Wall clock time and date at job start Tue Mar 31 2020 00:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 299.99983 * 3 2 1 6 6 H 1.48500 * 109.47000 * 60.00075 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46637 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46983 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.46646 * 55.00200 * 11 10 9 13 13 N 1.46902 * 109.47195 * 295.00537 * 11 10 9 14 14 C 1.46900 * 110.99885 * 155.00130 * 13 11 10 15 15 C 1.53003 * 109.46969 * 179.97438 * 14 13 11 16 16 N 1.46491 * 109.47052 * 179.97438 * 15 14 13 17 17 O 1.21810 * 120.00003 * 45.00302 * 16 15 14 18 18 O 1.21799 * 120.00059 * 224.99392 * 16 15 14 19 19 C 1.50696 * 109.47307 * 174.99742 * 11 10 9 20 20 C 1.38241 * 119.99748 * 79.72867 * 19 11 10 21 21 C 1.38231 * 120.00006 * 179.78971 * 20 19 11 22 22 C 1.38237 * 119.99975 * 0.44300 * 21 20 19 23 23 C 1.38232 * 120.00146 * 359.81024 * 22 21 20 24 24 C 1.38230 * 120.00461 * 260.00562 * 19 11 10 25 25 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 26 26 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 27 27 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 28 28 H 1.09000 * 109.47266 * 299.99671 * 10 9 7 29 29 H 1.08997 * 109.46955 * 60.00501 * 10 9 7 30 30 H 1.00903 * 110.99480 * 278.94812 * 13 11 10 31 31 H 1.09002 * 109.46741 * 299.99560 * 14 13 11 32 32 H 1.08998 * 109.47603 * 59.99327 * 14 13 11 33 33 H 1.09005 * 109.46915 * 299.99906 * 15 14 13 34 34 H 1.08998 * 109.47294 * 59.99399 * 15 14 13 35 35 H 1.08003 * 119.99756 * 0.02562 * 20 19 11 36 36 H 1.07999 * 119.99887 * 180.27392 * 21 20 19 37 37 H 1.07997 * 119.99961 * 179.83876 * 22 21 20 38 38 H 1.07994 * 120.00483 * 180.02562 * 23 22 21 39 39 H 1.08002 * 120.00332 * 359.97438 * 24 19 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 1 0.7879 -5.0073 -0.8405 13 7 0.7289 -5.1181 1.2566 14 6 -0.4297 -6.0051 1.0866 15 6 -1.1852 -6.1170 2.4124 16 7 -2.3409 -7.0010 2.2427 17 8 -2.2184 -8.0560 1.6462 18 8 -3.4243 -6.6812 2.6982 19 6 2.4549 -6.1299 -0.1227 20 6 3.1532 -6.5662 0.9877 21 6 4.0439 -7.6172 0.8750 22 6 4.2431 -8.2261 -0.3499 23 6 3.5487 -7.7865 -1.4614 24 6 2.6548 -6.7381 -1.3478 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5567 0.8902 27 1 0.6248 -2.5571 -0.8897 28 1 2.8720 -3.6043 -0.8895 29 1 2.8719 -3.6043 0.8905 30 1 1.3257 -5.4420 2.0031 31 1 -1.0920 -5.5954 0.3240 32 1 -0.0886 -6.9935 0.7786 33 1 -0.5226 -6.5269 3.1747 34 1 -1.5262 -5.1288 2.7208 35 1 3.0000 -6.0883 1.9441 36 1 4.5862 -7.9609 1.7435 37 1 4.9410 -9.0456 -0.4385 38 1 3.7040 -8.2623 -2.4183 39 1 2.1122 -6.3947 -2.2162 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930569043.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:50 Heat of formation + Delta-G solvation = 5.041486 kcal Electronic energy + Delta-G solvation = -21140.054417 eV Core-core repulsion = 17857.228779 eV Total energy + Delta-G solvation = -3282.825637 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.22914 -39.71233 -37.01720 -36.47849 -34.12001 -32.78688 -31.02309 -30.40291 -30.25561 -26.66140 -24.93038 -23.53396 -22.82762 -22.16634 -21.07674 -20.00671 -18.88792 -18.38772 -17.64576 -17.25538 -16.22285 -15.74283 -15.36303 -14.99526 -14.51392 -14.32304 -14.09993 -13.50087 -13.36915 -13.00191 -12.69842 -12.32429 -12.05357 -11.94713 -11.74634 -11.55936 -11.27240 -11.19286 -11.11324 -11.05493 -10.91398 -10.63351 -10.49732 -9.82660 -9.51391 -9.08923 -8.97609 -8.62486 -8.49155 -8.29588 -5.98470 -4.00179 0.49575 1.30519 1.34842 1.62655 3.30428 3.38304 3.41895 3.72492 3.90048 4.17625 4.32886 4.46306 4.73098 4.76352 4.81486 4.93574 5.06386 5.20393 5.37545 5.40445 5.44047 5.49136 5.58030 5.86764 5.95287 6.02007 6.22931 6.39093 6.39434 6.43490 6.47307 6.66659 6.94323 6.97470 7.13627 7.29488 7.53421 7.72491 7.91642 8.07060 8.45162 9.08076 9.63459 11.12571 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.010550 B = 0.005244 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.371225 B = 5338.223230 C = 7565.799419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.052 0.948 9 C 0.029 3.971 10 C -0.091 4.091 11 C 0.129 3.871 12 H 0.086 0.914 13 N -0.660 5.660 14 C 0.052 3.948 15 C -0.013 4.013 16 N -0.013 5.013 17 O -0.167 6.167 18 O -0.162 6.162 19 C -0.103 4.103 20 C -0.121 4.121 21 C -0.117 4.117 22 C -0.129 4.129 23 C -0.117 4.117 24 C -0.112 4.112 25 H 0.259 0.741 26 H 0.032 0.968 27 H 0.009 0.991 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.340 0.660 31 H 0.090 0.910 32 H 0.057 0.943 33 H 0.134 0.866 34 H 0.145 0.855 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.028 -16.760 2.400 17.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.558 4.558 8 H 0.071 0.929 9 C -0.008 4.008 10 C -0.129 4.129 11 C 0.020 3.980 12 H 0.104 0.896 13 N -0.292 5.292 14 C -0.078 4.078 15 C -0.131 4.131 16 N 0.508 4.492 17 O -0.386 6.386 18 O -0.382 6.382 19 C -0.105 4.105 20 C -0.140 4.140 21 C -0.135 4.135 22 C -0.147 4.147 23 C -0.135 4.135 24 C -0.131 4.131 25 H 0.068 0.932 26 H 0.050 0.950 27 H 0.027 0.973 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.160 0.840 31 H 0.109 0.891 32 H 0.075 0.925 33 H 0.151 0.849 34 H 0.163 0.837 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.122 -15.575 2.407 16.290 hybrid contribution 0.810 -0.008 -0.017 0.810 sum 4.931 -15.582 2.390 16.518 Atomic orbital electron populations 1.69974 1.05979 1.26323 1.51109 1.24992 0.94786 0.99069 0.95485 0.86610 0.80135 0.84125 0.77560 1.19839 1.21088 1.21061 1.21325 0.92950 0.91324 1.50243 0.92945 1.19024 0.93742 0.90298 0.97706 1.21662 0.98605 0.92165 1.00486 1.20875 0.92559 0.93402 0.91165 0.89585 1.60603 1.10091 1.50522 1.08027 1.22069 0.94577 0.97749 0.93385 1.24575 0.87697 0.97374 1.03452 1.44647 1.04146 1.02007 0.98386 1.94550 1.91569 1.12577 1.39911 1.94579 1.15187 1.78865 1.49558 1.20909 0.98649 0.97133 0.93783 1.20934 0.97203 0.97323 0.98492 1.21086 0.98395 0.96421 0.97616 1.21108 1.00150 1.00363 0.93084 1.21147 0.96688 0.97148 0.98551 1.21102 0.98693 0.96044 0.97222 0.93164 0.94978 0.97310 0.92833 0.93026 0.83967 0.89131 0.92463 0.84863 0.83697 0.86201 0.86288 0.86387 0.86209 0.85941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.62 13.29 55.43 0.74 -25.89 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.52 -14.43 9.11 -34.44 -0.31 -14.75 16 8 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 9 C 0.03 0.72 4.86 -27.88 -0.14 0.59 16 10 C -0.09 -1.74 4.81 -26.73 -0.13 -1.87 16 11 C 0.13 1.94 2.22 -68.86 -0.15 1.79 16 12 H 0.09 1.34 7.66 -51.93 -0.40 0.95 16 13 N -0.66 -8.88 5.69 -107.95 -0.61 -9.50 16 14 C 0.05 0.62 5.38 -3.82 -0.02 0.60 16 15 C -0.01 -0.14 6.69 -4.05 -0.03 -0.17 16 16 N -0.01 -0.17 4.23 -10.62 -0.04 -0.22 16 17 O -0.17 -2.36 18.43 -29.46 -0.54 -2.90 16 18 O -0.16 -2.36 19.22 -29.46 -0.57 -2.93 16 19 C -0.10 -1.36 4.71 -104.63 -0.49 -1.85 16 20 C -0.12 -1.44 9.11 -39.58 -0.36 -1.80 16 21 C -0.12 -1.26 10.05 -39.58 -0.40 -1.65 16 22 C -0.13 -1.35 10.05 -39.58 -0.40 -1.74 16 23 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 24 C -0.11 -1.40 9.67 -39.58 -0.38 -1.78 16 25 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 26 H 0.03 0.84 7.75 -51.93 -0.40 0.44 16 27 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.34 3.92 6.36 -39.29 -0.25 3.67 16 31 H 0.09 1.20 8.06 -51.93 -0.42 0.78 16 32 H 0.06 0.67 7.70 -51.93 -0.40 0.27 16 33 H 0.13 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.15 1.51 8.11 -51.93 -0.42 1.09 16 35 H 0.12 1.28 6.53 -52.48 -0.34 0.94 16 36 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 39 H 0.12 1.42 8.04 -52.49 -0.42 1.00 16 LS Contribution 336.86 15.07 5.08 5.08 Total: -1.00 -31.34 336.86 -9.84 -41.18 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -5.55 Total: 1.47 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: -3.30 Total: -22.78 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 0.08 Total: -35.60 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -1.11 Total: -5.83 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.34 -9.84 -41.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930569043.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.220 kcal (2) G-P(sol) polarization free energy of solvation -31.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds