Wall clock time and date at job start Mon Mar 30 2020 23:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99817 * 2 1 4 4 C 1.38754 * 120.05719 * 359.95522 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05494 * 359.94904 * 7 6 5 9 9 C 1.50694 * 120.02852 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47497 * 265.00833 * 9 8 7 11 11 O 1.20819 * 119.99949 * 359.97438 * 10 9 8 12 12 O 1.34228 * 119.99841 * 179.97438 * 10 9 8 13 13 C 1.45205 * 116.99916 * 179.97438 * 12 10 9 14 14 C 1.52992 * 109.47474 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47577 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.47329 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99977 * 0.02562 * 16 15 14 18 18 C 1.37869 * 119.99909 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00283 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00050 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47166 * 90.00208 * 20 18 16 22 22 H 1.48497 * 109.47077 * 210.00110 * 20 18 16 23 23 H 1.48504 * 109.46889 * 329.99998 * 20 18 16 24 24 H 1.09000 * 109.47023 * 60.00240 * 1 2 3 25 25 H 1.09002 * 109.46809 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47655 * 300.00222 * 1 2 3 27 27 H 1.08002 * 120.02758 * 0.04150 * 4 3 2 28 28 H 1.07997 * 119.97891 * 180.29657 * 5 4 3 29 29 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 30 30 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 31 31 H 1.09004 * 109.47092 * 25.00582 * 9 8 7 32 32 H 1.09006 * 109.47197 * 145.00350 * 9 8 7 33 33 H 1.09002 * 109.47400 * 300.00149 * 13 12 10 34 34 H 1.09003 * 109.46811 * 60.00247 * 13 12 10 35 35 H 1.09001 * 109.47412 * 300.00555 * 14 13 12 36 36 H 1.09003 * 109.47168 * 59.99542 * 14 13 12 37 37 H 1.08998 * 109.46774 * 299.99915 * 15 14 13 38 38 H 1.09003 * 109.46874 * 60.00115 * 15 14 13 39 39 H 0.97005 * 120.00307 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9207 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0017 8 6 3.4311 1.2849 -0.0007 9 6 4.2537 0.0223 -0.0002 10 6 4.4238 -0.4671 -1.4154 11 8 3.9275 0.1463 -2.3304 12 8 5.1266 -1.5843 -1.6592 13 6 5.2488 -1.9967 -3.0461 14 6 6.0770 -3.2806 -3.1254 15 6 6.2062 -3.7148 -4.5868 16 6 7.0226 -4.9792 -4.6649 17 1 7.4101 -5.4284 -3.7624 18 6 7.2738 -5.5630 -5.8884 19 7 6.8016 -5.0163 -6.9873 20 14 8.2851 -7.1307 -5.9852 21 1 7.3847 -8.3074 -5.8875 22 1 9.0135 -7.1707 -7.2786 23 1 9.2612 -7.1599 -4.8663 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.2128 2.3203 -0.0010 28 1 1.3339 4.5114 0.0026 29 1 3.7920 4.6381 -0.0024 30 1 5.1344 2.5754 -0.0023 31 1 5.2326 0.2265 0.4336 32 1 3.7469 -0.7414 0.5899 33 1 4.2569 -2.1785 -3.4599 34 1 5.7420 -1.2099 -3.6170 35 1 7.0689 -3.0994 -2.7115 36 1 5.5834 -4.0672 -2.5546 37 1 5.2144 -3.8961 -5.0010 38 1 6.7001 -2.9281 -5.1572 39 1 6.9780 -5.4273 -7.8481 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914616944.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:38 Heat of formation + Delta-G solvation = -136.416789 kcal Electronic energy + Delta-G solvation = -20621.836090 eV Core-core repulsion = 17300.583611 eV Total energy + Delta-G solvation = -3321.252480 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.74223 -40.87013 -38.41757 -37.74625 -35.93273 -34.13828 -33.60291 -31.08440 -29.68247 -28.61456 -27.94166 -25.27902 -23.27094 -23.07001 -22.17062 -21.56722 -18.97569 -18.82587 -18.42321 -17.84702 -17.31634 -17.09737 -16.62476 -16.50960 -16.34751 -15.72510 -15.36712 -14.72933 -14.67209 -14.19358 -14.08496 -13.94455 -13.72398 -13.39837 -13.12693 -12.89284 -12.81299 -12.51345 -12.38641 -12.29633 -12.06850 -12.02579 -11.80651 -11.78134 -11.42045 -11.41204 -11.22813 -10.57948 -9.86484 -9.13735 -8.22142 -6.34040 0.27129 0.48775 1.21389 1.41315 1.43150 1.54391 1.75654 2.36219 2.41400 2.83748 3.11605 3.57085 3.83593 3.87420 3.98468 4.06585 4.07329 4.23317 4.31841 4.35609 4.40110 4.43205 4.50907 4.60160 4.69503 4.78549 4.79044 4.87029 5.04973 5.07282 5.34955 5.43379 5.45565 5.54286 5.57357 5.62565 5.79319 5.85830 6.18468 6.41720 6.74505 6.82180 7.35596 8.90238 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034760 B = 0.002742 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.325270 B =10207.448988 C =10489.519518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.338 6.338 3 C 0.123 3.877 4 C -0.219 4.219 5 C -0.080 4.080 6 C -0.164 4.164 7 C -0.077 4.077 8 C -0.134 4.134 9 C -0.057 4.057 10 C 0.458 3.542 11 O -0.540 6.540 12 O -0.359 6.359 13 C 0.079 3.921 14 C -0.093 4.093 15 C 0.026 3.974 16 C -0.543 4.543 17 H 0.066 0.934 18 C -0.002 4.002 19 N -0.935 5.935 20 Si 0.970 3.030 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.261 1.261 24 H 0.056 0.944 25 H 0.112 0.888 26 H 0.074 0.926 27 H 0.146 0.854 28 H 0.152 0.848 29 H 0.149 0.851 30 H 0.146 0.854 31 H 0.144 0.856 32 H 0.126 0.874 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.066 0.934 37 H -0.005 1.005 38 H -0.004 1.004 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.005 16.567 19.600 27.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.252 6.252 3 C 0.078 3.922 4 C -0.237 4.237 5 C -0.098 4.098 6 C -0.182 4.182 7 C -0.094 4.094 8 C -0.135 4.135 9 C -0.094 4.094 10 C 0.303 3.697 11 O -0.430 6.430 12 O -0.275 6.275 13 C 0.005 3.995 14 C -0.131 4.131 15 C -0.011 4.011 16 C -0.581 4.581 17 H 0.084 0.916 18 C -0.200 4.200 19 N -0.575 5.575 20 Si 0.794 3.206 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.185 1.185 24 H 0.075 0.925 25 H 0.131 0.869 26 H 0.093 0.907 27 H 0.164 0.836 28 H 0.169 0.831 29 H 0.166 0.834 30 H 0.164 0.836 31 H 0.162 0.838 32 H 0.144 0.856 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.013 0.987 38 H 0.015 0.985 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.073 16.503 19.122 27.579 hybrid contribution -0.015 -0.647 -0.930 1.133 sum -11.088 15.856 18.193 26.558 Atomic orbital electron populations 1.23305 0.76565 1.05328 1.02212 1.86033 1.23432 1.27247 1.88501 1.19116 0.92122 0.85065 0.95943 1.21498 1.01042 0.92168 1.09021 1.21354 0.95107 0.97606 0.95763 1.21385 0.94253 0.99039 1.03519 1.21209 1.01116 0.90866 0.96254 1.18883 0.90671 0.95103 1.08830 1.20216 1.03944 0.96334 0.88867 1.24416 0.73968 0.77659 0.93643 1.90637 1.46859 1.57204 1.48271 1.86484 1.67208 1.42033 1.31810 1.23085 1.00460 0.97450 0.78499 1.21455 0.99235 0.93865 0.98509 1.18935 0.95571 0.95499 0.91124 1.21626 1.33298 1.09807 0.93381 0.91585 1.26034 0.97225 1.01430 0.95301 1.70108 1.46967 1.41790 0.98612 0.85366 0.78682 0.78724 0.77791 1.19693 1.20769 1.18466 0.92507 0.86937 0.90709 0.83629 0.83071 0.83354 0.83618 0.83846 0.85635 0.92509 0.92082 0.91285 0.91497 0.98681 0.98529 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.41 16 2 O -0.34 -8.06 9.63 -92.39 -0.89 -8.95 16 3 C 0.12 2.91 6.66 22.51 0.15 3.06 16 4 C -0.22 -4.14 9.04 22.37 0.20 -3.93 16 5 C -0.08 -1.30 10.04 22.26 0.22 -1.08 16 6 C -0.16 -2.73 10.04 22.28 0.22 -2.51 16 7 C -0.08 -1.50 9.68 22.25 0.22 -1.28 16 8 C -0.13 -3.14 4.39 -19.77 -0.09 -3.22 16 9 C -0.06 -1.27 5.66 29.10 0.16 -1.11 16 10 C 0.46 14.82 7.95 71.23 0.57 15.39 16 11 O -0.54 -21.14 15.78 21.98 0.35 -20.79 16 12 O -0.36 -12.50 10.22 -51.40 -0.53 -13.02 16 13 C 0.08 3.11 5.47 71.98 0.39 3.50 16 14 C -0.09 -4.00 5.53 30.59 0.17 -3.83 16 15 C 0.03 1.40 4.97 29.85 0.15 1.55 16 16 C -0.54 -31.23 9.11 25.60 0.23 -30.99 16 17 H 0.07 3.60 7.74 -2.91 -0.02 3.57 16 18 C 0.00 -0.13 5.46 84.65 0.46 0.34 16 19 N -0.93 -57.63 13.29 21.44 0.28 -57.35 16 20 Si 0.97 44.42 29.54 68.60 2.03 46.44 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 24 H 0.06 0.82 7.66 -2.39 -0.02 0.80 16 25 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.07 0.79 7.66 -2.39 -0.02 0.77 16 27 H 0.15 2.04 6.30 -2.91 -0.02 2.02 16 28 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 29 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 30 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 31 H 0.14 2.25 8.05 -2.38 -0.02 2.23 16 32 H 0.13 2.56 7.69 -2.38 -0.02 2.54 16 33 H 0.06 2.32 8.13 -2.39 -0.02 2.30 16 34 H 0.06 2.44 8.13 -2.39 -0.02 2.43 16 35 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 36 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 37 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 38 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 39 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 Total: -1.00 -73.84 338.17 6.45 -67.39 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: 1.03 Total: 8.99 kcal Atomic # 6 Polarization: -26.89 SS G_CDS: 4.18 Total: -22.71 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: 0.28 Total: -57.35 kcal Atomic # 8 Polarization: -41.70 SS G_CDS: -1.07 Total: -42.76 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -73.84 6.45 -67.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914616944.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.024 kcal (2) G-P(sol) polarization free energy of solvation -73.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds