Wall clock time and date at job start Mon Mar 30 2020 23:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 113.99688 * 2 1 4 4 C 1.50702 * 109.46603 * 180.02562 * 3 2 1 5 5 C 1.37961 * 120.07872 * 359.97438 * 4 3 2 6 6 C 1.38346 * 120.15092 * 179.72452 * 5 4 3 7 7 C 1.38395 * 120.30408 * 0.27977 * 6 5 4 8 8 C 1.37923 * 120.14635 * 0.02562 * 7 6 5 9 9 C 1.39617 * 120.07508 * 180.29360 * 4 3 2 10 10 C 1.47723 * 120.14891 * 359.97438 * 9 4 3 11 11 O 1.21464 * 120.00279 * 0.27890 * 10 9 4 12 12 O 1.34708 * 119.99791 * 180.27434 * 10 9 4 13 13 C 1.45206 * 116.99912 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47143 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.47066 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47055 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99885 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00002 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99975 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 119.99922 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47495 * 89.99778 * 20 18 16 22 22 H 1.48495 * 109.47153 * 209.99952 * 20 18 16 23 23 H 1.48498 * 109.47064 * 329.99817 * 20 18 16 24 24 H 1.09001 * 109.47215 * 59.99948 * 1 2 3 25 25 H 1.08998 * 109.47112 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47171 * 300.00356 * 1 2 3 27 27 H 1.08991 * 109.47577 * 60.00219 * 3 2 1 28 28 H 1.09005 * 109.47129 * 299.99756 * 3 2 1 29 29 H 1.08002 * 119.92687 * 0.02562 * 5 4 3 30 30 H 1.07997 * 119.85023 * 180.25898 * 6 5 4 31 31 H 1.07999 * 119.92551 * 179.97438 * 7 6 5 32 32 H 1.08003 * 120.07249 * 180.02562 * 8 7 6 33 33 H 1.08998 * 109.47154 * 300.00336 * 13 12 10 34 34 H 1.08999 * 109.47094 * 60.00023 * 13 12 10 35 35 H 1.08996 * 109.46707 * 300.00164 * 14 13 12 36 36 H 1.08996 * 109.46764 * 59.99873 * 14 13 12 37 37 H 1.08998 * 109.47112 * 300.00068 * 15 14 13 38 38 H 1.08999 * 109.47213 * 59.99802 * 15 14 13 39 39 H 0.96994 * 120.00040 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.1075 -0.0583 -0.0006 6 6 5.4864 -0.1693 -0.0069 7 6 6.2784 0.9656 -0.0075 8 6 5.6967 2.2162 -0.0013 9 6 4.3054 2.3356 0.0054 10 6 3.6754 3.6717 0.0119 11 8 2.4649 3.7724 0.0171 12 8 4.4433 4.7784 0.0122 13 6 3.7562 6.0576 0.0193 14 6 4.7856 7.1895 0.0179 15 6 4.0616 8.5374 0.0261 16 6 5.0755 9.6523 0.0253 17 1 6.1308 9.4225 0.0200 18 6 4.6559 10.9657 0.0314 19 7 5.5408 11.9386 0.0312 20 14 2.8308 11.3630 0.0413 21 1 2.3537 11.4640 1.4440 22 1 2.6017 12.6552 -0.6536 23 1 2.0858 10.2858 -0.6586 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.6886 1.8464 0.8899 28 1 1.6885 1.8464 -0.8900 29 1 3.4953 -0.9481 -0.0005 30 1 5.9471 -1.1461 -0.0111 31 1 7.3543 0.8718 -0.0121 32 1 6.3159 3.1011 -0.0022 33 1 3.1277 6.1374 -0.8676 34 1 3.1355 6.1316 0.9123 35 1 5.4144 7.1099 0.9047 36 1 5.4060 7.1153 -0.8752 37 1 3.4325 8.6172 -0.8605 38 1 3.4415 8.6113 0.9194 39 1 5.2457 12.8626 0.0351 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914942392.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:42 Heat of formation + Delta-G solvation = -136.114409 kcal Electronic energy + Delta-G solvation = -20637.395426 eV Core-core repulsion = 17316.156059 eV Total energy + Delta-G solvation = -3321.239367 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.82777 -40.09805 -38.53872 -37.83217 -35.95899 -33.92379 -33.06770 -32.39104 -29.49569 -28.35664 -26.55763 -25.58848 -24.37639 -22.67003 -22.14842 -21.69077 -19.04312 -18.97555 -18.00154 -17.76957 -17.39727 -17.03793 -16.89842 -16.31870 -15.75207 -15.65412 -15.45106 -15.34623 -14.81413 -14.36155 -14.33004 -13.80984 -13.74379 -13.59623 -13.15839 -12.87136 -12.77203 -12.62346 -12.52848 -12.09213 -12.07984 -11.96690 -11.77548 -11.43230 -11.38295 -11.28425 -10.88084 -10.78600 -10.07650 -9.78862 -8.31262 -6.36322 -0.39045 0.31491 1.36035 1.37531 1.44655 1.49178 1.54557 2.34735 2.61594 2.71249 3.03906 3.51631 3.70833 3.95458 3.98063 3.99938 4.10512 4.30284 4.34428 4.34717 4.39136 4.47874 4.53536 4.57886 4.67569 4.72042 4.79384 4.81991 4.94085 5.02834 5.21725 5.27696 5.37620 5.45511 5.47150 5.48364 5.60992 5.86742 6.09063 6.24617 6.58766 6.71669 7.28214 8.85347 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024775 B = 0.003187 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.878541 B = 8784.520472 C = 9878.040844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.110 3.890 4 C -0.043 4.043 5 C -0.117 4.117 6 C -0.072 4.072 7 C -0.129 4.129 8 C -0.065 4.065 9 C -0.145 4.145 10 C 0.501 3.499 11 O -0.532 6.532 12 O -0.352 6.352 13 C 0.076 3.924 14 C -0.092 4.092 15 C -0.009 4.009 16 C -0.534 4.534 17 H 0.036 0.964 18 C 0.005 3.995 19 N -0.949 5.949 20 Si 0.950 3.050 21 H -0.266 1.266 22 H -0.283 1.283 23 H -0.246 1.246 24 H 0.045 0.955 25 H 0.109 0.891 26 H 0.045 0.955 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.150 0.850 30 H 0.166 0.834 31 H 0.163 0.837 32 H 0.144 0.856 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.025 0.975 38 H 0.024 0.976 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.269 -29.163 -0.101 29.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.323 6.323 3 C 0.034 3.966 4 C -0.043 4.043 5 C -0.135 4.135 6 C -0.090 4.090 7 C -0.147 4.147 8 C -0.084 4.084 9 C -0.147 4.147 10 C 0.348 3.652 11 O -0.424 6.424 12 O -0.269 6.269 13 C 0.002 3.998 14 C -0.130 4.130 15 C -0.046 4.046 16 C -0.572 4.572 17 H 0.054 0.946 18 C -0.192 4.192 19 N -0.590 5.590 20 Si 0.773 3.227 21 H -0.191 1.191 22 H -0.209 1.209 23 H -0.170 1.170 24 H 0.063 0.937 25 H 0.127 0.873 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.168 0.832 30 H 0.184 0.816 31 H 0.181 0.819 32 H 0.162 0.838 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.044 0.956 38 H 0.043 0.957 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.492 -29.063 -0.101 29.578 hybrid contribution -0.870 1.403 0.023 1.651 sum -6.363 -27.660 -0.078 28.383 Atomic orbital electron populations 1.22936 0.79121 1.04230 1.00629 1.87732 1.21601 1.27318 1.95655 1.21258 0.89633 0.84284 1.01408 1.19878 0.94422 0.92984 0.97008 1.21170 0.95749 0.96511 1.00086 1.21907 0.92871 1.00595 0.93622 1.21589 1.02185 0.91067 0.99862 1.21667 0.92235 1.00200 0.94255 1.18933 0.95142 0.88170 1.12410 1.21661 0.85239 0.86000 0.72297 1.90770 1.16058 1.88100 1.47485 1.86523 1.41392 1.15419 1.83528 1.23230 0.95421 0.78488 1.02620 1.21322 0.97409 0.91560 1.02662 1.19444 0.95885 0.92103 0.97201 1.21402 0.93785 0.91284 1.50754 0.94577 1.26002 1.03043 0.96111 0.94020 1.70057 1.36395 1.00166 1.52376 0.85664 0.79562 0.78184 0.79307 1.19067 1.20874 1.16966 0.93665 0.87255 0.93677 0.91883 0.91926 0.83248 0.81620 0.81923 0.83820 0.91042 0.90963 0.91751 0.91762 0.95623 0.95734 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.40 -8.44 9.18 -148.98 -1.37 -9.81 16 3 C 0.11 2.65 4.58 71.24 0.33 2.98 16 4 C -0.04 -0.99 5.92 -19.60 -0.12 -1.11 16 5 C -0.12 -2.07 9.37 22.23 0.21 -1.86 16 6 C -0.07 -0.93 10.04 22.33 0.22 -0.70 16 7 C -0.13 -1.82 10.03 22.23 0.22 -1.59 16 8 C -0.07 -1.32 9.62 22.53 0.22 -1.10 16 9 C -0.15 -3.67 5.87 -20.10 -0.12 -3.79 16 10 C 0.50 15.39 7.88 70.33 0.55 15.94 16 11 O -0.53 -18.00 13.20 19.95 0.26 -17.74 16 12 O -0.35 -11.29 9.47 -56.18 -0.53 -11.83 16 13 C 0.08 2.56 5.48 71.98 0.39 2.96 16 14 C -0.09 -3.59 5.53 30.60 0.17 -3.42 16 15 C -0.01 -0.41 4.04 29.85 0.12 -0.29 16 16 C -0.53 -30.82 9.66 25.60 0.25 -30.57 16 17 H 0.04 2.28 7.99 -2.91 -0.02 2.26 16 18 C 0.01 0.31 5.47 84.65 0.46 0.77 16 19 N -0.95 -59.63 13.96 21.45 0.30 -59.34 16 20 Si 0.95 44.13 27.47 68.60 1.88 46.02 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 22 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 23 H -0.25 -10.60 6.54 99.48 0.65 -9.95 16 24 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.06 1.66 7.32 -2.39 -0.02 1.64 16 28 H 0.06 1.65 7.37 -2.38 -0.02 1.63 16 29 H 0.15 2.34 7.00 -2.91 -0.02 2.32 16 30 H 0.17 0.93 8.06 -2.91 -0.02 0.91 16 31 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 32 H 0.14 2.80 7.61 -2.91 -0.02 2.78 16 33 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.03 1.16 7.20 -2.39 -0.02 1.14 16 38 H 0.02 1.09 7.57 -2.39 -0.02 1.07 16 39 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -69.87 331.99 5.68 -64.18 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: 0.97 Total: 8.65 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: 4.16 Total: -20.14 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: 0.30 Total: -59.34 kcal Atomic # 8 Polarization: -37.74 SS G_CDS: -1.64 Total: -39.38 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.88 Total: 46.02 kcal Total: -69.87 5.68 -64.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914942392.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.931 kcal (2) G-P(sol) polarization free energy of solvation -69.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds