * 120.02211 * 180.27856 * 10 9 8 33 33 H 1.08999 * 109.47409 * 299.99634 * 14 13 11 34 34 H 1.09004 * 109.47370 * 60.00492 * 14 13 11 35 35 H 1.08993 * 109.47548 * 300.00072 * 15 14 13 36 36 H 1.09001 * 109.47144 * 60.00559 * 15 14 13 37 37 H 1.08993 * 109.46924 * 300.00435 * 16 15 14 38 38 H 1.09001 * 109.46643 * 60.00232 * 16 15 14 39 39 H 0.96998 * 120.00087 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.1093 0.0617 -2.3050 6 6 1.6551 1.3724 -2.3288 7 6 1.7614 2.1179 -3.4869 8 6 2.3193 1.5588 -4.6217 9 6 2.7671 0.2509 -4.6023 10 6 2.6684 -0.4971 -3.4450 11 6 2.0324 -0.7104 1.2305 12 8 2.7270 -1.6928 1.1196 13 8 1.7081 -0.2519 2.4496 14 6 2.2267 -0.9864 3.5897 15 6 1.7557 -0.3191 4.8834 16 6 2.3027 -1.0928 6.0848 17 6 1.8383 -0.4359 7.3591 18 1 1.2156 0.4455 7.3163 19 6 2.2092 -0.9595 8.5794 20 7 2.9679 -2.0324 8.6314 21 14 1.6341 -0.1448 10.1590 22 1 0.3385 -0.7373 10.5782 23 1 2.6454 -0.3618 11.2245 24 1 1.4612 1.3122 9.9299 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.2189 1.8094 -1.4428 29 1 1.4083 3.1385 -3.5059 30 1 2.4011 2.1433 -5.5263 31 1 3.1982 -0.1851 -5.4914 32 1 3.0225 -1.5173 -3.4290 33 1 1.8625 -2.0132 3.5566 34 1 3.3163 -0.9861 3.5570 35 1 2.1202 0.7075 4.9164 36 1 0.6662 -0.3191 4.9164 37 1 1.9386 -2.1196 6.0521 38 1 3.3922 -1.0924 6.0516 39 1 3.2285 -2.4010 9.4899 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914616247.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:47:02 Heat of formation + Delta-G solvation = -111.247210 kcal Electronic energy + Delta-G solvation = -20403.845012 eV Core-core repulsion = 17083.683967 eV Total energy + Delta-G solvation = -3320.161045 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.98242 -39.93455 -37.82429 -36.39834 -34.07126 -32.70312 -31.65962 -31.09827 -29.95917 -27.24222 -25.24474 -23.59561 -22.99340 -22.38113 -20.66173 -20.30344 -18.79482 -17.41939 -17.05064 -16.56979 -16.33123 -16.08600 -15.53512 -15.36907 -14.65902 -14.49234 -14.12213 -13.82663 -13.70644 -13.29531 -12.92491 -12.63566 -12.29814 -12.17202 -12.09964 -11.89201 -11.85338 -11.41613 -11.12970 -10.99703 -10.69179 -10.66808 -10.45633 -10.32093 -9.77313 -9.54199 -9.33452 -9.19470 -8.54248 -8.41117 -6.05689 -4.09010 0.99912 1.10552 2.07952 2.18602 3.29497 3.30616 3.35903 3.39263 3.46209 4.30971 4.40894 4.50391 4.51773 4.56713 4.66891 4.80878 5.03827 5.07934 5.26022 5.29468 5.30273 5.39195 5.51921 5.55577 5.67431 5.76713 5.94632 5.97395 6.06868 6.20283 6.36951 6.42161 6.48785 6.76187 6.93185 7.03659 7.57233 7.67775 7.79582 7.92281 8.32875 8.97180 9.55411 11.05728 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.049270 B = 0.002452 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.162680 B =11417.793865 C =11700.082054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.094 3.906 3 H 0.111 0.889 4 O -0.289 6.289 5 C 0.132 3.868 6 C -0.212 4.212 7 C -0.079 4.079 8 C -0.160 4.160 9 C -0.081 4.081 10 C -0.149 4.149 11 C 0.461 3.539 12 O -0.488 6.488 13 O -0.352 6.352 14 C 0.069 3.931 15 C -0.108 4.108 16 C 0.024 3.976 17 C -0.522 4.522 18 H 0.058 0.942 19 C 0.056 3.944 20 N -0.894 5.894 21 Si 0.896 3.104 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.273 1.273 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.132 0.868 29 H 0.126 0.874 30 H 0.123 0.877 31 H 0.129 0.871 32 H 0.133 0.867 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.821 7.584 -25.774 27.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.036 3.964 3 H 0.128 0.872 4 O -0.202 6.202 5 C 0.087 3.913 6 C -0.231 4.231 7 C -0.097 4.097 8 C -0.178 4.178 9 C -0.099 4.099 10 C -0.167 4.167 11 C 0.301 3.699 12 O -0.374 6.374 13 O -0.269 6.269 14 C -0.004 4.004 15 C -0.146 4.146 16 C -0.013 4.013 17 C -0.560 4.560 18 H 0.076 0.924 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.723 3.277 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.198 1.198 25 H 0.096 0.904 26 H 0.094 0.906 27 H 0.111 0.889 28 H 0.150 0.850 29 H 0.144 0.856 30 H 0.141 0.859 31 H 0.147 0.853 32 H 0.150 0.850 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.467 6.941 -25.585 26.736 hybrid contribution -0.190 0.393 1.039 1.127 sum -3.657 7.334 -24.546 25.878 Atomic orbital electron populations 1.22333 0.91492 1.04756 1.04613 1.21667 0.96286 0.96567 0.81831 0.87160 1.86167 1.81182 1.37176 1.15716 1.19060 0.95459 0.90395 0.86403 1.21368 1.06976 0.94284 1.00434 1.20968 0.97083 0.99475 0.92223 1.21095 1.02102 0.95849 0.98774 1.20992 0.97806 0.94003 0.97068 1.20504 1.03458 1.01609 0.91141 1.22846 0.78455 0.83340 0.85252 1.90702 1.34392 1.25059 1.87277 1.86453 1.69759 1.56246 1.14426 1.23606 0.99055 0.95671 0.82058 1.21783 1.01229 1.00384 0.91195 1.19060 0.96585 0.95425 0.90279 1.21157 1.31777 1.12455 0.90635 0.92406 1.25037 0.95077 0.95037 0.99355 1.69962 1.36056 1.21778 1.25505 0.86536 0.78428 0.79791 0.82910 1.20598 1.21183 1.19812 0.90402 0.90595 0.88924 0.85003 0.85636 0.85881 0.85271 0.84954 0.91243 0.91289 0.92050 0.92025 0.96183 0.96184 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 9.10 37.16 0.34 -1.25 16 2 C 0.09 1.09 2.75 -27.88 -0.08 1.01 16 3 H 0.11 1.02 6.32 -51.93 -0.33 0.70 16 4 O -0.29 -3.77 9.33 -39.39 -0.37 -4.14 16 5 C 0.13 1.45 6.60 -39.22 -0.26 1.19 16 6 C -0.21 -1.89 8.24 -39.43 -0.32 -2.22 16 7 C -0.08 -0.61 10.04 -39.61 -0.40 -1.00 16 8 C -0.16 -1.17 10.04 -39.56 -0.40 -1.57 16 9 C -0.08 -0.63 10.04 -39.60 -0.40 -1.03 16 10 C -0.15 -1.47 9.99 -39.43 -0.39 -1.86 16 11 C 0.46 7.17 7.33 36.01 0.26 7.43 16 12 O -0.49 -9.28 16.25 -25.48 -0.41 -9.70 16 13 O -0.35 -5.68 10.12 -39.25 -0.40 -6.08 16 14 C 0.07 1.25 5.47 37.16 0.20 1.45 16 15 C -0.11 -2.20 5.53 -26.73 -0.15 -2.35 16 16 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 17 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -26.72 13.29 55.43 0.74 -25.99 16 21 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 25 H 0.08 0.57 6.90 -51.93 -0.36 0.21 16 26 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.09 0.77 8.11 -51.93 -0.42 0.35 16 28 H 0.13 0.96 5.43 -52.48 -0.28 0.68 16 29 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 30 H 0.12 0.63 8.06 -52.48 -0.42 0.20 16 31 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 32 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 33 H 0.07 1.27 8.13 -51.93 -0.42 0.85 16 34 H 0.07 1.27 8.13 -51.93 -0.42 0.85 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 336.54 15.07 5.07 5.07 Total: -1.00 -32.51 336.54 -8.11 -40.63 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -5.58 Total: -3.10 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -2.14 Total: -13.10 kcal Atomic # 7 Polarization: -26.72 SS G_CDS: 0.74 Total: -25.99 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -1.18 Total: -19.91 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.51 -8.11 -40.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914616247.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.621 kcal (2) G-P(sol) polarization free energy of solvation -32.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds