Wall clock time and date at job start Tue Mar 31 2020 00:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 299.99983 * 3 2 1 6 6 H 1.48500 * 109.47000 * 60.00075 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46637 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46983 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.46646 * 55.00200 * 11 10 9 13 13 N 1.46902 * 109.47195 * 295.00537 * 11 10 9 14 14 C 1.46900 * 110.99885 * 155.00130 * 13 11 10 15 15 C 1.53003 * 109.46969 * 179.97438 * 14 13 11 16 16 N 1.46491 * 109.47052 * 179.97438 * 15 14 13 17 17 O 1.21810 * 120.00003 * 45.00302 * 16 15 14 18 18 O 1.21799 * 120.00059 * 224.99392 * 16 15 14 19 19 C 1.50696 * 109.47307 * 174.99742 * 11 10 9 20 20 C 1.38241 * 119.99748 * 79.72867 * 19 11 10 21 21 C 1.38231 * 120.00006 * 179.78971 * 20 19 11 22 22 C 1.38237 * 119.99975 * 0.44300 * 21 20 19 23 23 C 1.38232 * 120.00146 * 359.81024 * 22 21 20 24 24 C 1.38230 * 120.00461 * 260.00562 * 19 11 10 25 25 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 26 26 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 27 27 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 28 28 H 1.09000 * 109.47266 * 299.99671 * 10 9 7 29 29 H 1.08997 * 109.46955 * 60.00501 * 10 9 7 30 30 H 1.00903 * 110.99480 * 278.94812 * 13 11 10 31 31 H 1.09002 * 109.46741 * 299.99560 * 14 13 11 32 32 H 1.08998 * 109.47603 * 59.99327 * 14 13 11 33 33 H 1.09005 * 109.46915 * 299.99906 * 15 14 13 34 34 H 1.08998 * 109.47294 * 59.99399 * 15 14 13 35 35 H 1.08003 * 119.99756 * 0.02562 * 20 19 11 36 36 H 1.07999 * 119.99887 * 180.27392 * 21 20 19 37 37 H 1.07997 * 119.99961 * 179.83876 * 22 21 20 38 38 H 1.07994 * 120.00483 * 180.02562 * 23 22 21 39 39 H 1.08002 * 120.00332 * 359.97438 * 24 19 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 1 0.7879 -5.0073 -0.8405 13 7 0.7289 -5.1181 1.2566 14 6 -0.4297 -6.0051 1.0866 15 6 -1.1852 -6.1170 2.4124 16 7 -2.3409 -7.0010 2.2427 17 8 -2.2184 -8.0560 1.6462 18 8 -3.4243 -6.6812 2.6982 19 6 2.4549 -6.1299 -0.1227 20 6 3.1532 -6.5662 0.9877 21 6 4.0439 -7.6172 0.8750 22 6 4.2431 -8.2261 -0.3499 23 6 3.5487 -7.7865 -1.4614 24 6 2.6548 -6.7381 -1.3478 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5567 0.8902 27 1 0.6248 -2.5571 -0.8897 28 1 2.8720 -3.6043 -0.8895 29 1 2.8719 -3.6043 0.8905 30 1 1.3257 -5.4420 2.0031 31 1 -1.0920 -5.5954 0.3240 32 1 -0.0886 -6.9935 0.7786 33 1 -0.5226 -6.5269 3.1747 34 1 -1.5262 -5.1288 2.7208 35 1 3.0000 -6.0883 1.9441 36 1 4.5862 -7.9609 1.7435 37 1 4.9410 -9.0456 -0.4385 38 1 3.7040 -8.2623 -2.4183 39 1 2.1122 -6.3947 -2.2162 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930569043.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:50 Heat of formation + Delta-G solvation = -12.638309 kcal Electronic energy + Delta-G solvation = -21140.821070 eV Core-core repulsion = 17857.228779 eV Total energy + Delta-G solvation = -3283.592291 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.26323 -40.68180 -38.07149 -37.55936 -35.70391 -34.39402 -32.10142 -31.83297 -31.20482 -28.21044 -26.25761 -24.92623 -23.80339 -23.09331 -22.51821 -21.32679 -19.91971 -19.39653 -18.66185 -18.52997 -17.99096 -16.74785 -16.49240 -16.39214 -15.90068 -15.42237 -15.24565 -14.67474 -14.34750 -14.19446 -14.07898 -13.76550 -13.39768 -13.27226 -12.96127 -12.82715 -12.66067 -12.50852 -12.42620 -12.23426 -12.17123 -12.10032 -11.88829 -11.61380 -11.30202 -11.12246 -10.51208 -9.83713 -9.63423 -9.54964 -8.16022 -6.25765 -0.62056 0.41462 0.49162 0.65194 1.39338 1.40224 1.52572 2.42384 2.81897 2.91653 3.17353 3.32258 3.36425 3.72969 3.87409 3.92135 4.14400 4.18986 4.28359 4.36448 4.43252 4.53942 4.63427 4.67792 4.83315 5.01366 5.08046 5.14169 5.17419 5.32517 5.50538 5.55825 5.57680 5.61505 5.77856 5.94604 6.00109 6.10851 6.29258 6.32439 6.40370 6.93487 7.42766 8.95214 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.010550 B = 0.005244 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.371225 B = 5338.223230 C = 7565.799419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.957 3.043 4 H -0.263 1.263 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.540 4.540 8 H 0.054 0.946 9 C 0.038 3.962 10 C -0.077 4.077 11 C 0.142 3.858 12 H 0.072 0.928 13 N -0.671 5.671 14 C 0.062 3.938 15 C -0.006 4.006 16 N -0.008 5.008 17 O -0.172 6.172 18 O -0.190 6.190 19 C -0.118 4.118 20 C -0.128 4.128 21 C -0.119 4.119 22 C -0.128 4.128 23 C -0.122 4.122 24 C -0.129 4.129 25 H 0.261 0.739 26 H 0.012 0.988 27 H -0.022 1.022 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.353 0.647 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.170 0.830 34 H 0.146 0.854 35 H 0.130 0.870 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.140 0.860 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.093 -17.830 3.097 19.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.783 3.217 4 H -0.187 1.187 5 H -0.207 1.207 6 H -0.204 1.204 7 C -0.578 4.578 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.115 4.115 11 C 0.033 3.967 12 H 0.090 0.910 13 N -0.305 5.305 14 C -0.069 4.069 15 C -0.123 4.123 16 N 0.511 4.489 17 O -0.393 6.393 18 O -0.405 6.405 19 C -0.119 4.119 20 C -0.147 4.147 21 C -0.137 4.137 22 C -0.146 4.146 23 C -0.140 4.140 24 C -0.148 4.148 25 H 0.070 0.930 26 H 0.030 0.970 27 H -0.003 1.003 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.175 0.825 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.187 0.813 34 H 0.164 0.836 35 H 0.148 0.852 36 H 0.162 0.838 37 H 0.163 0.837 38 H 0.158 0.842 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.174 -16.643 3.124 18.024 hybrid contribution 0.216 0.272 -0.264 0.436 sum 6.390 -16.371 2.860 17.805 Atomic orbital electron populations 1.70105 1.07651 1.27370 1.52113 1.25885 0.95650 1.02974 0.95050 0.85516 0.79152 0.79399 0.77682 1.18741 1.20650 1.20440 1.21789 0.93331 0.92837 1.49867 0.92734 1.18851 0.94075 0.91847 0.95130 1.21389 0.97404 0.92478 1.00223 1.20445 0.92510 0.92306 0.91467 0.91010 1.60447 1.10654 1.51589 1.07835 1.21908 0.93729 0.97486 0.93734 1.24648 0.86987 0.97263 1.03376 1.44942 1.04397 1.01937 0.97655 1.94539 1.91617 1.13265 1.39884 1.94584 1.16156 1.79181 1.50574 1.20666 0.99209 0.97197 0.94866 1.21109 0.97304 0.97849 0.98391 1.21424 0.97858 0.95687 0.98763 1.21503 0.99853 1.00587 0.92632 1.21430 0.96069 0.96563 0.99946 1.21250 0.99527 0.96963 0.97019 0.93021 0.97001 1.00346 0.93445 0.92784 0.82496 0.91131 0.91721 0.81264 0.83631 0.85239 0.83792 0.83693 0.84180 0.86134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.62 13.29 21.45 0.28 -56.34 16 2 C 0.00 0.11 5.46 84.66 0.46 0.57 16 3 Si 0.96 44.25 29.54 68.60 2.03 46.28 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.54 -30.46 9.11 25.60 0.23 -30.22 16 8 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 9 C 0.04 1.95 4.86 29.85 0.15 2.09 16 10 C -0.08 -2.99 4.81 30.60 0.15 -2.84 16 11 C 0.14 4.34 2.22 44.17 0.10 4.43 16 12 H 0.07 2.36 7.66 -2.38 -0.02 2.34 16 13 N -0.67 -17.90 5.69 -495.43 -2.82 -20.71 16 14 C 0.06 1.44 5.38 86.30 0.46 1.91 16 15 C -0.01 -0.12 6.69 86.38 0.58 0.46 16 16 N -0.01 -0.20 4.23 -187.50 -0.79 -0.99 16 17 O -0.17 -4.72 18.43 18.87 0.35 -4.37 16 18 O -0.19 -5.52 19.22 18.89 0.36 -5.16 16 19 C -0.12 -3.00 4.71 -19.87 -0.09 -3.09 16 20 C -0.13 -2.78 9.11 22.27 0.20 -2.58 16 21 C -0.12 -2.18 10.05 22.27 0.22 -1.96 16 22 C -0.13 -2.25 10.05 22.27 0.22 -2.02 16 23 C -0.12 -2.41 10.05 22.27 0.22 -2.19 16 24 C -0.13 -3.11 9.67 22.27 0.22 -2.89 16 25 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 26 H 0.01 0.63 7.75 -2.39 -0.02 0.62 16 27 H -0.02 -1.24 8.14 -2.39 -0.02 -1.25 16 28 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.35 7.64 6.36 -89.69 -0.57 7.07 16 31 H 0.07 1.94 8.06 -2.39 -0.02 1.92 16 32 H 0.06 1.44 7.70 -2.39 -0.02 1.43 16 33 H 0.17 2.15 8.14 -2.38 -0.02 2.13 16 34 H 0.15 2.93 8.11 -2.39 -0.02 2.91 16 35 H 0.13 2.46 6.53 -2.91 -0.02 2.44 16 36 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 37 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 38 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 39 H 0.12 2.82 8.04 -2.91 -0.02 2.80 16 Total: -1.00 -68.35 336.86 3.01 -65.34 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.47 Total: 14.28 kcal Atomic # 6 Polarization: -41.46 SS G_CDS: 3.12 Total: -38.33 kcal Atomic # 7 Polarization: -74.72 SS G_CDS: -3.33 Total: -78.04 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.71 Total: -9.53 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -68.35 3.01 -65.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930569043.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.700 kcal (2) G-P(sol) polarization free energy of solvation -68.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds