Wall clock time and date at job start Mon Mar 30 2020 23:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99817 * 2 1 4 4 C 1.38754 * 120.05719 * 359.95522 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05494 * 359.94904 * 7 6 5 9 9 C 1.50694 * 120.02852 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47497 * 265.00833 * 9 8 7 11 11 O 1.20819 * 119.99949 * 359.97438 * 10 9 8 12 12 O 1.34228 * 119.99841 * 179.97438 * 10 9 8 13 13 C 1.45205 * 116.99916 * 179.97438 * 12 10 9 14 14 C 1.52992 * 109.47474 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47577 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.47329 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99977 * 0.02562 * 16 15 14 18 18 C 1.37869 * 119.99909 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00283 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00050 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47166 * 90.00208 * 20 18 16 22 22 H 1.48497 * 109.47077 * 210.00110 * 20 18 16 23 23 H 1.48504 * 109.46889 * 329.99998 * 20 18 16 24 24 H 1.09000 * 109.47023 * 60.00240 * 1 2 3 25 25 H 1.09002 * 109.46809 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47655 * 300.00222 * 1 2 3 27 27 H 1.08002 * 120.02758 * 0.04150 * 4 3 2 28 28 H 1.07997 * 119.97891 * 180.29657 * 5 4 3 29 29 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 30 30 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 31 31 H 1.09004 * 109.47092 * 25.00582 * 9 8 7 32 32 H 1.09006 * 109.47197 * 145.00350 * 9 8 7 33 33 H 1.09002 * 109.47400 * 300.00149 * 13 12 10 34 34 H 1.09003 * 109.46811 * 60.00247 * 13 12 10 35 35 H 1.09001 * 109.47412 * 300.00555 * 14 13 12 36 36 H 1.09003 * 109.47168 * 59.99542 * 14 13 12 37 37 H 1.08998 * 109.46774 * 299.99915 * 15 14 13 38 38 H 1.09003 * 109.46874 * 60.00115 * 15 14 13 39 39 H 0.97005 * 120.00307 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9207 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0017 8 6 3.4311 1.2849 -0.0007 9 6 4.2537 0.0223 -0.0002 10 6 4.4238 -0.4671 -1.4154 11 8 3.9275 0.1463 -2.3304 12 8 5.1266 -1.5843 -1.6592 13 6 5.2488 -1.9967 -3.0461 14 6 6.0770 -3.2806 -3.1254 15 6 6.2062 -3.7148 -4.5868 16 6 7.0226 -4.9792 -4.6649 17 1 7.4101 -5.4284 -3.7624 18 6 7.2738 -5.5630 -5.8884 19 7 6.8016 -5.0163 -6.9873 20 14 8.2851 -7.1307 -5.9852 21 1 7.3847 -8.3074 -5.8875 22 1 9.0135 -7.1707 -7.2786 23 1 9.2612 -7.1599 -4.8663 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.2128 2.3203 -0.0010 28 1 1.3339 4.5114 0.0026 29 1 3.7920 4.6381 -0.0024 30 1 5.1344 2.5754 -0.0023 31 1 5.2326 0.2265 0.4336 32 1 3.7469 -0.7414 0.5899 33 1 4.2569 -2.1785 -3.4599 34 1 5.7420 -1.2099 -3.6170 35 1 7.0689 -3.0994 -2.7115 36 1 5.5834 -4.0672 -2.5546 37 1 5.2144 -3.8961 -5.0010 38 1 6.7001 -2.9281 -5.1572 39 1 6.9780 -5.4273 -7.8481 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914616944.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:38 Heat of formation + Delta-G solvation = -117.195922 kcal Electronic energy + Delta-G solvation = -20621.002611 eV Core-core repulsion = 17300.583611 eV Total energy + Delta-G solvation = -3320.419000 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.71011 -39.77130 -37.62924 -36.32614 -33.94515 -33.19855 -31.64738 -30.35764 -28.55710 -27.43907 -26.70423 -23.45420 -22.37896 -22.15372 -20.50940 -20.20024 -18.21825 -17.39457 -16.70856 -16.49017 -16.10917 -15.99423 -15.85788 -15.38809 -14.68112 -14.45267 -14.28607 -13.79353 -13.40979 -13.15904 -12.63096 -12.55074 -12.26941 -12.13854 -11.91152 -11.79162 -11.53617 -11.34611 -11.09245 -10.94412 -10.62880 -10.58114 -10.30581 -10.26068 -9.66830 -9.48614 -9.15175 -9.07978 -8.36665 -8.36616 -6.01384 -4.04339 1.04802 1.24251 2.50397 3.01051 3.05368 3.32459 3.38463 3.42178 3.64805 4.40419 4.45466 4.55542 4.71541 4.84720 4.91660 5.00684 5.06012 5.18717 5.25673 5.29805 5.33389 5.34513 5.51427 5.64810 5.70752 5.78064 6.07142 6.08597 6.18083 6.30173 6.53729 6.59224 6.60415 6.93079 7.04243 7.15442 7.63284 7.74723 7.97146 8.08346 8.38747 9.02050 9.59815 11.10106 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034760 B = 0.002742 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.325270 B =10207.448988 C =10489.519518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.313 6.313 3 C 0.146 3.854 4 C -0.210 4.210 5 C -0.079 4.079 6 C -0.158 4.158 7 C -0.067 4.067 8 C -0.106 4.106 9 C -0.066 4.066 10 C 0.460 3.540 11 O -0.506 6.506 12 O -0.360 6.360 13 C 0.069 3.931 14 C -0.109 4.109 15 C 0.024 3.976 16 C -0.521 4.521 17 H 0.058 0.942 18 C 0.056 3.944 19 N -0.895 5.895 20 Si 0.895 3.105 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 H 0.056 0.944 25 H 0.101 0.899 26 H 0.055 0.945 27 H 0.128 0.872 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.130 0.870 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.277 16.243 17.950 26.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.226 6.226 3 C 0.100 3.900 4 C -0.228 4.228 5 C -0.097 4.097 6 C -0.176 4.176 7 C -0.085 4.085 8 C -0.107 4.107 9 C -0.104 4.104 10 C 0.302 3.698 11 O -0.394 6.394 12 O -0.277 6.277 13 C -0.004 4.004 14 C -0.146 4.146 15 C -0.013 4.013 16 C -0.559 4.559 17 H 0.076 0.924 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.723 3.277 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.198 1.198 24 H 0.074 0.926 25 H 0.119 0.881 26 H 0.073 0.927 27 H 0.146 0.854 28 H 0.142 0.858 29 H 0.143 0.857 30 H 0.148 0.852 31 H 0.130 0.870 32 H 0.133 0.867 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.337 16.172 17.441 26.349 hybrid contribution 0.154 -0.646 -0.430 0.791 sum -11.183 15.526 17.011 25.603 Atomic orbital electron populations 1.23073 0.78213 1.04172 1.01243 1.86083 1.21525 1.26742 1.88279 1.18796 0.91628 0.84424 0.95144 1.21189 0.99985 0.92310 1.09343 1.20940 0.94733 0.96894 0.97106 1.21009 0.93910 0.98306 1.04393 1.20894 1.00018 0.90943 0.96598 1.18662 0.90300 0.94575 1.07172 1.20094 1.02053 0.96053 0.92179 1.23422 0.75435 0.78865 0.92046 1.90654 1.45559 1.56415 1.46788 1.86486 1.66635 1.41035 1.33509 1.23460 1.01387 0.98388 0.77152 1.21755 0.98260 0.92796 1.01818 1.19053 0.97496 0.96472 0.88323 1.21182 1.32951 1.08960 0.92800 0.92418 1.25033 0.96056 0.97636 0.95779 1.69970 1.45618 1.39923 0.97909 0.86545 0.80286 0.83467 0.77424 1.20623 1.21205 1.19802 0.92550 0.88072 0.92675 0.85427 0.85820 0.85744 0.85205 0.86958 0.86661 0.91677 0.91652 0.92171 0.92170 0.96271 0.96251 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -3.77 9.63 -19.42 -0.19 -3.96 16 3 C 0.15 1.77 6.66 -39.22 -0.26 1.51 16 4 C -0.21 -2.12 9.04 -39.43 -0.36 -2.47 16 5 C -0.08 -0.72 10.04 -39.60 -0.40 -1.12 16 6 C -0.16 -1.48 10.04 -39.56 -0.40 -1.88 16 7 C -0.07 -0.70 9.68 -39.61 -0.38 -1.08 16 8 C -0.11 -1.29 4.39 -104.48 -0.46 -1.75 16 9 C -0.07 -0.78 5.66 -29.04 -0.16 -0.95 16 10 C 0.46 7.51 7.95 36.00 0.29 7.79 16 11 O -0.51 -9.79 15.78 -18.74 -0.30 -10.09 16 12 O -0.36 -6.36 10.22 -39.25 -0.40 -6.76 16 13 C 0.07 1.35 5.47 37.15 0.20 1.55 16 14 C -0.11 -2.33 5.53 -26.74 -0.15 -2.48 16 15 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 16 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 17 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 20 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 23 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 24 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 25 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 27 H 0.13 1.00 6.30 -52.49 -0.33 0.66 16 28 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 29 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 30 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 31 H 0.11 1.00 8.05 -51.93 -0.42 0.59 16 32 H 0.12 1.24 7.69 -51.93 -0.40 0.84 16 33 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 34 H 0.07 1.28 8.13 -51.93 -0.42 0.86 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 338.17 15.07 5.10 5.10 Total: -1.00 -34.03 338.17 -7.42 -41.45 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -5.71 Total: -3.20 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -1.64 Total: -12.85 kcal Atomic # 7 Polarization: -27.17 SS G_CDS: 0.74 Total: -26.43 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.88 Total: -20.80 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.03 -7.42 -41.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914616944.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.748 kcal (2) G-P(sol) polarization free energy of solvation -34.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds