Wall clock time and date at job start Tue Mar 31 2020 00:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46706 * 120.27574 * 3 2 1 5 5 C 1.37108 * 119.99581 * 263.94411 * 4 3 2 6 6 H 1.08001 * 119.99375 * 200.21679 * 5 4 3 7 7 C 1.38942 * 120.00062 * 20.22135 * 5 4 3 8 8 N 1.31417 * 120.00050 * 21.42260 * 7 5 4 9 9 Si 1.86794 * 120.00123 * 201.42127 * 7 5 4 10 10 H 1.48504 * 109.47374 * 59.99941 * 9 7 5 11 11 H 1.48503 * 109.47600 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.47358 * 299.99938 * 9 7 5 13 13 C 1.34770 * 120.00449 * 83.94844 * 4 3 2 14 14 O 1.21293 * 120.00516 * 179.97438 * 13 4 3 15 15 C 1.50706 * 120.00008 * 359.97438 * 13 4 3 16 16 C 1.52993 * 109.47093 * 180.02562 * 15 13 4 17 17 H 1.09005 * 110.27681 * 304.36228 * 16 15 13 18 18 C 1.54947 * 110.30775 * 182.16748 * 16 15 13 19 19 C 1.55457 * 100.99104 * 204.68988 * 18 16 15 20 20 C 1.54381 * 102.18421 * 34.03762 * 19 18 16 21 21 H 1.08998 * 109.83013 * 98.29604 * 20 19 18 22 22 C 1.52991 * 109.83180 * 219.18373 * 20 19 18 23 23 C 1.53003 * 117.50021 * 184.81777 * 22 20 19 24 24 C 1.52997 * 60.03093 * 252.51936 * 23 22 20 25 25 O 1.43239 * 107.66694 * 338.74383 * 20 19 18 26 26 H 1.08998 * 109.47703 * 0.27422 * 3 2 1 27 27 H 1.08994 * 109.46933 * 240.26777 * 3 2 1 28 28 H 0.97000 * 119.99901 * 180.02562 * 8 7 5 29 29 H 1.08996 * 109.46953 * 59.99989 * 15 13 4 30 30 H 1.08994 * 109.46877 * 300.00315 * 15 13 4 31 31 H 1.08995 * 111.12702 * 322.55849 * 18 16 15 32 32 H 1.08998 * 111.12817 * 86.68059 * 18 16 15 33 33 H 1.08995 * 110.83514 * 275.89439 * 19 18 16 34 34 H 1.09001 * 110.92209 * 152.22557 * 19 18 16 35 35 H 1.08999 * 115.56431 * 330.50052 * 22 20 19 36 36 H 1.09000 * 117.50135 * 145.02047 * 23 22 20 37 37 H 1.08998 * 117.49794 * 0.02562 * 23 22 20 38 38 H 1.09009 * 117.50248 * 107.47778 * 24 23 22 39 39 H 1.09003 * 117.50141 * 252.47396 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0959 0.6973 -1.1929 5 6 3.4427 -0.0176 -2.3103 6 1 4.0918 0.4226 -3.0528 7 6 2.9592 -1.3081 -2.4872 8 7 1.8767 -1.6971 -1.8517 9 14 3.8478 -2.4901 -3.6285 10 1 5.2386 -2.6908 -3.1481 11 1 3.1365 -3.7936 -3.6426 12 1 3.8751 -1.9258 -5.0019 13 6 3.2039 2.0406 -1.1919 14 8 3.6083 2.6173 -2.1794 15 6 2.8222 2.8264 0.0361 16 6 3.0368 4.3183 -0.2260 17 1 4.0648 4.5031 -0.5378 18 6 2.7016 5.1410 1.0436 19 6 2.3510 6.5206 0.4187 20 6 1.6890 6.1152 -0.9157 21 1 0.6042 6.1373 -0.8121 22 6 2.1241 7.0760 -2.0240 23 6 1.4811 6.9032 -3.4015 24 6 2.9395 6.4959 -3.1823 25 8 2.1201 4.7855 -1.2284 26 1 2.9718 -1.0268 -0.0049 27 1 2.9710 0.5105 0.8923 28 1 1.5394 -2.5982 -1.9750 29 1 3.4418 2.5118 0.8759 30 1 1.7732 2.6463 0.2711 31 1 1.8447 4.7202 1.5696 32 1 3.5663 5.2157 1.7030 33 1 3.2529 7.1066 0.2420 34 1 1.6496 7.0667 1.0496 35 1 2.3585 8.0905 -1.7017 36 1 1.2925 7.8040 -3.9855 37 1 0.7477 6.1053 -3.5181 38 1 3.1657 5.4299 -3.1544 39 1 3.7104 7.1286 -3.6224 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931298296.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:17 Heat of formation + Delta-G solvation = -20.394213 kcal Electronic energy + Delta-G solvation = -22129.737690 eV Core-core repulsion = 18845.809078 eV Total energy + Delta-G solvation = -3283.928612 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.79702 -38.52593 -36.24101 -35.61385 -34.23475 -32.12457 -31.81687 -31.00861 -27.48023 -26.84953 -24.53844 -22.37687 -22.09700 -21.26974 -19.86530 -18.90153 -17.83481 -16.89673 -16.29031 -16.18788 -15.55544 -15.07418 -14.66577 -14.52980 -14.15959 -13.73783 -13.13658 -12.99016 -12.90333 -12.38211 -12.29683 -11.97424 -11.70077 -11.52262 -11.50198 -11.29821 -11.17914 -11.08041 -11.00138 -10.83538 -10.70185 -10.52575 -10.37106 -10.25825 -9.99820 -9.81918 -9.17046 -9.11508 -8.45806 -7.93601 -6.42861 -3.93215 3.17117 3.25549 3.27965 3.63480 3.87887 3.96599 4.02557 4.08841 4.18105 4.60074 4.71856 4.77510 4.95502 5.02403 5.17376 5.21749 5.25668 5.30841 5.43511 5.53266 5.55605 5.62352 5.73660 5.80622 5.85605 5.88820 5.97193 6.03779 6.13797 6.20082 6.25008 6.35105 6.46801 6.52071 6.70371 7.49295 7.54133 8.00453 8.36774 8.80643 9.09552 9.28127 9.84961 10.63792 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021086 B = 0.005142 C = 0.004596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.565981 B = 5444.260599 C = 6090.852288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.245 3.755 3 C 0.224 3.776 4 N -0.450 5.450 5 C -0.312 4.312 6 H 0.106 0.894 7 C 0.031 3.969 8 N -0.879 5.879 9 Si 0.925 3.075 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.463 3.537 14 O -0.558 6.558 15 C -0.139 4.139 16 C 0.105 3.895 17 H 0.076 0.924 18 C -0.155 4.155 19 C -0.145 4.145 20 C 0.104 3.896 21 H 0.076 0.924 22 C -0.175 4.175 23 C -0.178 4.178 24 C -0.164 4.164 25 O -0.347 6.347 26 H 0.123 0.877 27 H 0.082 0.918 28 H 0.272 0.728 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.119 0.881 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.581 11.949 7.484 14.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.073 4.073 3 C 0.096 3.904 4 N -0.171 5.171 5 C -0.439 4.439 6 H 0.123 0.877 7 C -0.172 4.172 8 N -0.518 5.518 9 Si 0.752 3.248 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.252 3.748 14 O -0.439 6.439 15 C -0.180 4.180 16 C 0.047 3.953 17 H 0.093 0.907 18 C -0.193 4.193 19 C -0.183 4.183 20 C 0.046 3.954 21 H 0.094 0.906 22 C -0.193 4.193 23 C -0.215 4.215 24 C -0.200 4.200 25 O -0.266 6.266 26 H 0.140 0.860 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.111 0.889 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.121 0.879 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.137 0.863 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.942 11.936 6.788 13.868 hybrid contribution 0.596 -0.677 -0.419 0.994 sum 2.538 11.260 6.370 13.183 Atomic orbital electron populations 1.80880 1.13668 1.10648 1.10163 1.29325 0.95407 0.91291 0.91275 1.18659 0.81641 1.01494 0.88641 1.43633 1.57444 1.04089 1.11965 1.19618 1.27819 0.95699 1.00755 0.87656 1.25261 0.94867 0.98797 0.98320 1.69843 1.18185 1.19787 1.43979 0.86003 0.79360 0.78974 0.80456 1.19798 1.21118 1.19888 1.20021 0.83336 0.82136 0.89339 1.90555 1.49215 1.68498 1.35617 1.21852 1.03193 0.94419 0.98515 1.22602 0.94295 0.92263 0.86117 0.90653 1.23392 1.02425 0.95194 0.98268 1.23127 1.01293 0.97733 0.96124 1.22144 0.97997 0.83279 0.91958 0.90583 1.22742 1.06923 0.99380 0.90294 1.22877 0.97387 1.02758 0.98461 1.22982 0.93288 1.03624 1.00139 1.88648 1.62627 1.27821 1.47532 0.85967 0.89974 0.91739 0.88919 0.89724 0.90392 0.90010 0.90499 0.90456 0.87894 0.89578 0.88735 0.86294 0.89791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.45 18.54 42.15 0.78 -10.67 16 2 C 0.25 5.48 12.82 -20.76 -0.27 5.21 16 3 C 0.22 4.41 4.91 -6.83 -0.03 4.37 16 4 N -0.45 -10.54 2.60 -117.93 -0.31 -10.84 16 5 C -0.31 -8.13 9.27 -14.93 -0.14 -8.27 16 6 H 0.11 2.90 7.43 -52.49 -0.39 2.51 16 7 C 0.03 0.78 4.84 -17.47 -0.08 0.69 16 8 N -0.88 -22.68 9.58 55.50 0.53 -22.15 16 9 Si 0.93 19.96 29.60 -169.99 -5.03 14.92 16 10 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 11 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 12 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 13 C 0.46 10.51 7.47 -10.99 -0.08 10.43 16 14 O -0.56 -14.62 15.20 -6.31 -0.10 -14.71 16 15 C -0.14 -2.37 4.05 -27.88 -0.11 -2.48 16 16 C 0.11 1.67 2.92 -25.71 -0.08 1.59 16 17 H 0.08 1.26 8.00 -51.93 -0.42 0.84 16 18 C -0.16 -1.78 6.57 -24.40 -0.16 -1.94 16 19 C -0.15 -1.57 6.52 -24.70 -0.16 -1.73 16 20 C 0.10 1.46 3.87 -26.01 -0.10 1.36 16 21 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 22 C -0.18 -2.30 5.59 -90.59 -0.51 -2.80 16 23 C -0.18 -2.44 10.24 -26.73 -0.27 -2.71 16 24 C -0.16 -2.44 9.88 -26.70 -0.26 -2.70 16 25 O -0.35 -6.32 8.46 -47.08 -0.40 -6.71 16 26 H 0.12 2.46 6.63 -51.93 -0.34 2.11 16 27 H 0.08 1.20 6.69 -51.93 -0.35 0.85 16 28 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 29 H 0.09 1.23 7.42 -51.93 -0.39 0.84 16 30 H 0.08 1.48 7.49 -51.93 -0.39 1.09 16 31 H 0.08 0.86 8.06 -51.93 -0.42 0.44 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.78 7.84 -51.93 -0.41 0.37 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.10 1.13 8.08 -51.93 -0.42 0.71 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.12 2.24 7.04 -51.92 -0.37 1.88 16 39 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 326.11 15.07 4.91 4.91 Total: -1.00 -31.88 326.11 -7.42 -39.30 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -5.55 Total: 4.95 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -2.26 Total: 1.01 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: 1.01 Total: -43.67 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.49 Total: -21.43 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.03 Total: 14.92 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.88 -7.42 -39.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931298296.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.901 kcal (2) G-P(sol) polarization free energy of solvation -31.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds