Wall clock time and date at job start Tue Mar 31 2020 00:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46706 * 120.27574 * 3 2 1 5 5 C 1.37108 * 119.99581 * 263.94411 * 4 3 2 6 6 H 1.08001 * 119.99375 * 200.21679 * 5 4 3 7 7 C 1.38942 * 120.00062 * 20.22135 * 5 4 3 8 8 N 1.31417 * 120.00050 * 21.42260 * 7 5 4 9 9 Si 1.86794 * 120.00123 * 201.42127 * 7 5 4 10 10 H 1.48504 * 109.47374 * 59.99941 * 9 7 5 11 11 H 1.48503 * 109.47600 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.47358 * 299.99938 * 9 7 5 13 13 C 1.34770 * 120.00449 * 83.94844 * 4 3 2 14 14 O 1.21293 * 120.00516 * 179.97438 * 13 4 3 15 15 C 1.50706 * 120.00008 * 359.97438 * 13 4 3 16 16 C 1.52993 * 109.47093 * 180.02562 * 15 13 4 17 17 H 1.09005 * 110.27681 * 304.36228 * 16 15 13 18 18 C 1.54947 * 110.30775 * 182.16748 * 16 15 13 19 19 C 1.55457 * 100.99104 * 204.68988 * 18 16 15 20 20 C 1.54381 * 102.18421 * 34.03762 * 19 18 16 21 21 H 1.08998 * 109.83013 * 98.29604 * 20 19 18 22 22 C 1.52991 * 109.83180 * 219.18373 * 20 19 18 23 23 C 1.53003 * 117.50021 * 184.81777 * 22 20 19 24 24 C 1.52997 * 60.03093 * 252.51936 * 23 22 20 25 25 O 1.43239 * 107.66694 * 338.74383 * 20 19 18 26 26 H 1.08998 * 109.47703 * 0.27422 * 3 2 1 27 27 H 1.08994 * 109.46933 * 240.26777 * 3 2 1 28 28 H 0.97000 * 119.99901 * 180.02562 * 8 7 5 29 29 H 1.08996 * 109.46953 * 59.99989 * 15 13 4 30 30 H 1.08994 * 109.46877 * 300.00315 * 15 13 4 31 31 H 1.08995 * 111.12702 * 322.55849 * 18 16 15 32 32 H 1.08998 * 111.12817 * 86.68059 * 18 16 15 33 33 H 1.08995 * 110.83514 * 275.89439 * 19 18 16 34 34 H 1.09001 * 110.92209 * 152.22557 * 19 18 16 35 35 H 1.08999 * 115.56431 * 330.50052 * 22 20 19 36 36 H 1.09000 * 117.50135 * 145.02047 * 23 22 20 37 37 H 1.08998 * 117.49794 * 0.02562 * 23 22 20 38 38 H 1.09009 * 117.50248 * 107.47778 * 24 23 22 39 39 H 1.09003 * 117.50141 * 252.47396 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0959 0.6973 -1.1929 5 6 3.4427 -0.0176 -2.3103 6 1 4.0918 0.4226 -3.0528 7 6 2.9592 -1.3081 -2.4872 8 7 1.8767 -1.6971 -1.8517 9 14 3.8478 -2.4901 -3.6285 10 1 5.2386 -2.6908 -3.1481 11 1 3.1365 -3.7936 -3.6426 12 1 3.8751 -1.9258 -5.0019 13 6 3.2039 2.0406 -1.1919 14 8 3.6083 2.6173 -2.1794 15 6 2.8222 2.8264 0.0361 16 6 3.0368 4.3183 -0.2260 17 1 4.0648 4.5031 -0.5378 18 6 2.7016 5.1410 1.0436 19 6 2.3510 6.5206 0.4187 20 6 1.6890 6.1152 -0.9157 21 1 0.6042 6.1373 -0.8121 22 6 2.1241 7.0760 -2.0240 23 6 1.4811 6.9032 -3.4015 24 6 2.9395 6.4959 -3.1823 25 8 2.1201 4.7855 -1.2284 26 1 2.9718 -1.0268 -0.0049 27 1 2.9710 0.5105 0.8923 28 1 1.5394 -2.5982 -1.9750 29 1 3.4418 2.5118 0.8759 30 1 1.7732 2.6463 0.2711 31 1 1.8447 4.7202 1.5696 32 1 3.5663 5.2157 1.7030 33 1 3.2529 7.1066 0.2420 34 1 1.6496 7.0667 1.0496 35 1 2.3585 8.0905 -1.7017 36 1 1.2925 7.8040 -3.9855 37 1 0.7477 6.1053 -3.5181 38 1 3.1657 5.4299 -3.1544 39 1 3.7104 7.1286 -3.6224 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931298296.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:16 Heat of formation + Delta-G solvation = -39.298662 kcal Electronic energy + Delta-G solvation = -22130.557448 eV Core-core repulsion = 18845.809078 eV Total energy + Delta-G solvation = -3284.748370 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.06747 -40.13122 -37.61771 -37.21080 -36.09462 -33.83447 -33.07555 -32.31926 -29.17425 -28.20219 -26.26163 -23.55473 -23.24640 -22.32128 -21.10293 -20.42317 -19.69039 -18.30079 -17.85678 -17.73308 -16.76731 -16.47719 -16.26355 -15.90320 -15.59651 -15.27968 -14.69561 -14.62898 -14.10431 -13.87753 -13.68773 -13.39967 -13.32971 -13.17640 -12.92658 -12.78426 -12.51141 -12.32638 -12.30577 -12.23779 -12.12873 -12.03788 -11.93961 -11.63064 -11.11135 -11.06436 -10.89431 -10.31852 -10.29087 -9.84719 -8.37303 -5.93792 1.41926 1.47132 1.56432 1.87552 2.14217 2.28599 2.37765 2.84529 2.97967 3.03604 3.19356 3.63018 3.63894 3.76553 3.88975 4.05074 4.10619 4.13740 4.24655 4.36767 4.47219 4.49736 4.61290 4.69296 4.78763 4.79774 4.88504 4.91116 4.96469 5.04673 5.10075 5.18968 5.24848 5.39083 5.44266 5.50575 6.09042 6.38854 6.46715 7.04496 7.18506 7.41856 8.02344 8.66702 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021086 B = 0.005142 C = 0.004596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.565981 B = 5444.260599 C = 6090.852288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C 0.258 3.742 3 C 0.223 3.777 4 N -0.463 5.463 5 C -0.339 4.339 6 H 0.077 0.923 7 C 0.003 3.997 8 N -0.896 5.896 9 Si 0.985 3.015 10 H -0.258 1.258 11 H -0.280 1.280 12 H -0.286 1.286 13 C 0.453 3.547 14 O -0.604 6.604 15 C -0.129 4.129 16 C 0.096 3.904 17 H 0.058 0.942 18 C -0.142 4.142 19 C -0.135 4.135 20 C 0.088 3.912 21 H 0.074 0.926 22 C -0.157 4.157 23 C -0.179 4.179 24 C -0.180 4.180 25 O -0.391 6.391 26 H 0.120 0.880 27 H 0.143 0.857 28 H 0.272 0.728 29 H 0.139 0.861 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.136 0.864 36 H 0.113 0.887 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.166 13.202 9.784 16.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.193 5.193 2 C -0.060 4.060 3 C 0.096 3.904 4 N -0.185 5.185 5 C -0.466 4.466 6 H 0.095 0.905 7 C -0.199 4.199 8 N -0.535 5.535 9 Si 0.809 3.191 10 H -0.182 1.182 11 H -0.205 1.205 12 H -0.212 1.212 13 C 0.243 3.757 14 O -0.488 6.488 15 C -0.169 4.169 16 C 0.039 3.961 17 H 0.076 0.924 18 C -0.179 4.179 19 C -0.172 4.172 20 C 0.031 3.969 21 H 0.092 0.908 22 C -0.175 4.175 23 C -0.216 4.216 24 C -0.217 4.217 25 O -0.311 6.311 26 H 0.138 0.862 27 H 0.160 0.840 28 H 0.082 0.918 29 H 0.157 0.843 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.129 0.871 33 H 0.106 0.894 34 H 0.123 0.877 35 H 0.154 0.846 36 H 0.132 0.868 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.522 13.183 9.123 16.229 hybrid contribution 0.396 -1.054 -1.211 1.653 sum 2.918 12.129 7.913 14.773 Atomic orbital electron populations 1.80878 1.14933 1.12038 1.11434 1.29855 0.95940 0.90075 0.90098 1.19053 0.79957 1.02004 0.89342 1.43843 1.57519 1.04664 1.12432 1.19518 1.28497 0.96712 1.01905 0.90476 1.25882 0.95073 0.99419 0.99506 1.69931 1.18722 1.19908 1.44909 0.85122 0.79074 0.76937 0.77945 1.18220 1.20502 1.21208 1.21103 0.81745 0.82120 0.90689 1.90530 1.50931 1.69442 1.37928 1.21898 1.03589 0.94530 0.96882 1.22710 0.93219 0.92103 0.88098 0.92399 1.23362 1.03927 0.94316 0.96327 1.23130 1.02067 0.97744 0.94252 1.22442 0.98278 0.82059 0.94170 0.90833 1.22917 1.04666 1.00442 0.89493 1.22905 0.95717 1.02955 1.00046 1.22798 0.94691 1.01266 1.02966 1.88628 1.63107 1.30089 1.49243 0.86222 0.83967 0.91784 0.84305 0.89936 0.89571 0.87076 0.89401 0.87711 0.84586 0.86850 0.91292 0.91123 0.87897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -24.68 18.54 20.01 0.37 -24.30 16 2 C 0.26 11.32 12.82 89.44 1.15 12.47 16 3 C 0.22 8.48 4.91 84.57 0.42 8.89 16 4 N -0.46 -21.85 2.60 -645.42 -1.68 -23.53 16 5 C -0.34 -18.14 9.27 84.04 0.78 -17.36 16 6 H 0.08 4.48 7.43 -2.91 -0.02 4.46 16 7 C 0.00 0.14 4.84 84.92 0.41 0.55 16 8 N -0.90 -46.30 9.58 21.66 0.21 -46.09 16 9 Si 0.98 41.28 29.60 68.60 2.03 43.31 16 10 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 11 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 12 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 13 C 0.45 20.87 7.47 87.66 0.65 21.52 16 14 O -0.60 -33.31 15.20 8.26 0.13 -33.19 16 15 C -0.13 -4.20 4.05 29.85 0.12 -4.08 16 16 C 0.10 2.96 2.92 31.26 0.09 3.05 16 17 H 0.06 1.94 8.00 -2.38 -0.02 1.92 16 18 C -0.14 -2.74 6.57 32.11 0.21 -2.53 16 19 C -0.13 -2.44 6.52 31.91 0.21 -2.23 16 20 C 0.09 2.36 3.87 31.06 0.12 2.48 16 21 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 22 C -0.16 -3.92 5.59 -10.77 -0.06 -3.98 16 23 C -0.18 -4.91 10.24 30.59 0.31 -4.60 16 24 C -0.18 -5.52 9.88 30.62 0.30 -5.22 16 25 O -0.39 -14.48 8.46 -137.65 -1.17 -15.65 16 26 H 0.12 4.66 6.63 -2.39 -0.02 4.65 16 27 H 0.14 3.63 6.69 -2.39 -0.02 3.61 16 28 H 0.27 13.64 8.31 -92.71 -0.77 12.87 16 29 H 0.14 3.14 7.42 -2.39 -0.02 3.12 16 30 H 0.08 2.76 7.49 -2.39 -0.02 2.74 16 31 H 0.09 1.56 8.06 -2.39 -0.02 1.54 16 32 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.09 1.42 7.84 -2.39 -0.02 1.40 16 34 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.14 2.50 8.08 -2.39 -0.02 2.48 16 36 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.07 2.89 7.04 -2.38 -0.02 2.88 16 39 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 Total: -1.00 -74.33 326.11 5.66 -68.67 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 1.05 Total: 21.83 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: 4.71 Total: 8.96 kcal Atomic # 7 Polarization: -92.83 SS G_CDS: -1.10 Total: -93.93 kcal Atomic # 8 Polarization: -47.80 SS G_CDS: -1.04 Total: -48.84 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -74.33 5.66 -68.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931298296.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.367 kcal (2) G-P(sol) polarization free energy of solvation -74.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds