Wall clock time and date at job start Tue Mar 31 2020 00:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31384 * 1 3 3 Si 1.86800 * 120.00048 * 2 1 4 4 H 1.48506 * 109.46719 * 270.00177 * 3 2 1 5 5 H 1.48501 * 109.46793 * 29.99832 * 3 2 1 6 6 H 1.48489 * 109.47333 * 150.00076 * 3 2 1 7 7 C 1.39026 * 120.00032 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99927 * 179.73031 * 7 2 1 9 9 N 1.36855 * 120.00188 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00043 * 179.73048 * 9 7 2 11 11 O 1.21741 * 120.00078 * 359.97438 * 10 9 7 12 12 C 1.46516 * 119.99603 * 180.02562 * 10 9 7 13 13 C 1.36664 * 125.99088 * 179.71171 * 12 10 9 14 14 C 1.40330 * 106.70235 * 179.84942 * 13 12 10 15 15 C 1.35165 * 107.12810 * 0.41053 * 14 13 12 16 16 C 1.50697 * 125.61151 * 179.74405 * 15 14 13 17 17 N 1.46898 * 109.46897 * 90.02680 * 16 15 14 18 18 C 1.46843 * 111.00194 * 294.20487 * 17 16 15 19 19 C 1.53034 * 109.52727 * 174.16059 * 18 17 16 20 20 C 1.53125 * 109.27605 * 59.18335 * 19 18 17 21 21 C 1.53123 * 109.15980 * 302.34863 * 20 19 18 22 22 C 1.46856 * 110.99606 * 169.99991 * 17 16 15 23 23 O 1.33968 * 108.77581 * 359.74520 * 15 14 13 24 24 H 0.96995 * 120.00126 * 0.02562 * 1 2 3 25 25 H 0.97005 * 119.99768 * 359.72805 * 9 7 2 26 26 H 1.08004 * 126.65107 * 359.97438 * 13 12 10 27 27 H 1.08000 * 126.43671 * 180.13548 * 14 13 12 28 28 H 1.09000 * 109.46867 * 210.02482 * 16 15 14 29 29 H 1.08997 * 109.47380 * 330.02656 * 16 15 14 30 30 H 1.09003 * 109.46423 * 294.18383 * 18 17 16 31 31 H 1.09005 * 109.46259 * 54.14714 * 18 17 16 32 32 H 1.08999 * 109.50680 * 299.24675 * 19 18 17 33 33 H 1.08998 * 109.54072 * 179.14078 * 19 18 17 34 34 H 1.08998 * 109.52442 * 182.43915 * 20 19 18 35 35 H 1.08998 * 109.52443 * 62.24917 * 20 19 18 36 36 H 1.09006 * 109.49992 * 297.70916 * 21 20 19 37 37 H 1.08998 * 109.50127 * 177.59391 * 21 20 19 38 38 H 1.09003 * 109.45949 * 305.85075 * 22 17 16 39 39 H 1.08994 * 109.46019 * 65.82481 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 2.4953 2.0464 -1.4002 5 1 1.4452 2.6526 0.7000 6 1 3.5453 1.4402 0.7000 7 6 2.0090 -1.2040 -0.0005 8 1 3.0890 -1.2040 -0.0049 9 7 1.3248 -2.3892 -0.0005 10 6 1.9987 -3.5564 -0.0066 11 8 3.2161 -3.5564 -0.0125 12 6 1.2660 -4.8252 -0.0071 13 6 1.8220 -6.0736 -0.0184 14 6 0.7583 -6.9889 -0.0108 15 6 -0.3859 -6.2694 -0.0046 16 6 -1.7809 -6.8395 -0.0008 17 7 -2.2291 -7.0277 1.3854 18 6 -1.4255 -8.0525 2.0638 19 6 -1.8218 -8.1186 3.5405 20 6 -3.3113 -8.4566 3.6495 21 6 -4.1228 -7.4006 2.8939 22 6 -3.6598 -7.3553 1.4359 23 8 -0.0758 -4.9661 -0.0024 24 1 -0.4850 0.8400 -0.0004 25 1 0.3547 -2.3892 0.0038 26 1 2.8758 -6.3100 -0.0290 27 1 0.8388 -8.0659 -0.0142 28 1 -2.4557 -6.1519 -0.5107 29 1 -1.7825 -7.7996 -0.5167 30 1 -1.6026 -9.0212 1.5964 31 1 -0.3687 -7.7981 1.9825 32 1 -1.6321 -7.1543 4.0118 33 1 -1.2362 -8.8898 4.0409 34 1 -3.6078 -8.4622 4.6984 35 1 -3.4950 -9.4383 3.2129 36 1 -3.9692 -6.4249 3.3550 37 1 -5.1810 -7.6592 2.9317 38 1 -4.2258 -6.5943 0.8986 39 1 -3.8264 -8.3272 0.9716 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931298415.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:26 Heat of formation + Delta-G solvation = -30.179781 kcal Electronic energy + Delta-G solvation = -21349.059058 eV Core-core repulsion = 18064.706111 eV Total energy + Delta-G solvation = -3284.352946 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.09713 -39.03842 -37.90165 -34.20463 -34.15656 -32.45812 -31.35926 -30.98329 -29.78993 -26.70435 -24.96834 -23.23573 -23.09697 -21.44253 -20.78817 -19.81724 -19.37283 -18.17365 -16.94431 -16.50041 -15.66421 -15.26288 -15.00779 -14.69479 -14.54698 -14.16767 -14.01238 -13.43001 -13.35584 -13.12456 -13.02427 -12.67358 -12.49268 -12.36128 -12.26977 -11.65745 -11.44529 -11.31720 -11.17102 -10.88752 -10.57110 -10.49507 -10.47056 -10.34038 -9.68246 -9.46952 -8.78566 -8.48646 -8.16220 -7.92072 -6.58641 -3.93033 1.74376 2.76818 3.16968 3.20210 3.24768 3.28810 3.88897 4.07111 4.23216 4.63953 4.67182 4.75884 4.81514 5.00709 5.06066 5.18245 5.23479 5.30853 5.34153 5.38997 5.43405 5.45375 5.55803 5.71634 5.76261 5.82190 5.91388 5.99594 6.04165 6.21758 6.24562 6.34296 6.55356 6.85487 6.94532 6.97951 7.39562 7.48436 7.92525 8.45299 8.99499 9.36393 9.88338 10.57296 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022105 B = 0.003900 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.363114 B = 7178.149419 C = 7889.717696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.027 3.973 3 Si 0.937 3.063 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.300 4.300 8 H 0.111 0.889 9 N -0.529 5.529 10 C 0.497 3.503 11 O -0.582 6.582 12 C -0.015 4.015 13 C -0.169 4.169 14 C -0.208 4.208 15 C -0.009 4.009 16 C 0.137 3.863 17 N -0.535 5.535 18 C 0.050 3.950 19 C -0.118 4.118 20 C -0.121 4.121 21 C -0.118 4.118 22 C 0.057 3.943 23 O -0.156 6.156 24 H 0.277 0.723 25 H 0.399 0.601 26 H 0.151 0.849 27 H 0.143 0.857 28 H 0.093 0.907 29 H 0.064 0.936 30 H 0.031 0.969 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.714 -15.877 3.383 18.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.178 4.178 3 Si 0.763 3.237 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.429 4.429 8 H 0.128 0.872 9 N -0.161 5.161 10 C 0.283 3.717 11 O -0.470 6.470 12 C -0.069 4.069 13 C -0.191 4.191 14 C -0.228 4.228 15 C -0.062 4.062 16 C 0.010 3.990 17 N -0.260 5.260 18 C -0.078 4.078 19 C -0.156 4.156 20 C -0.159 4.159 21 C -0.155 4.155 22 C -0.070 4.070 23 O -0.051 6.051 24 H 0.087 0.913 25 H 0.234 0.766 26 H 0.169 0.831 27 H 0.161 0.839 28 H 0.111 0.889 29 H 0.082 0.918 30 H 0.049 0.951 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -9.231 -14.976 3.632 17.963 hybrid contribution -0.206 -0.152 -0.442 0.511 sum -9.437 -15.128 3.190 18.113 Atomic orbital electron populations 1.69628 1.06211 1.28923 1.47272 1.25451 0.95700 1.00256 0.96382 0.85742 0.79323 0.79952 0.78663 1.20043 1.20620 1.19021 1.19873 0.93817 0.81954 1.47292 0.87172 1.41917 1.09859 1.04601 1.59763 1.16178 0.86510 0.81006 0.87962 1.90695 1.11755 1.85372 1.59160 1.22925 0.79229 0.97434 1.07329 1.21660 1.00341 0.90603 1.06478 1.21381 0.91579 0.99957 1.09874 1.22139 0.96077 0.81294 1.06681 1.20369 0.89710 0.99149 0.89789 1.61819 1.03162 1.46368 1.14652 1.22211 0.98976 0.92187 0.94421 1.21585 0.95804 1.02359 0.95804 1.21586 0.95543 0.98463 1.00265 1.21592 0.98767 1.00277 0.94905 1.22088 0.88056 0.99404 0.97486 1.84079 1.24312 1.26530 1.70141 0.91269 0.76620 0.83102 0.83934 0.88858 0.91847 0.95067 0.89762 0.90874 0.91610 0.91895 0.92485 0.90799 0.91579 0.90445 0.94944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.90 13.05 55.50 0.72 -23.18 16 2 C 0.03 0.71 5.50 -17.45 -0.10 0.61 16 3 Si 0.94 20.59 29.55 -169.99 -5.02 15.57 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.30 -8.44 9.68 -15.02 -0.15 -8.58 16 8 H 0.11 3.19 7.15 -52.48 -0.38 2.81 16 9 N -0.53 -14.30 5.27 -12.22 -0.06 -14.37 16 10 C 0.50 13.02 7.73 -12.92 -0.10 12.92 16 11 O -0.58 -16.75 16.44 5.15 0.08 -16.66 16 12 C -0.02 -0.34 7.13 -36.82 -0.26 -0.60 16 13 C -0.17 -3.24 10.62 -39.36 -0.42 -3.66 16 14 C -0.21 -3.26 9.21 -39.89 -0.37 -3.62 16 15 C -0.01 -0.15 6.22 -35.40 -0.22 -0.37 16 16 C 0.14 1.70 5.50 -4.98 -0.03 1.67 16 17 N -0.53 -6.53 4.65 -236.11 -1.10 -7.63 16 18 C 0.05 0.56 5.25 -3.84 -0.02 0.53 16 19 C -0.12 -1.18 6.09 -26.65 -0.16 -1.34 16 20 C -0.12 -1.03 6.00 -26.60 -0.16 -1.19 16 21 C -0.12 -1.05 6.09 -26.65 -0.16 -1.22 16 22 C 0.06 0.56 5.46 -3.83 -0.02 0.54 16 23 O -0.16 -3.18 10.40 4.88 0.05 -3.13 16 24 H 0.28 7.01 8.31 -40.82 -0.34 6.67 16 25 H 0.40 10.59 7.65 -40.82 -0.31 10.27 16 26 H 0.15 2.75 8.06 -52.48 -0.42 2.33 16 27 H 0.14 1.76 8.06 -52.49 -0.42 1.34 16 28 H 0.09 1.11 7.99 -51.93 -0.41 0.69 16 29 H 0.06 0.65 8.12 -51.93 -0.42 0.22 16 30 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 1.07 5.97 -51.93 -0.31 0.76 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.72 8.02 -51.93 -0.42 0.31 16 39 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 325.62 15.07 4.91 4.91 Total: -1.00 -30.96 325.62 -8.19 -39.15 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -5.61 Total: 9.66 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -2.16 Total: -4.31 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: -0.44 Total: -45.18 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: 0.14 Total: -19.79 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.96 -8.19 -39.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931298415.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.972 kcal (2) G-P(sol) polarization free energy of solvation -30.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds