Wall clock time and date at job start Mon Mar 30 2020 23:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 113.99688 * 2 1 4 4 C 1.50702 * 109.46603 * 180.02562 * 3 2 1 5 5 C 1.37961 * 120.07872 * 359.97438 * 4 3 2 6 6 C 1.38346 * 120.15092 * 179.72452 * 5 4 3 7 7 C 1.38395 * 120.30408 * 0.27977 * 6 5 4 8 8 C 1.37923 * 120.14635 * 0.02562 * 7 6 5 9 9 C 1.39617 * 120.07508 * 180.29360 * 4 3 2 10 10 C 1.47723 * 120.14891 * 359.97438 * 9 4 3 11 11 O 1.21464 * 120.00279 * 0.27890 * 10 9 4 12 12 O 1.34708 * 119.99791 * 180.27434 * 10 9 4 13 13 C 1.45206 * 116.99912 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47143 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.47066 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47055 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99885 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00002 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99975 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 119.99922 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47495 * 89.99778 * 20 18 16 22 22 H 1.48495 * 109.47153 * 209.99952 * 20 18 16 23 23 H 1.48498 * 109.47064 * 329.99817 * 20 18 16 24 24 H 1.09001 * 109.47215 * 59.99948 * 1 2 3 25 25 H 1.08998 * 109.47112 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47171 * 300.00356 * 1 2 3 27 27 H 1.08991 * 109.47577 * 60.00219 * 3 2 1 28 28 H 1.09005 * 109.47129 * 299.99756 * 3 2 1 29 29 H 1.08002 * 119.92687 * 0.02562 * 5 4 3 30 30 H 1.07997 * 119.85023 * 180.25898 * 6 5 4 31 31 H 1.07999 * 119.92551 * 179.97438 * 7 6 5 32 32 H 1.08003 * 120.07249 * 180.02562 * 8 7 6 33 33 H 1.08998 * 109.47154 * 300.00336 * 13 12 10 34 34 H 1.08999 * 109.47094 * 60.00023 * 13 12 10 35 35 H 1.08996 * 109.46707 * 300.00164 * 14 13 12 36 36 H 1.08996 * 109.46764 * 59.99873 * 14 13 12 37 37 H 1.08998 * 109.47112 * 300.00068 * 15 14 13 38 38 H 1.08999 * 109.47213 * 59.99802 * 15 14 13 39 39 H 0.96994 * 120.00040 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.1075 -0.0583 -0.0006 6 6 5.4864 -0.1693 -0.0069 7 6 6.2784 0.9656 -0.0075 8 6 5.6967 2.2162 -0.0013 9 6 4.3054 2.3356 0.0054 10 6 3.6754 3.6717 0.0119 11 8 2.4649 3.7724 0.0171 12 8 4.4433 4.7784 0.0122 13 6 3.7562 6.0576 0.0193 14 6 4.7856 7.1895 0.0179 15 6 4.0616 8.5374 0.0261 16 6 5.0755 9.6523 0.0253 17 1 6.1308 9.4225 0.0200 18 6 4.6559 10.9657 0.0314 19 7 5.5408 11.9386 0.0312 20 14 2.8308 11.3630 0.0413 21 1 2.3537 11.4640 1.4440 22 1 2.6017 12.6552 -0.6536 23 1 2.0858 10.2858 -0.6586 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.6886 1.8464 0.8899 28 1 1.6885 1.8464 -0.8900 29 1 3.4953 -0.9481 -0.0005 30 1 5.9471 -1.1461 -0.0111 31 1 7.3543 0.8718 -0.0121 32 1 6.3159 3.1011 -0.0022 33 1 3.1277 6.1374 -0.8676 34 1 3.1355 6.1316 0.9123 35 1 5.4144 7.1099 0.9047 36 1 5.4060 7.1153 -0.8752 37 1 3.4325 8.6172 -0.8605 38 1 3.4415 8.6113 0.9194 39 1 5.2457 12.8626 0.0351 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914942392.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:42 Heat of formation + Delta-G solvation = -117.996111 kcal Electronic energy + Delta-G solvation = -20636.609758 eV Core-core repulsion = 17316.156059 eV Total energy + Delta-G solvation = -3320.453699 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.73851 -39.14461 -37.75099 -36.55442 -34.11438 -32.27359 -32.02211 -31.41804 -27.87784 -27.44963 -25.71994 -24.40367 -22.92113 -21.72991 -20.85029 -20.22065 -17.94428 -17.15054 -16.67126 -16.56975 -16.53635 -16.12320 -15.98969 -14.94210 -14.66209 -14.48511 -14.33080 -14.16513 -13.35172 -13.17898 -12.84195 -12.76260 -12.40502 -12.31971 -12.02359 -11.93694 -11.67319 -11.35759 -11.08307 -10.97997 -10.48848 -10.41744 -10.09291 -10.01225 -9.82896 -9.74415 -9.27328 -9.26793 -8.99036 -8.58394 -6.08610 -4.07747 0.49208 1.08207 2.49079 2.73618 3.28472 3.36186 3.39350 3.39703 3.52587 4.41422 4.46961 4.59943 4.73393 4.77036 5.02916 5.08791 5.15269 5.24637 5.24885 5.33679 5.36193 5.40155 5.42987 5.44156 5.53813 5.77804 5.82731 6.00678 6.07280 6.17065 6.34119 6.36428 6.57721 6.62224 6.76932 6.88592 7.18776 7.30231 7.69944 7.80137 8.48024 8.95620 9.52841 11.04592 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024775 B = 0.003187 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.878541 B = 8784.520472 C = 9878.040844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.397 6.397 3 C 0.103 3.897 4 C -0.026 4.026 5 C -0.114 4.114 6 C -0.087 4.087 7 C -0.136 4.136 8 C -0.058 4.058 9 C -0.122 4.122 10 C 0.503 3.497 11 O -0.512 6.512 12 O -0.349 6.349 13 C 0.067 3.933 14 C -0.102 4.102 15 C -0.010 4.010 16 C -0.522 4.522 17 H 0.074 0.926 18 C 0.067 3.933 19 N -0.901 5.901 20 Si 0.880 3.120 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.265 1.265 24 H 0.043 0.957 25 H 0.086 0.914 26 H 0.043 0.957 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.141 0.859 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.144 0.856 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.019 0.981 38 H 0.015 0.985 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.515 -26.689 -0.110 27.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.316 6.316 3 C 0.027 3.973 4 C -0.027 4.027 5 C -0.132 4.132 6 C -0.105 4.105 7 C -0.154 4.154 8 C -0.076 4.076 9 C -0.124 4.124 10 C 0.349 3.651 11 O -0.403 6.403 12 O -0.266 6.266 13 C -0.006 4.006 14 C -0.139 4.139 15 C -0.048 4.048 16 C -0.560 4.560 17 H 0.092 0.908 18 C -0.134 4.134 19 N -0.540 5.540 20 Si 0.707 3.293 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.190 1.190 24 H 0.061 0.939 25 H 0.104 0.896 26 H 0.061 0.939 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.158 0.842 30 H 0.147 0.853 31 H 0.150 0.850 32 H 0.161 0.839 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.037 0.963 38 H 0.033 0.967 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.740 -26.559 -0.111 26.978 hybrid contribution -1.222 0.751 0.026 1.435 sum -5.962 -25.807 -0.084 26.487 Atomic orbital electron populations 1.22715 0.80474 1.02605 1.00407 1.87752 1.20090 1.28121 1.95673 1.21471 0.89063 0.83968 1.02771 1.19762 0.94559 0.92322 0.96031 1.20965 0.94627 0.97210 1.00396 1.21473 0.93713 0.99015 0.96304 1.21216 1.00530 0.92072 1.01545 1.21516 0.93103 0.98858 0.94139 1.18952 0.94126 0.89505 1.09783 1.21138 0.85353 0.85563 0.73048 1.90787 1.15255 1.87891 1.46333 1.86543 1.41320 1.15528 1.83171 1.23536 0.96458 0.78425 1.02183 1.21568 0.97268 0.92211 1.02880 1.19518 0.96738 0.91847 0.96674 1.21053 0.94293 0.89413 1.51234 0.90781 1.25016 0.97616 0.96324 0.94453 1.69906 1.33728 0.99555 1.50818 0.86781 0.86032 0.77915 0.78601 1.20200 1.21268 1.18990 0.93869 0.89579 0.93872 0.90444 0.90508 0.84158 0.85286 0.85001 0.83868 0.91411 0.91411 0.91484 0.91455 0.96274 0.96712 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.40 -4.30 9.18 -35.23 -0.32 -4.63 16 3 C 0.10 1.23 4.58 36.01 0.16 1.39 16 4 C -0.03 -0.31 5.92 -104.21 -0.62 -0.93 16 5 C -0.11 -1.13 9.37 -39.64 -0.37 -1.50 16 6 C -0.09 -0.72 10.04 -39.48 -0.40 -1.11 16 7 C -0.14 -1.17 10.03 -39.64 -0.40 -1.57 16 8 C -0.06 -0.63 9.62 -39.17 -0.38 -1.00 16 9 C -0.12 -1.57 5.87 -104.98 -0.62 -2.19 16 10 C 0.50 7.69 7.88 34.61 0.27 7.97 16 11 O -0.51 -8.53 13.20 -19.24 -0.25 -8.79 16 12 O -0.35 -5.63 9.47 -40.52 -0.38 -6.02 16 13 C 0.07 1.15 5.48 37.16 0.20 1.36 16 14 C -0.10 -2.00 5.53 -26.73 -0.15 -2.14 16 15 C -0.01 -0.24 4.04 -27.88 -0.11 -0.36 16 16 C -0.52 -14.78 9.66 -34.44 -0.33 -15.12 16 17 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 18 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 19 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 20 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 24 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.08 0.98 7.32 -51.93 -0.38 0.60 16 28 H 0.08 0.97 7.37 -51.93 -0.38 0.59 16 29 H 0.14 1.27 7.00 -52.49 -0.37 0.90 16 30 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 31 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.14 1.47 7.61 -52.48 -0.40 1.07 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 38 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 39 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 331.99 15.07 5.00 5.00 Total: -1.00 -31.81 331.99 -7.25 -39.07 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -5.69 Total: -2.70 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -1.71 Total: -11.96 kcal Atomic # 7 Polarization: -27.69 SS G_CDS: 0.77 Total: -26.92 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.96 Total: -19.43 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.81 -7.25 -39.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914942392.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.928 kcal (2) G-P(sol) polarization free energy of solvation -31.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds