Wall clock time and date at job start Mon Mar 30 2020 23:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52990 * 109.47334 * 2 1 4 4 C 1.50701 * 109.46780 * 120.00400 * 2 1 3 5 5 C 1.38286 * 119.97143 * 299.98924 * 4 2 1 6 6 C 1.38247 * 120.11161 * 179.97438 * 5 4 2 7 7 C 1.38168 * 120.05583 * 0.03143 * 6 5 4 8 8 C 1.38715 * 119.94019 * 359.97438 * 7 6 5 9 9 O 1.35907 * 120.04946 * 180.02562 * 8 7 6 10 10 C 1.42897 * 116.99854 * 354.53600 * 9 8 7 11 11 H 1.08988 * 109.47765 * 324.92370 * 10 9 8 12 12 C 1.53002 * 109.47034 * 84.92944 * 10 9 8 13 13 C 1.50700 * 109.46759 * 204.92098 * 10 9 8 14 14 O 1.21212 * 120.00059 * 0.02562 * 13 10 9 15 15 O 1.34316 * 120.00024 * 179.97438 * 13 10 9 16 16 C 1.34926 * 117.00209 * 180.02562 * 15 13 10 17 17 H 1.08006 * 119.99708 * 0.02562 * 16 15 13 18 18 C 1.38743 * 120.00166 * 179.97438 * 16 15 13 19 19 N 1.31442 * 119.99994 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 119.99903 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47513 * 89.99912 * 20 18 16 22 22 H 1.48501 * 109.47042 * 209.99724 * 20 18 16 23 23 H 1.48499 * 109.47345 * 329.99561 * 20 18 16 24 24 C 1.38127 * 119.97222 * 120.29952 * 4 2 1 25 25 H 1.08997 * 109.46768 * 299.99757 * 1 2 3 26 26 H 1.08995 * 109.46784 * 59.99691 * 1 2 3 27 27 H 1.09001 * 109.47155 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47119 * 240.00034 * 2 1 3 29 29 H 1.08999 * 109.47476 * 300.00417 * 3 2 1 30 30 H 1.09004 * 109.46989 * 59.99954 * 3 2 1 31 31 H 1.08998 * 109.47390 * 179.97438 * 3 2 1 32 32 H 1.07996 * 119.94592 * 0.02562 * 5 4 2 33 33 H 1.07998 * 119.96769 * 180.02562 * 6 5 4 34 34 H 1.07998 * 120.03080 * 180.02562 * 7 6 5 35 35 H 1.09001 * 109.47069 * 179.97438 * 12 10 9 36 36 H 1.08996 * 109.46808 * 299.99335 * 12 10 9 37 37 H 1.09002 * 109.47554 * 59.99666 * 12 10 9 38 38 H 0.97004 * 120.00197 * 180.02562 * 19 18 16 39 39 H 1.08000 * 120.02998 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.6980 -0.2375 2.4862 6 6 2.1567 -0.8873 3.6169 7 6 2.9512 -2.0111 3.4948 8 6 3.2880 -2.4875 2.2363 9 8 4.0689 -3.5930 2.1136 10 6 4.6065 -4.1444 3.3173 11 1 4.8392 -3.3389 4.0137 12 6 3.5793 -5.0851 3.9505 13 6 5.8632 -4.9132 3.0002 14 8 6.2595 -4.9817 1.8567 15 8 6.5448 -5.5216 3.9847 16 6 7.6614 -6.1924 3.6329 17 1 7.9702 -6.2219 2.5984 18 6 8.4134 -6.8433 4.6003 19 7 9.5009 -7.4972 4.2574 20 14 7.8796 -6.7916 6.3896 21 1 6.9804 -7.9393 6.6714 22 1 9.0759 -6.8735 7.2656 23 1 7.1582 -5.5210 6.6545 24 6 2.8314 -1.8299 1.1030 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9562 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.0768 0.6406 2.5837 33 1 1.8939 -0.5162 4.5964 34 1 3.3090 -2.5187 4.3783 35 1 3.9895 -5.5061 4.8685 36 1 2.6703 -4.5291 4.1799 37 1 3.3465 -5.8907 3.2541 38 1 10.0264 -7.9527 4.9337 39 1 3.0967 -2.1958 0.1221 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919450456.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:47:31 Heat of formation + Delta-G solvation = -120.729000 kcal Electronic energy + Delta-G solvation = -21168.819590 eV Core-core repulsion = 17848.247384 eV Total energy + Delta-G solvation = -3320.572206 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.82939 -40.92938 -39.21888 -37.41212 -35.83690 -34.61042 -33.37215 -31.19550 -30.19519 -27.97368 -27.94782 -25.75644 -24.26799 -23.52942 -22.11813 -20.72293 -20.22557 -19.15840 -18.42463 -17.55231 -17.15968 -16.88725 -16.41452 -16.12343 -15.93394 -15.75078 -14.83278 -14.54396 -14.49642 -14.42863 -14.34438 -14.18770 -13.63667 -13.37060 -13.23932 -13.05222 -12.88901 -12.72335 -12.47200 -12.38171 -12.27321 -12.15300 -11.89207 -11.85963 -11.65389 -11.49006 -11.11209 -10.88108 -9.77804 -9.17677 -8.59448 -6.49041 0.36005 0.46707 1.16588 1.29204 1.41873 1.50996 1.61516 2.25858 2.64413 2.79188 2.85585 3.57794 3.73590 3.79319 3.89555 3.98067 4.09103 4.22622 4.33672 4.38218 4.39570 4.56116 4.61844 4.65161 4.74243 4.85301 5.01438 5.02386 5.05575 5.07700 5.22106 5.31332 5.36632 5.38685 5.42407 5.52710 5.67885 5.80003 5.87475 6.34187 6.44024 6.73986 7.43428 8.53423 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036691 B = 0.003492 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.948197 B = 8017.469910 C = 8372.719557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.060 4.060 3 C -0.141 4.141 4 C -0.039 4.039 5 C -0.152 4.152 6 C -0.073 4.073 7 C -0.222 4.222 8 C 0.108 3.892 9 O -0.319 6.319 10 C 0.114 3.886 11 H 0.129 0.871 12 C -0.165 4.165 13 C 0.408 3.592 14 O -0.566 6.566 15 O -0.240 6.240 16 C -0.415 4.415 17 H 0.053 0.947 18 C 0.018 3.982 19 N -0.915 5.915 20 Si 0.985 3.015 21 H -0.255 1.255 22 H -0.265 1.265 23 H -0.243 1.243 24 C -0.172 4.172 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.044 0.956 32 H 0.150 0.850 33 H 0.157 0.843 34 H 0.144 0.856 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.060 0.940 38 H 0.292 0.708 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.272 17.294 1.971 27.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.078 4.078 3 C -0.198 4.198 4 C -0.039 4.039 5 C -0.170 4.170 6 C -0.090 4.090 7 C -0.241 4.241 8 C 0.064 3.936 9 O -0.233 6.233 10 C 0.057 3.943 11 H 0.146 0.854 12 C -0.222 4.222 13 C 0.254 3.746 14 O -0.461 6.461 15 O -0.149 6.149 16 C -0.490 4.490 17 H 0.071 0.929 18 C -0.182 4.182 19 N -0.554 5.554 20 Si 0.804 3.196 21 H -0.179 1.179 22 H -0.189 1.189 23 H -0.166 1.166 24 C -0.191 4.191 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.167 0.833 33 H 0.175 0.825 34 H 0.162 0.838 35 H 0.116 0.884 36 H 0.124 0.876 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -20.917 17.032 1.548 27.019 hybrid contribution 0.907 -0.723 -0.128 1.167 sum -20.011 16.309 1.419 25.854 Atomic orbital electron populations 1.21826 0.92750 1.01956 1.03094 1.20213 0.97110 0.96452 0.94063 1.21839 1.00642 0.94201 1.03129 1.19900 0.94441 0.93033 0.96550 1.21206 1.02796 1.01876 0.91092 1.21304 0.94405 0.93053 1.00285 1.21559 1.05185 1.01606 0.95719 1.19365 0.92155 0.86437 0.95654 1.86126 1.62862 1.41485 1.32846 1.21591 0.89321 0.97118 0.86287 0.85394 1.22326 0.98609 0.99396 1.01891 1.23788 0.86523 0.80502 0.83770 1.90612 1.69865 1.61521 1.24095 1.83467 1.35700 1.58085 1.37670 1.20314 1.00499 1.31934 0.96282 0.92856 1.25643 0.93849 0.93205 1.05538 1.69703 1.15675 1.32033 1.37952 0.85060 0.78958 0.80926 0.74691 1.17928 1.18935 1.16600 1.20490 1.03570 0.98166 0.96840 0.91320 0.91009 0.93315 0.91056 0.90931 0.91308 0.93691 0.83266 0.82529 0.83803 0.88424 0.87561 0.92037 0.89809 0.86548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.01 71.98 0.65 -1.08 16 2 C -0.06 -0.97 3.09 -11.54 -0.04 -1.00 16 3 C -0.14 -1.88 9.01 71.98 0.65 -1.24 16 4 C -0.04 -0.82 4.78 -19.88 -0.10 -0.92 16 5 C -0.15 -2.63 8.71 22.28 0.19 -2.44 16 6 C -0.07 -1.30 10.04 22.26 0.22 -1.07 16 7 C -0.22 -5.18 8.24 22.37 0.18 -5.00 16 8 C 0.11 3.29 6.60 22.51 0.15 3.43 16 9 O -0.32 -12.13 9.33 -73.45 -0.69 -12.81 16 10 C 0.11 4.10 2.75 29.85 0.08 4.18 16 11 H 0.13 3.81 6.31 -2.39 -0.02 3.79 16 12 C -0.17 -4.62 9.10 71.98 0.66 -3.97 16 13 C 0.41 20.56 7.28 71.24 0.52 21.08 16 14 O -0.57 -33.98 15.74 27.20 0.43 -33.55 16 15 O -0.24 -12.86 8.48 14.76 0.13 -12.73 16 16 C -0.41 -25.90 10.10 67.94 0.69 -25.21 16 17 H 0.05 3.84 7.09 -2.91 -0.02 3.82 16 18 C 0.02 1.05 5.49 84.87 0.47 1.51 16 19 N -0.91 -55.42 13.96 21.62 0.30 -55.12 16 20 Si 0.99 42.28 28.62 68.60 1.96 44.25 16 21 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 22 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 23 H -0.24 -9.71 7.11 99.48 0.71 -9.01 16 24 C -0.17 -4.80 9.61 22.37 0.21 -4.59 16 25 H 0.07 0.71 7.39 -2.39 -0.02 0.69 16 26 H 0.07 0.70 8.14 -2.39 -0.02 0.69 16 27 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.07 1.25 7.87 -2.39 -0.02 1.23 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 0.76 7.39 -2.39 -0.02 0.75 16 31 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.15 1.72 7.09 -2.91 -0.02 1.69 16 33 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 34 H 0.14 2.88 5.43 -2.91 -0.02 2.86 16 35 H 0.10 2.55 8.11 -2.39 -0.02 2.53 16 36 H 0.11 2.22 6.91 -2.39 -0.02 2.20 16 37 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.29 15.81 8.31 -92.71 -0.77 15.04 16 39 H 0.12 3.40 7.94 -2.91 -0.02 3.38 16 Total: -1.00 -78.09 329.86 7.72 -70.38 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 1.04 Total: 15.90 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: 4.54 Total: -16.31 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: 0.30 Total: -55.12 kcal Atomic # 8 Polarization: -58.96 SS G_CDS: -0.13 Total: -59.10 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 1.96 Total: 44.25 kcal Total: -78.09 7.72 -70.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919450456.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.353 kcal (2) G-P(sol) polarization free energy of solvation -78.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds