Wall clock time and date at job start Tue Mar 31 2020 00:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31384 * 1 3 3 Si 1.86800 * 120.00048 * 2 1 4 4 H 1.48506 * 109.46719 * 270.00177 * 3 2 1 5 5 H 1.48501 * 109.46793 * 29.99832 * 3 2 1 6 6 H 1.48489 * 109.47333 * 150.00076 * 3 2 1 7 7 C 1.39026 * 120.00032 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99927 * 179.73031 * 7 2 1 9 9 N 1.36855 * 120.00188 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00043 * 179.73048 * 9 7 2 11 11 O 1.21741 * 120.00078 * 359.97438 * 10 9 7 12 12 C 1.46516 * 119.99603 * 180.02562 * 10 9 7 13 13 C 1.36664 * 125.99088 * 179.71171 * 12 10 9 14 14 C 1.40330 * 106.70235 * 179.84942 * 13 12 10 15 15 C 1.35165 * 107.12810 * 0.41053 * 14 13 12 16 16 C 1.50697 * 125.61151 * 179.74405 * 15 14 13 17 17 N 1.46898 * 109.46897 * 90.02680 * 16 15 14 18 18 C 1.46843 * 111.00194 * 294.20487 * 17 16 15 19 19 C 1.53034 * 109.52727 * 174.16059 * 18 17 16 20 20 C 1.53125 * 109.27605 * 59.18335 * 19 18 17 21 21 C 1.53123 * 109.15980 * 302.34863 * 20 19 18 22 22 C 1.46856 * 110.99606 * 169.99991 * 17 16 15 23 23 O 1.33968 * 108.77581 * 359.74520 * 15 14 13 24 24 H 0.96995 * 120.00126 * 0.02562 * 1 2 3 25 25 H 0.97005 * 119.99768 * 359.72805 * 9 7 2 26 26 H 1.08004 * 126.65107 * 359.97438 * 13 12 10 27 27 H 1.08000 * 126.43671 * 180.13548 * 14 13 12 28 28 H 1.09000 * 109.46867 * 210.02482 * 16 15 14 29 29 H 1.08997 * 109.47380 * 330.02656 * 16 15 14 30 30 H 1.09003 * 109.46423 * 294.18383 * 18 17 16 31 31 H 1.09005 * 109.46259 * 54.14714 * 18 17 16 32 32 H 1.08999 * 109.50680 * 299.24675 * 19 18 17 33 33 H 1.08998 * 109.54072 * 179.14078 * 19 18 17 34 34 H 1.08998 * 109.52442 * 182.43915 * 20 19 18 35 35 H 1.08998 * 109.52443 * 62.24917 * 20 19 18 36 36 H 1.09006 * 109.49992 * 297.70916 * 21 20 19 37 37 H 1.08998 * 109.50127 * 177.59391 * 21 20 19 38 38 H 1.09003 * 109.45949 * 305.85075 * 22 17 16 39 39 H 1.08994 * 109.46019 * 65.82481 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 2.4953 2.0464 -1.4002 5 1 1.4452 2.6526 0.7000 6 1 3.5453 1.4402 0.7000 7 6 2.0090 -1.2040 -0.0005 8 1 3.0890 -1.2040 -0.0049 9 7 1.3248 -2.3892 -0.0005 10 6 1.9987 -3.5564 -0.0066 11 8 3.2161 -3.5564 -0.0125 12 6 1.2660 -4.8252 -0.0071 13 6 1.8220 -6.0736 -0.0184 14 6 0.7583 -6.9889 -0.0108 15 6 -0.3859 -6.2694 -0.0046 16 6 -1.7809 -6.8395 -0.0008 17 7 -2.2291 -7.0277 1.3854 18 6 -1.4255 -8.0525 2.0638 19 6 -1.8218 -8.1186 3.5405 20 6 -3.3113 -8.4566 3.6495 21 6 -4.1228 -7.4006 2.8939 22 6 -3.6598 -7.3553 1.4359 23 8 -0.0758 -4.9661 -0.0024 24 1 -0.4850 0.8400 -0.0004 25 1 0.3547 -2.3892 0.0038 26 1 2.8758 -6.3100 -0.0290 27 1 0.8388 -8.0659 -0.0142 28 1 -2.4557 -6.1519 -0.5107 29 1 -1.7825 -7.7996 -0.5167 30 1 -1.6026 -9.0212 1.5964 31 1 -0.3687 -7.7981 1.9825 32 1 -1.6321 -7.1543 4.0118 33 1 -1.2362 -8.8898 4.0409 34 1 -3.6078 -8.4622 4.6984 35 1 -3.4950 -9.4383 3.2129 36 1 -3.9692 -6.4249 3.3550 37 1 -5.1810 -7.6592 2.9317 38 1 -4.2258 -6.5943 0.8986 39 1 -3.8264 -8.3272 0.9716 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931298415.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:26 Heat of formation + Delta-G solvation = -51.359239 kcal Electronic energy + Delta-G solvation = -21349.977468 eV Core-core repulsion = 18064.706111 eV Total energy + Delta-G solvation = -3285.271356 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.60161 -40.06907 -39.75890 -36.24426 -35.11516 -33.92370 -33.41195 -31.80007 -31.07652 -28.15469 -26.65229 -24.29492 -23.95862 -22.89141 -22.26018 -21.04499 -20.57501 -20.23316 -18.73729 -17.62913 -17.10099 -16.75630 -16.44564 -15.94832 -15.75001 -15.30477 -15.21439 -15.17711 -14.95229 -14.20444 -14.08520 -13.99462 -13.84674 -13.59531 -13.54587 -13.12755 -12.99004 -12.55719 -12.47981 -12.12659 -12.10395 -11.67383 -11.60255 -11.29519 -11.27760 -10.89913 -10.88810 -10.23540 -9.54932 -9.22828 -8.61405 -6.08661 0.15967 1.32241 1.40034 1.48226 1.55110 1.80366 2.24497 2.29613 2.97575 3.05997 3.15674 3.67230 3.90172 3.97772 4.02902 4.06612 4.15335 4.27692 4.36968 4.43514 4.54631 4.64609 4.69187 4.71878 4.85155 4.94494 4.96370 4.98599 5.05805 5.09150 5.24999 5.28378 5.33180 5.48657 5.52411 5.75748 6.00660 6.06902 6.18129 6.41116 6.90984 7.29692 7.81827 8.55560 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022105 B = 0.003900 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.363114 B = 7178.149419 C = 7889.717696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.008 4.008 3 Si 1.007 2.993 4 H -0.265 1.265 5 H -0.266 1.266 6 H -0.267 1.267 7 C -0.343 4.343 8 H 0.092 0.908 9 N -0.541 5.541 10 C 0.497 3.503 11 O -0.619 6.619 12 C -0.070 4.070 13 C -0.147 4.147 14 C -0.200 4.200 15 C 0.008 3.992 16 C 0.137 3.863 17 N -0.559 5.559 18 C 0.049 3.951 19 C -0.119 4.119 20 C -0.117 4.117 21 C -0.118 4.118 22 C 0.057 3.943 23 O -0.175 6.175 24 H 0.285 0.715 25 H 0.398 0.602 26 H 0.157 0.843 27 H 0.187 0.813 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.189 -17.969 3.328 21.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.210 4.210 3 Si 0.828 3.172 4 H -0.190 1.190 5 H -0.190 1.190 6 H -0.191 1.191 7 C -0.472 4.472 8 H 0.110 0.890 9 N -0.173 5.173 10 C 0.286 3.714 11 O -0.509 6.509 12 C -0.122 4.122 13 C -0.169 4.169 14 C -0.220 4.220 15 C -0.044 4.044 16 C 0.010 3.990 17 N -0.285 5.285 18 C -0.078 4.078 19 C -0.157 4.157 20 C -0.154 4.154 21 C -0.156 4.156 22 C -0.070 4.070 23 O -0.071 6.071 24 H 0.095 0.905 25 H 0.232 0.768 26 H 0.175 0.825 27 H 0.204 0.796 28 H 0.115 0.885 29 H 0.117 0.883 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.733 -17.079 3.579 20.487 hybrid contribution 0.141 0.263 -0.399 0.498 sum -10.592 -16.816 3.180 20.127 Atomic orbital electron populations 1.69693 1.07380 1.30263 1.47267 1.26360 0.96614 1.03124 0.94898 0.84742 0.77913 0.75435 0.79109 1.19009 1.19026 1.19147 1.19914 0.93355 0.83364 1.50576 0.89049 1.41932 1.09628 1.04882 1.60850 1.16696 0.86486 0.82116 0.86117 1.90633 1.13375 1.86543 1.60360 1.22198 0.80414 0.96475 1.13125 1.21999 1.01560 0.90205 1.03119 1.21749 0.89687 1.01536 1.08982 1.23182 0.98457 0.79786 1.03021 1.20592 0.87245 1.00521 0.90682 1.61751 1.04707 1.47649 1.14401 1.22222 0.97772 0.92801 0.95036 1.21595 0.97338 1.01514 0.95227 1.21569 0.94147 0.98883 1.00832 1.21609 1.00082 0.99438 0.94444 1.22154 0.86370 1.00399 0.98051 1.84047 1.23344 1.29020 1.70712 0.90517 0.76798 0.82512 0.79614 0.88488 0.88312 0.92913 0.91566 0.93378 0.90283 0.91228 0.90971 0.92915 0.89609 0.90412 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.18 13.05 21.68 0.28 -49.90 16 2 C -0.01 -0.43 5.50 84.95 0.47 0.03 16 3 Si 1.01 42.71 29.55 68.60 2.03 44.74 16 4 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 5 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 6 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 7 C -0.34 -20.29 9.68 84.10 0.81 -19.47 16 8 H 0.09 5.61 7.15 -2.91 -0.02 5.59 16 9 N -0.54 -30.91 5.27 -310.76 -1.64 -32.54 16 10 C 0.50 27.45 7.73 86.40 0.67 28.12 16 11 O -0.62 -37.44 16.44 -4.48 -0.07 -37.51 16 12 C -0.07 -3.17 7.13 24.06 0.17 -3.00 16 13 C -0.15 -5.54 10.62 22.41 0.24 -5.30 16 14 C -0.20 -5.73 9.21 22.07 0.20 -5.52 16 15 C 0.01 0.25 6.22 24.98 0.16 0.41 16 16 C 0.14 2.97 5.50 85.56 0.47 3.45 16 17 N -0.56 -12.27 4.65 -900.93 -4.19 -16.46 16 18 C 0.05 0.96 5.25 86.33 0.45 1.41 16 19 C -0.12 -2.15 6.09 30.65 0.19 -1.97 16 20 C -0.12 -1.67 6.00 30.68 0.18 -1.49 16 21 C -0.12 -1.84 6.09 30.65 0.19 -1.66 16 22 C 0.06 0.94 5.46 86.32 0.47 1.41 16 23 O -0.18 -7.23 10.40 -5.44 -0.06 -7.29 16 24 H 0.29 14.47 8.31 -92.71 -0.77 13.70 16 25 H 0.40 22.33 7.65 -92.70 -0.71 21.62 16 26 H 0.16 5.62 8.06 -2.91 -0.02 5.60 16 27 H 0.19 3.67 8.06 -2.91 -0.02 3.65 16 28 H 0.10 2.07 7.99 -2.39 -0.02 2.05 16 29 H 0.10 1.51 8.12 -2.39 -0.02 1.49 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 1.51 5.97 -2.38 -0.01 1.50 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.08 16 33 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.08 1.27 8.02 -2.39 -0.02 1.25 16 39 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -70.55 325.62 1.37 -69.18 By element: Atomic # 1 Polarization: 33.01 SS G_CDS: 0.35 Total: 33.36 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 4.67 Total: -3.57 kcal Atomic # 7 Polarization: -93.36 SS G_CDS: -5.54 Total: -98.90 kcal Atomic # 8 Polarization: -44.67 SS G_CDS: -0.13 Total: -44.80 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -70.55 1.37 -69.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931298415.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.818 kcal (2) G-P(sol) polarization free energy of solvation -70.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds