Wall clock time and date at job start Mon Mar 30 2020 23:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52990 * 109.47334 * 2 1 4 4 C 1.50701 * 109.46780 * 120.00400 * 2 1 3 5 5 C 1.38286 * 119.97143 * 299.98924 * 4 2 1 6 6 C 1.38247 * 120.11161 * 179.97438 * 5 4 2 7 7 C 1.38168 * 120.05583 * 0.03143 * 6 5 4 8 8 C 1.38715 * 119.94019 * 359.97438 * 7 6 5 9 9 O 1.35907 * 120.04946 * 180.02562 * 8 7 6 10 10 C 1.42897 * 116.99854 * 354.53600 * 9 8 7 11 11 H 1.08988 * 109.47765 * 324.92370 * 10 9 8 12 12 C 1.53002 * 109.47034 * 84.92944 * 10 9 8 13 13 C 1.50700 * 109.46759 * 204.92098 * 10 9 8 14 14 O 1.21212 * 120.00059 * 0.02562 * 13 10 9 15 15 O 1.34316 * 120.00024 * 179.97438 * 13 10 9 16 16 C 1.34926 * 117.00209 * 180.02562 * 15 13 10 17 17 H 1.08006 * 119.99708 * 0.02562 * 16 15 13 18 18 C 1.38743 * 120.00166 * 179.97438 * 16 15 13 19 19 N 1.31442 * 119.99994 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 119.99903 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47513 * 89.99912 * 20 18 16 22 22 H 1.48501 * 109.47042 * 209.99724 * 20 18 16 23 23 H 1.48499 * 109.47345 * 329.99561 * 20 18 16 24 24 C 1.38127 * 119.97222 * 120.29952 * 4 2 1 25 25 H 1.08997 * 109.46768 * 299.99757 * 1 2 3 26 26 H 1.08995 * 109.46784 * 59.99691 * 1 2 3 27 27 H 1.09001 * 109.47155 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47119 * 240.00034 * 2 1 3 29 29 H 1.08999 * 109.47476 * 300.00417 * 3 2 1 30 30 H 1.09004 * 109.46989 * 59.99954 * 3 2 1 31 31 H 1.08998 * 109.47390 * 179.97438 * 3 2 1 32 32 H 1.07996 * 119.94592 * 0.02562 * 5 4 2 33 33 H 1.07998 * 119.96769 * 180.02562 * 6 5 4 34 34 H 1.07998 * 120.03080 * 180.02562 * 7 6 5 35 35 H 1.09001 * 109.47069 * 179.97438 * 12 10 9 36 36 H 1.08996 * 109.46808 * 299.99335 * 12 10 9 37 37 H 1.09002 * 109.47554 * 59.99666 * 12 10 9 38 38 H 0.97004 * 120.00197 * 180.02562 * 19 18 16 39 39 H 1.08000 * 120.02998 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.6980 -0.2375 2.4862 6 6 2.1567 -0.8873 3.6169 7 6 2.9512 -2.0111 3.4948 8 6 3.2880 -2.4875 2.2363 9 8 4.0689 -3.5930 2.1136 10 6 4.6065 -4.1444 3.3173 11 1 4.8392 -3.3389 4.0137 12 6 3.5793 -5.0851 3.9505 13 6 5.8632 -4.9132 3.0002 14 8 6.2595 -4.9817 1.8567 15 8 6.5448 -5.5216 3.9847 16 6 7.6614 -6.1924 3.6329 17 1 7.9702 -6.2219 2.5984 18 6 8.4134 -6.8433 4.6003 19 7 9.5009 -7.4972 4.2574 20 14 7.8796 -6.7916 6.3896 21 1 6.9804 -7.9393 6.6714 22 1 9.0759 -6.8735 7.2656 23 1 7.1582 -5.5210 6.6545 24 6 2.8314 -1.8299 1.1030 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9562 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.0768 0.6406 2.5837 33 1 1.8939 -0.5162 4.5964 34 1 3.3090 -2.5187 4.3783 35 1 3.9895 -5.5061 4.8685 36 1 2.6703 -4.5291 4.1799 37 1 3.3465 -5.8907 3.2541 38 1 10.0264 -7.9527 4.9337 39 1 3.0967 -2.1958 0.1221 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919450456.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:47:31 Heat of formation + Delta-G solvation = -101.613377 kcal Electronic energy + Delta-G solvation = -21167.990674 eV Core-core repulsion = 17848.247384 eV Total energy + Delta-G solvation = -3319.743290 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.48105 -39.27245 -38.02501 -35.42560 -34.92676 -32.49154 -31.98375 -30.20269 -29.26552 -27.36397 -25.92973 -24.35047 -23.18343 -22.57382 -20.67115 -19.45536 -18.08849 -17.85684 -16.85948 -16.15485 -15.77268 -15.49972 -15.06600 -14.89726 -14.43322 -14.17782 -13.82552 -13.63820 -13.61575 -13.17797 -12.74166 -12.55167 -12.45838 -12.29481 -12.14167 -11.92262 -11.70703 -11.47833 -11.32934 -11.23868 -10.94682 -10.85583 -10.64897 -10.50876 -10.39442 -9.76519 -9.15914 -8.86355 -8.73326 -8.14244 -6.41470 -4.18277 1.27382 1.43772 2.86859 3.06102 3.22800 3.29258 3.33494 3.72019 4.16883 4.20571 4.52042 4.65458 4.79803 4.94116 4.97836 5.00053 5.09311 5.14691 5.21420 5.28102 5.38928 5.40174 5.47708 5.59129 5.62894 5.70217 5.76424 5.84837 5.96339 6.01664 6.03092 6.12864 6.28375 6.34317 6.40499 6.55190 6.76731 7.48756 7.64673 7.99348 8.55168 8.95235 9.58649 10.66798 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036691 B = 0.003492 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.948197 B = 8017.469910 C = 8372.719557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.058 4.058 3 C -0.144 4.144 4 C -0.040 4.040 5 C -0.159 4.159 6 C -0.077 4.077 7 C -0.218 4.218 8 C 0.142 3.858 9 O -0.285 6.285 10 C 0.103 3.897 11 H 0.100 0.900 12 C -0.173 4.173 13 C 0.412 3.588 14 O -0.517 6.517 15 O -0.245 6.245 16 C -0.383 4.383 17 H 0.111 0.889 18 C 0.068 3.932 19 N -0.872 5.872 20 Si 0.904 3.096 21 H -0.272 1.272 22 H -0.281 1.281 23 H -0.260 1.260 24 C -0.149 4.149 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.131 0.869 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.280 0.720 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.414 15.099 -1.097 23.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.076 4.076 3 C -0.201 4.201 4 C -0.040 4.040 5 C -0.177 4.177 6 C -0.095 4.095 7 C -0.237 4.237 8 C 0.096 3.904 9 O -0.198 6.198 10 C 0.045 3.955 11 H 0.117 0.883 12 C -0.230 4.230 13 C 0.256 3.744 14 O -0.410 6.410 15 O -0.154 6.154 16 C -0.458 4.458 17 H 0.128 0.872 18 C -0.136 4.136 19 N -0.511 5.511 20 Si 0.729 3.271 21 H -0.197 1.197 22 H -0.206 1.206 23 H -0.184 1.184 24 C -0.168 4.168 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.149 0.851 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -18.049 14.825 -1.497 23.405 hybrid contribution 0.052 -0.146 1.018 1.029 sum -17.998 14.679 -0.479 23.230 Atomic orbital electron populations 1.21846 0.94215 1.02120 1.01827 1.20143 0.95981 0.96084 0.95411 1.21850 1.01489 0.94929 1.01818 1.19602 0.95501 0.94055 0.94861 1.20804 1.03598 1.01502 0.91801 1.20886 0.95848 0.94240 0.98560 1.21367 1.04885 1.00812 0.96591 1.19070 0.90927 0.86453 0.93952 1.86184 1.61581 1.39655 1.32391 1.21513 0.91740 0.96472 0.85726 0.88288 1.22310 0.98270 1.00061 1.02341 1.22236 0.85552 0.81933 0.84722 1.90640 1.68336 1.59974 1.22009 1.83469 1.36661 1.57816 1.37465 1.20653 0.98113 1.28993 0.98046 0.87165 1.24519 0.94491 0.94874 0.99748 1.69602 1.14450 1.31656 1.35391 0.86237 0.78494 0.79698 0.82646 1.19721 1.20629 1.18377 1.20339 1.02148 0.96840 0.97478 0.92430 0.92405 0.92433 0.90221 0.92391 0.92433 0.92351 0.86240 0.85912 0.85085 0.89424 0.91165 0.90749 0.90910 0.85172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.01 37.16 0.33 -0.73 16 2 C -0.06 -0.51 3.09 -91.77 -0.28 -0.79 16 3 C -0.14 -1.12 9.01 37.15 0.33 -0.78 16 4 C -0.04 -0.45 4.78 -104.64 -0.50 -0.95 16 5 C -0.16 -1.66 8.71 -39.56 -0.34 -2.00 16 6 C -0.08 -0.84 10.04 -39.60 -0.40 -1.24 16 7 C -0.22 -2.82 8.24 -39.43 -0.33 -3.15 16 8 C 0.14 2.17 6.60 -39.22 -0.26 1.91 16 9 O -0.29 -5.29 9.33 -39.37 -0.37 -5.66 16 10 C 0.10 1.87 2.75 -27.88 -0.08 1.79 16 11 H 0.10 1.56 6.31 -51.94 -0.33 1.24 16 12 C -0.17 -2.57 9.10 37.16 0.34 -2.23 16 13 C 0.41 10.00 7.28 36.01 0.26 10.26 16 14 O -0.52 -14.50 15.74 -25.78 -0.41 -14.90 16 15 O -0.24 -6.42 8.48 -20.73 -0.18 -6.60 16 16 C -0.38 -11.38 10.10 30.92 0.31 -11.07 16 17 H 0.11 3.64 7.09 -52.48 -0.37 3.27 16 18 C 0.07 1.93 5.49 -17.53 -0.10 1.83 16 19 N -0.87 -25.73 13.96 55.48 0.77 -24.95 16 20 Si 0.90 20.97 28.62 -169.99 -4.86 16.11 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.26 -5.82 7.11 56.52 0.40 -5.42 16 24 C -0.15 -2.05 9.61 -39.43 -0.38 -2.43 16 25 H 0.06 0.40 7.39 -51.93 -0.38 0.02 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.70 7.87 -51.93 -0.41 0.29 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.42 7.39 -51.93 -0.38 0.03 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.12 0.99 7.09 -52.49 -0.37 0.62 16 33 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 34 H 0.13 1.55 5.43 -52.49 -0.28 1.26 16 35 H 0.09 1.27 8.11 -51.93 -0.42 0.84 16 36 H 0.07 0.85 6.91 -51.93 -0.36 0.49 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.13 1.74 7.94 -52.49 -0.42 1.32 16 LS Contribution 329.86 15.07 4.97 4.97 Total: -1.00 -33.18 329.86 -6.55 -39.73 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -5.40 Total: 0.88 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -1.08 Total: -9.58 kcal Atomic # 7 Polarization: -25.73 SS G_CDS: 0.77 Total: -24.95 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.95 Total: -27.16 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.86 Total: 16.11 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.18 -6.55 -39.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919450456.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.886 kcal (2) G-P(sol) polarization free energy of solvation -33.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds