Wall clock time and date at job start Mon Mar 30 2020 23:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47169 * 2 1 4 4 O 1.42901 * 109.47223 * 239.99722 * 2 1 3 5 5 C 1.35903 * 116.99894 * 84.83688 * 4 2 1 6 6 C 1.38739 * 120.05397 * 354.62359 * 5 4 2 7 7 C 1.38139 * 119.94216 * 179.97438 * 6 5 4 8 8 C 1.38266 * 120.05584 * 0.02562 * 7 6 5 9 9 C 1.38262 * 120.11373 * 0.26692 * 8 7 6 10 10 C 1.38151 * 120.05132 * 359.45624 * 9 8 7 11 11 C 1.50703 * 109.46979 * 119.99945 * 2 1 3 12 12 O 1.20825 * 119.99843 * 120.00031 * 11 2 1 13 13 O 1.34227 * 120.00260 * 300.00258 * 11 2 1 14 14 C 1.45198 * 117.00079 * 179.97438 * 13 11 2 15 15 C 1.53003 * 109.46949 * 179.97438 * 14 13 11 16 16 C 1.53005 * 109.47178 * 180.02562 * 15 14 13 17 17 C 1.50700 * 109.47146 * 180.02562 * 16 15 14 18 18 H 1.07997 * 119.99778 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99783 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00071 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99829 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47029 * 89.99824 * 21 19 17 23 23 H 1.48494 * 109.46904 * 209.99827 * 21 19 17 24 24 H 1.48500 * 109.46814 * 329.99822 * 21 19 17 25 25 H 1.08995 * 109.46790 * 60.00032 * 1 2 3 26 26 H 1.09003 * 109.46862 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47048 * 299.99884 * 1 2 3 28 28 H 1.08004 * 120.02702 * 359.97438 * 6 5 4 29 29 H 1.08004 * 119.96954 * 180.02562 * 7 6 5 30 30 H 1.08005 * 119.94012 * 179.97438 * 8 7 6 31 31 H 1.07998 * 119.97058 * 179.70445 * 9 8 7 32 32 H 1.08006 * 120.02211 * 180.27856 * 10 9 8 33 33 H 1.08999 * 109.47409 * 299.99634 * 14 13 11 34 34 H 1.09004 * 109.47370 * 60.00492 * 14 13 11 35 35 H 1.08993 * 109.47548 * 300.00072 * 15 14 13 36 36 H 1.09001 * 109.47144 * 60.00559 * 15 14 13 37 37 H 1.08993 * 109.46924 * 300.00435 * 16 15 14 38 38 H 1.09001 * 109.46643 * 60.00232 * 16 15 14 39 39 H 0.96998 * 120.00087 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.1093 0.0617 -2.3050 6 6 1.6551 1.3724 -2.3288 7 6 1.7614 2.1179 -3.4869 8 6 2.3193 1.5588 -4.6217 9 6 2.7671 0.2509 -4.6023 10 6 2.6684 -0.4971 -3.4450 11 6 2.0324 -0.7104 1.2305 12 8 2.7270 -1.6928 1.1196 13 8 1.7081 -0.2519 2.4496 14 6 2.2267 -0.9864 3.5897 15 6 1.7557 -0.3191 4.8834 16 6 2.3027 -1.0928 6.0848 17 6 1.8383 -0.4359 7.3591 18 1 1.2156 0.4455 7.3163 19 6 2.2092 -0.9595 8.5794 20 7 2.9679 -2.0324 8.6314 21 14 1.6341 -0.1448 10.1590 22 1 0.3385 -0.7373 10.5782 23 1 2.6454 -0.3618 11.2245 24 1 1.4612 1.3122 9.9299 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.2189 1.8094 -1.4428 29 1 1.4083 3.1385 -3.5059 30 1 2.4011 2.1433 -5.5263 31 1 3.1982 -0.1851 -5.4914 32 1 3.0225 -1.5173 -3.4290 33 1 1.8625 -2.0132 3.5566 34 1 3.3163 -0.9861 3.5570 35 1 2.1202 0.7075 4.9164 36 1 0.6662 -0.3191 4.9164 37 1 1.9386 -2.1196 6.0521 38 1 3.3922 -1.0924 6.0516 39 1 3.2285 -2.4010 9.4899 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914616247.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:47:02 Heat of formation + Delta-G solvation = -128.418212 kcal Electronic energy + Delta-G solvation = -20404.589602 eV Core-core repulsion = 17083.683967 eV Total energy + Delta-G solvation = -3320.905635 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.03376 -40.94529 -38.62729 -37.75241 -35.97922 -33.92606 -33.23418 -31.75462 -30.63314 -29.07430 -26.36265 -25.08679 -23.84190 -23.25728 -22.20400 -21.63422 -19.61241 -18.69970 -18.50020 -17.96086 -17.79151 -16.86015 -16.51718 -16.50145 -16.23842 -15.59321 -15.33066 -14.90693 -14.43528 -14.28367 -14.09721 -13.99696 -13.80997 -13.56776 -13.32093 -12.92473 -12.83957 -12.52663 -12.45883 -12.40455 -12.19242 -12.13396 -11.86634 -11.68440 -11.45997 -11.38981 -11.22608 -10.57900 -9.95004 -9.23823 -8.22194 -6.33846 0.38697 0.44597 0.91056 1.02797 1.41945 1.43263 1.54569 2.34306 2.42428 2.83768 3.11888 3.31437 3.59114 3.71393 3.91439 3.96216 3.99214 4.00907 4.29381 4.36158 4.38872 4.51671 4.58364 4.63884 4.74528 4.77727 4.81435 5.05700 5.07520 5.09753 5.29001 5.33410 5.47975 5.48685 5.60828 5.62497 5.79499 5.80819 6.17826 6.30230 6.52253 6.82351 7.35833 8.90065 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.049270 B = 0.002452 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.162680 B =11417.793865 C =11700.082054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.100 3.900 3 H 0.137 0.863 4 O -0.317 6.317 5 C 0.103 3.897 6 C -0.216 4.216 7 C -0.082 4.082 8 C -0.159 4.159 9 C -0.083 4.083 10 C -0.171 4.171 11 C 0.459 3.541 12 O -0.529 6.529 13 O -0.343 6.343 14 C 0.077 3.923 15 C -0.092 4.092 16 C 0.024 3.976 17 C -0.542 4.542 18 H 0.067 0.933 19 C -0.003 4.003 20 N -0.935 5.935 21 Si 0.970 3.030 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.260 1.260 25 H 0.100 0.900 26 H 0.064 0.936 27 H 0.104 0.896 28 H 0.148 0.852 29 H 0.153 0.847 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.125 0.875 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.071 0.929 37 H -0.004 1.004 38 H -0.004 1.004 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.136 10.225 -26.897 29.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.042 3.958 3 H 0.155 0.845 4 O -0.232 6.232 5 C 0.059 3.941 6 C -0.234 4.234 7 C -0.100 4.100 8 C -0.177 4.177 9 C -0.101 4.101 10 C -0.189 4.189 11 C 0.302 3.698 12 O -0.418 6.418 13 O -0.259 6.259 14 C 0.004 3.996 15 C -0.130 4.130 16 C -0.013 4.013 17 C -0.579 4.579 18 H 0.086 0.914 19 C -0.201 4.201 20 N -0.575 5.575 21 Si 0.794 3.206 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.184 1.184 25 H 0.119 0.881 26 H 0.083 0.917 27 H 0.122 0.878 28 H 0.165 0.835 29 H 0.170 0.830 30 H 0.168 0.832 31 H 0.169 0.831 32 H 0.143 0.857 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.015 0.985 38 H 0.014 0.986 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.799 9.605 -26.734 28.810 hybrid contribution 0.257 -0.429 1.251 1.347 sum -4.542 9.176 -25.484 27.464 Atomic orbital electron populations 1.22350 0.89356 1.04584 1.06260 1.21829 0.97617 0.96658 0.79653 0.84535 1.86117 1.81992 1.38525 1.16555 1.19333 0.97320 0.91509 0.85931 1.21585 1.06713 0.93444 1.01680 1.21359 0.96375 1.00572 0.91684 1.21497 1.00767 0.95662 0.99760 1.21299 0.97414 0.94348 0.97015 1.20703 1.04321 1.01884 0.92011 1.23808 0.77311 0.82865 0.85807 1.90686 1.36383 1.27082 1.87634 1.86435 1.69492 1.55633 1.14385 1.23243 0.98643 0.95337 0.82424 1.21464 1.01491 0.99942 0.90055 1.18950 0.95138 0.94859 0.92340 1.21620 1.31784 1.12829 0.91715 0.91445 1.26036 0.95086 0.95596 1.03374 1.70102 1.37409 1.23410 1.26549 0.85372 0.77987 0.79241 0.77998 1.19727 1.20957 1.18412 0.88136 0.91719 0.87781 0.83466 0.82964 0.83247 0.83094 0.85698 0.91806 0.91880 0.91112 0.91010 0.98546 0.98568 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.76 9.10 71.98 0.66 -2.10 16 2 C 0.10 2.20 2.75 29.85 0.08 2.28 16 3 H 0.14 2.25 6.32 -2.39 -0.02 2.24 16 4 O -0.32 -8.32 9.33 -73.38 -0.68 -9.00 16 5 C 0.10 2.21 6.60 22.51 0.15 2.36 16 6 C -0.22 -3.39 8.24 22.37 0.18 -3.20 16 7 C -0.08 -1.00 10.04 22.25 0.22 -0.78 16 8 C -0.16 -1.86 10.04 22.28 0.22 -1.64 16 9 C -0.08 -1.16 10.04 22.25 0.22 -0.94 16 10 C -0.17 -3.35 9.99 22.36 0.22 -3.13 16 11 C 0.46 14.29 7.33 71.24 0.52 14.81 16 12 O -0.53 -20.78 16.25 28.40 0.46 -20.31 16 13 O -0.34 -10.85 10.12 -51.39 -0.52 -11.37 16 14 C 0.08 2.83 5.47 71.98 0.39 3.22 16 15 C -0.09 -3.71 5.53 30.60 0.17 -3.54 16 16 C 0.02 1.27 4.97 29.85 0.15 1.42 16 17 C -0.54 -30.32 9.11 25.60 0.23 -30.09 16 18 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 19 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 20 N -0.93 -56.90 13.29 21.45 0.28 -56.61 16 21 Si 0.97 43.71 29.54 68.60 2.03 45.74 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 24 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 25 H 0.10 1.20 6.90 -2.39 -0.02 1.19 16 26 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.10 1.47 8.11 -2.39 -0.02 1.45 16 28 H 0.15 1.71 5.43 -2.91 -0.02 1.69 16 29 H 0.15 1.00 8.06 -2.91 -0.02 0.97 16 30 H 0.15 0.94 8.06 -2.91 -0.02 0.91 16 31 H 0.15 1.33 8.06 -2.91 -0.02 1.30 16 32 H 0.12 2.47 8.06 -2.91 -0.02 2.45 16 33 H 0.06 2.41 8.13 -2.39 -0.02 2.39 16 34 H 0.06 2.39 8.13 -2.38 -0.02 2.37 16 35 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 36 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 37 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 38 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 39 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -71.52 336.54 6.49 -65.03 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: 1.03 Total: 7.59 kcal Atomic # 6 Polarization: -24.94 SS G_CDS: 3.89 Total: -21.05 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: 0.28 Total: -56.61 kcal Atomic # 8 Polarization: -39.95 SS G_CDS: -0.74 Total: -40.69 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -71.52 6.49 -65.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914616247.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.392 kcal (2) G-P(sol) polarization free energy of solvation -71.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds