Wall clock time and date at job start Tue Mar 31 2020 00:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 120.00253 * 2 1 4 4 H 1.48493 * 109.47213 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46861 * 300.00712 * 3 2 1 6 6 H 1.48505 * 109.46584 * 60.00387 * 3 2 1 7 7 C 1.37885 * 120.00397 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00354 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99625 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47200 * 180.02562 * 9 7 2 11 11 C 1.34773 * 119.99938 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00071 * 359.97438 * 11 10 9 13 13 C 1.50704 * 119.99665 * 179.97438 * 11 10 9 14 14 N 1.46899 * 109.46983 * 181.42161 * 13 11 10 15 15 C 1.46900 * 111.00096 * 162.31123 * 14 13 11 16 16 C 1.50700 * 109.47335 * 190.00472 * 15 14 13 17 17 C 1.41383 * 126.57648 * 270.01622 * 16 15 14 18 18 C 1.34512 * 106.84091 * 179.97438 * 17 16 15 19 19 O 1.34312 * 108.42089 * 359.97438 * 18 17 16 20 20 C 1.34305 * 109.47110 * 0.02562 * 19 18 17 21 21 C 1.46896 * 111.00636 * 286.26560 * 14 13 11 22 22 C 1.53010 * 117.49552 * 3.77029 * 21 14 13 23 23 C 1.53002 * 117.49826 * 295.14893 * 21 14 13 24 24 H 0.96996 * 119.99621 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46952 * 60.00469 * 9 7 2 26 26 H 1.08999 * 109.47459 * 300.00615 * 9 7 2 27 27 H 0.97000 * 119.99702 * 359.97438 * 10 9 7 28 28 H 1.09006 * 109.46946 * 61.42934 * 13 11 10 29 29 H 1.08998 * 109.47247 * 301.42433 * 13 11 10 30 30 H 1.08996 * 109.47132 * 70.00288 * 15 14 13 31 31 H 1.09004 * 109.46796 * 310.00047 * 15 14 13 32 32 H 1.07999 * 126.58431 * 359.94662 * 17 16 15 33 33 H 1.08004 * 125.79247 * 180.02562 * 18 17 16 34 34 H 1.08003 * 125.77960 * 180.02562 * 20 19 18 35 35 H 1.08999 * 115.55636 * 149.46958 * 21 14 13 36 36 H 1.08995 * 117.49488 * 359.97438 * 22 21 14 37 37 H 1.08990 * 117.49859 * 145.02130 * 22 21 14 38 38 H 1.08995 * 117.49766 * 214.97181 * 23 21 14 39 39 H 1.09000 * 117.49825 * 359.97438 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7538 -4.8833 -0.0011 12 8 0.5615 -5.1049 -0.0011 13 6 2.7332 -6.0288 -0.0016 14 7 1.9991 -7.3007 -0.0365 15 6 2.8752 -8.4030 -0.4551 16 6 2.0449 -9.6332 -0.7165 17 6 1.7039 -10.6344 0.2217 18 6 0.9566 -11.5422 -0.4315 19 8 0.8272 -11.1459 -1.7083 20 6 1.4853 -9.9888 -1.8868 21 6 1.3786 -7.5863 1.2640 22 6 1.5118 -6.5255 2.3585 23 6 2.3102 -7.8273 2.4535 24 1 -0.4849 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 3.1568 -3.4354 -0.0009 28 1 3.3430 -5.9859 0.9009 29 1 3.3765 -5.9564 -0.8786 30 1 3.5973 -8.6129 0.3339 31 1 3.4037 -8.1211 -1.3659 32 1 1.9891 -10.6648 1.2629 33 1 0.5319 -12.4376 -0.0020 34 1 1.5531 -9.4372 -2.8128 35 1 0.4512 -8.1580 1.2271 36 1 2.0602 -5.6159 2.1136 37 1 0.6721 -6.3991 3.0418 38 1 1.9956 -8.5572 3.1993 39 1 3.3835 -7.7743 2.2710 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934007249.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:02 Heat of formation + Delta-G solvation = 22.773571 kcal Electronic energy + Delta-G solvation = -21346.013283 eV Core-core repulsion = 18063.956566 eV Total energy + Delta-G solvation = -3282.056716 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.58698 -39.78480 -37.65543 -34.43918 -34.07094 -32.61443 -32.24506 -29.95190 -28.37387 -26.61100 -24.94563 -22.60975 -22.30127 -21.58234 -21.01474 -19.81795 -19.24785 -17.52308 -16.99668 -16.90176 -16.09378 -15.63084 -15.43628 -14.83709 -14.68778 -14.27395 -13.99354 -13.93785 -13.57664 -12.89366 -12.81359 -12.56848 -12.30872 -12.08373 -11.89915 -11.53102 -11.34774 -11.18623 -10.93054 -10.87813 -10.57899 -10.30156 -10.04879 -9.79587 -9.35611 -8.98795 -8.71243 -8.61752 -8.12210 -7.80570 -6.15191 -4.21829 1.72803 2.47778 3.09960 3.23881 3.30925 3.33884 3.45666 3.78920 3.93937 4.27851 4.44633 4.71041 4.73359 4.93269 4.95465 5.05262 5.07060 5.20872 5.29933 5.38659 5.41491 5.49519 5.64034 5.65249 5.65764 5.97017 6.03622 6.09600 6.15536 6.28645 6.41669 6.95807 7.04669 7.11642 7.36374 7.50830 7.55950 7.70968 7.99714 8.68750 8.83032 9.20160 9.45372 10.95029 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035855 B = 0.003282 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.736404 B = 8529.289493 C = 8766.362378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.253 3.747 10 N -0.719 5.719 11 C 0.499 3.501 12 O -0.529 6.529 13 C 0.026 3.974 14 N -0.483 5.483 15 C 0.125 3.875 16 C -0.169 4.169 17 C -0.200 4.200 18 C -0.051 4.051 19 O -0.180 6.180 20 C -0.020 4.020 21 C 0.051 3.949 22 C -0.175 4.175 23 C -0.224 4.224 24 H 0.265 0.735 25 H 0.026 0.974 26 H 0.025 0.975 27 H 0.388 0.612 28 H 0.063 0.937 29 H 0.097 0.903 30 H 0.046 0.954 31 H 0.082 0.918 32 H 0.144 0.856 33 H 0.198 0.802 34 H 0.202 0.798 35 H 0.120 0.880 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.608 -20.640 0.965 22.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.081 0.919 9 C 0.132 3.868 10 N -0.369 5.369 11 C 0.283 3.717 12 O -0.405 6.405 13 C -0.105 4.105 14 N -0.206 5.206 15 C -0.002 4.002 16 C -0.171 4.171 17 C -0.219 4.219 18 C -0.119 4.119 19 O -0.076 6.076 20 C -0.089 4.089 21 C -0.057 4.057 22 C -0.212 4.212 23 C -0.263 4.263 24 H 0.075 0.925 25 H 0.044 0.956 26 H 0.043 0.957 27 H 0.220 0.780 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.162 0.838 33 H 0.215 0.785 34 H 0.218 0.782 35 H 0.138 0.862 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.112 0.888 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.025 -20.754 0.372 21.614 hybrid contribution 1.585 1.160 0.873 2.149 sum 7.610 -19.594 1.246 21.057 Atomic orbital electron populations 1.69986 1.06094 1.27134 1.49045 1.24957 0.94900 0.99429 0.94776 0.86379 0.79829 0.83063 0.77739 1.19657 1.20810 1.20828 1.21273 0.93258 0.90510 1.52972 0.91924 1.19051 0.88255 0.81883 0.97616 1.46450 1.10916 1.06082 1.73478 1.20158 0.89642 0.83851 0.78070 1.90673 1.16385 1.84477 1.48977 1.22169 0.95706 0.90108 1.02550 1.61665 1.31756 1.00249 1.26907 1.20406 0.92098 0.87385 1.00291 1.20171 1.05112 0.98158 0.93627 1.21709 1.03581 0.95835 1.00785 1.23931 1.04127 1.01796 0.82006 1.84069 1.59221 1.34825 1.29461 1.23896 0.97379 0.86923 1.00702 1.22537 0.98601 1.02148 0.82458 1.23284 1.02770 0.93347 1.01822 1.23446 0.98143 1.01110 1.03596 0.92533 0.95645 0.95703 0.78021 0.91936 0.88522 0.93587 0.89941 0.83828 0.78521 0.78166 0.86186 0.88355 0.88427 0.88835 0.89402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.54 -14.70 9.28 -34.44 -0.32 -15.02 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.25 6.71 5.43 -5.19 -0.03 6.68 16 10 N -0.72 -15.01 5.55 -61.47 -0.34 -15.35 16 11 C 0.50 9.88 5.89 -10.99 -0.06 9.82 16 12 O -0.53 -12.76 15.21 5.56 0.08 -12.67 16 13 C 0.03 0.37 5.00 -4.97 -0.02 0.35 16 14 N -0.48 -6.87 4.33 -229.51 -0.99 -7.87 16 15 C 0.13 1.38 5.37 -4.98 -0.03 1.36 16 16 C -0.17 -1.90 5.16 -104.75 -0.54 -2.44 16 17 C -0.20 -2.04 10.45 -39.70 -0.41 -2.45 16 18 C -0.05 -0.48 12.09 29.42 0.36 -0.12 16 19 O -0.18 -2.01 10.65 5.68 0.06 -1.95 16 20 C -0.02 -0.22 12.01 29.41 0.35 0.13 16 21 C 0.05 0.73 4.62 -67.71 -0.31 0.42 16 22 C -0.17 -2.58 8.47 -26.72 -0.23 -2.80 16 23 C -0.22 -2.58 9.26 -26.73 -0.25 -2.83 16 24 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 25 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.39 6.89 8.32 -40.82 -0.34 6.55 16 28 H 0.06 0.80 5.99 -51.93 -0.31 0.49 16 29 H 0.10 1.16 7.77 -51.93 -0.40 0.75 16 30 H 0.05 0.47 6.87 -51.93 -0.36 0.11 16 31 H 0.08 0.79 7.85 -51.93 -0.41 0.39 16 32 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.20 1.12 8.06 -52.48 -0.42 0.70 16 34 H 0.20 1.72 8.06 -52.48 -0.42 1.30 16 35 H 0.12 1.81 8.14 -51.93 -0.42 1.38 16 36 H 0.10 1.60 4.91 -51.93 -0.26 1.34 16 37 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.09 0.94 7.15 -51.93 -0.37 0.57 16 LS Contribution 328.02 15.07 4.94 4.94 Total: -1.00 -33.34 328.02 -7.49 -40.82 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -5.36 Total: 6.96 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -1.59 Total: -5.27 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: -0.60 Total: -48.68 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: 0.15 Total: -14.63 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.34 -7.49 -40.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934007249.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.598 kcal (2) G-P(sol) polarization free energy of solvation -33.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds