Wall clock time and date at job start Tue Mar 31 2020 00:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 120.00253 * 2 1 4 4 H 1.48493 * 109.47213 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46861 * 300.00712 * 3 2 1 6 6 H 1.48505 * 109.46584 * 60.00387 * 3 2 1 7 7 C 1.37885 * 120.00397 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00354 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99625 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47200 * 180.02562 * 9 7 2 11 11 C 1.34773 * 119.99938 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00071 * 359.97438 * 11 10 9 13 13 C 1.50704 * 119.99665 * 179.97438 * 11 10 9 14 14 N 1.46899 * 109.46983 * 181.42161 * 13 11 10 15 15 C 1.46900 * 111.00096 * 162.31123 * 14 13 11 16 16 C 1.50700 * 109.47335 * 190.00472 * 15 14 13 17 17 C 1.41383 * 126.57648 * 270.01622 * 16 15 14 18 18 C 1.34512 * 106.84091 * 179.97438 * 17 16 15 19 19 O 1.34312 * 108.42089 * 359.97438 * 18 17 16 20 20 C 1.34305 * 109.47110 * 0.02562 * 19 18 17 21 21 C 1.46896 * 111.00636 * 286.26560 * 14 13 11 22 22 C 1.53010 * 117.49552 * 3.77029 * 21 14 13 23 23 C 1.53002 * 117.49826 * 295.14893 * 21 14 13 24 24 H 0.96996 * 119.99621 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46952 * 60.00469 * 9 7 2 26 26 H 1.08999 * 109.47459 * 300.00615 * 9 7 2 27 27 H 0.97000 * 119.99702 * 359.97438 * 10 9 7 28 28 H 1.09006 * 109.46946 * 61.42934 * 13 11 10 29 29 H 1.08998 * 109.47247 * 301.42433 * 13 11 10 30 30 H 1.08996 * 109.47132 * 70.00288 * 15 14 13 31 31 H 1.09004 * 109.46796 * 310.00047 * 15 14 13 32 32 H 1.07999 * 126.58431 * 359.94662 * 17 16 15 33 33 H 1.08004 * 125.79247 * 180.02562 * 18 17 16 34 34 H 1.08003 * 125.77960 * 180.02562 * 20 19 18 35 35 H 1.08999 * 115.55636 * 149.46958 * 21 14 13 36 36 H 1.08995 * 117.49488 * 359.97438 * 22 21 14 37 37 H 1.08990 * 117.49859 * 145.02130 * 22 21 14 38 38 H 1.08995 * 117.49766 * 214.97181 * 23 21 14 39 39 H 1.09000 * 117.49825 * 359.97438 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7538 -4.8833 -0.0011 12 8 0.5615 -5.1049 -0.0011 13 6 2.7332 -6.0288 -0.0016 14 7 1.9991 -7.3007 -0.0365 15 6 2.8752 -8.4030 -0.4551 16 6 2.0449 -9.6332 -0.7165 17 6 1.7039 -10.6344 0.2217 18 6 0.9566 -11.5422 -0.4315 19 8 0.8272 -11.1459 -1.7083 20 6 1.4853 -9.9888 -1.8868 21 6 1.3786 -7.5863 1.2640 22 6 1.5118 -6.5255 2.3585 23 6 2.3102 -7.8273 2.4535 24 1 -0.4849 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 3.1568 -3.4354 -0.0009 28 1 3.3430 -5.9859 0.9009 29 1 3.3765 -5.9564 -0.8786 30 1 3.5973 -8.6129 0.3339 31 1 3.4037 -8.1211 -1.3659 32 1 1.9891 -10.6648 1.2629 33 1 0.5319 -12.4376 -0.0020 34 1 1.5531 -9.4372 -2.8128 35 1 0.4512 -8.1580 1.2271 36 1 2.0602 -5.6159 2.1136 37 1 0.6721 -6.3991 3.0418 38 1 1.9956 -8.5572 3.1993 39 1 3.3835 -7.7743 2.2710 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934007249.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:01 Heat of formation + Delta-G solvation = -1.680219 kcal Electronic energy + Delta-G solvation = -21347.073679 eV Core-core repulsion = 18063.956566 eV Total energy + Delta-G solvation = -3283.117112 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.35339 -41.10886 -39.09697 -36.03027 -35.35425 -34.30931 -33.52731 -30.86532 -29.86279 -28.16470 -26.01325 -24.53102 -23.29993 -22.40957 -22.14172 -21.15752 -20.43974 -18.86690 -18.27413 -18.02721 -17.36287 -17.17614 -16.76715 -16.30335 -15.90014 -15.51875 -15.38985 -15.16423 -14.63690 -14.33131 -14.06052 -13.92155 -13.57510 -13.46599 -13.21736 -12.89390 -12.83188 -12.67881 -12.41091 -12.20920 -12.17499 -11.60464 -11.44115 -11.11401 -10.79972 -10.66613 -10.56963 -9.74982 -9.38998 -9.15315 -8.28270 -6.44689 0.96360 1.43193 1.44399 1.57796 1.67839 1.89008 2.32040 2.40225 2.54926 2.89129 3.06606 3.13416 3.74449 3.93032 3.96319 4.04480 4.05569 4.09977 4.23844 4.34331 4.38945 4.63150 4.65368 4.74229 4.88211 4.93665 5.11900 5.14002 5.17098 5.22470 5.27247 5.38067 5.52098 5.67213 5.73185 5.87492 5.98636 6.09667 6.31431 6.67555 7.01915 7.25361 7.61606 8.84148 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035855 B = 0.003282 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.736404 B = 8529.289493 C = 8766.362378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.984 3.016 4 H -0.252 1.252 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.553 4.553 8 H 0.084 0.916 9 C 0.271 3.729 10 N -0.714 5.714 11 C 0.497 3.503 12 O -0.579 6.579 13 C 0.041 3.959 14 N -0.505 5.505 15 C 0.128 3.872 16 C -0.184 4.184 17 C -0.213 4.213 18 C -0.052 4.052 19 O -0.195 6.195 20 C -0.036 4.036 21 C 0.042 3.958 22 C -0.203 4.203 23 C -0.181 4.181 24 H 0.268 0.732 25 H -0.017 1.017 26 H -0.016 1.016 27 H 0.406 0.594 28 H 0.087 0.913 29 H 0.129 0.871 30 H 0.062 0.938 31 H 0.098 0.902 32 H 0.156 0.844 33 H 0.230 0.770 34 H 0.215 0.785 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.112 0.888 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.582 -21.468 1.208 23.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.808 3.192 4 H -0.175 1.175 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.591 4.591 8 H 0.102 0.898 9 C 0.148 3.852 10 N -0.365 5.365 11 C 0.284 3.716 12 O -0.458 6.458 13 C -0.089 4.089 14 N -0.228 5.228 15 C 0.002 3.998 16 C -0.186 4.186 17 C -0.233 4.233 18 C -0.118 4.118 19 O -0.091 6.091 20 C -0.105 4.105 21 C -0.067 4.067 22 C -0.241 4.241 23 C -0.220 4.220 24 H 0.077 0.923 25 H 0.001 0.999 26 H 0.001 0.999 27 H 0.242 0.758 28 H 0.105 0.895 29 H 0.147 0.853 30 H 0.080 0.920 31 H 0.117 0.883 32 H 0.174 0.826 33 H 0.246 0.754 34 H 0.231 0.769 35 H 0.121 0.879 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.131 0.869 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 9.056 -21.621 0.616 23.449 hybrid contribution 0.568 1.323 0.805 1.650 sum 9.624 -20.297 1.421 22.508 Atomic orbital electron populations 1.70152 1.08318 1.28423 1.50183 1.26082 0.95760 1.03948 0.93951 0.85117 0.79159 0.77348 0.77622 1.17497 1.20518 1.20536 1.21662 0.94302 0.90588 1.52539 0.89776 1.18447 0.88638 0.84391 0.93718 1.46178 1.10979 1.05513 1.73854 1.21219 0.90067 0.84516 0.75817 1.90649 1.19119 1.85179 1.50833 1.22046 0.94032 0.87705 1.05167 1.61540 1.33085 1.01034 1.27160 1.20478 0.91748 0.86104 1.01421 1.20374 1.05543 0.98576 0.94065 1.21946 1.04048 0.95888 1.01387 1.24624 1.03377 1.02535 0.81284 1.84070 1.59453 1.35062 1.30484 1.24276 0.97519 0.87149 1.01517 1.22416 0.99245 1.01768 0.83239 1.23227 1.03676 0.94137 1.03024 1.23481 0.98428 0.98443 1.01680 0.92327 0.99879 0.99850 0.75833 0.89511 0.85275 0.91984 0.88329 0.82597 0.75367 0.76866 0.87854 0.90078 0.89707 0.86922 0.87561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.86 13.29 21.45 0.28 -56.57 16 2 C 0.00 0.11 5.46 84.66 0.46 0.57 16 3 Si 0.98 42.48 29.54 68.60 2.03 44.51 16 4 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.55 -30.21 9.28 25.60 0.24 -29.97 16 8 H 0.08 4.13 7.60 -2.91 -0.02 4.11 16 9 C 0.27 15.05 5.43 85.63 0.46 15.52 16 10 N -0.71 -30.09 5.55 -466.79 -2.59 -32.68 16 11 C 0.50 19.87 5.89 87.66 0.52 20.38 16 12 O -0.58 -29.17 15.21 -3.02 -0.05 -29.21 16 13 C 0.04 1.09 5.00 85.56 0.43 1.52 16 14 N -0.51 -13.58 4.33 -880.04 -3.81 -17.39 16 15 C 0.13 2.49 5.37 85.56 0.46 2.95 16 16 C -0.18 -3.82 5.16 -19.94 -0.10 -3.92 16 17 C -0.21 -3.94 10.45 22.19 0.23 -3.71 16 18 C -0.05 -0.88 12.09 66.97 0.81 -0.07 16 19 O -0.19 -4.15 10.65 -2.59 -0.03 -4.18 16 20 C -0.04 -0.76 12.01 66.97 0.80 0.05 16 21 C 0.04 1.16 4.62 44.92 0.21 1.37 16 22 C -0.20 -5.97 8.47 30.60 0.26 -5.71 16 23 C -0.18 -3.71 9.26 30.60 0.28 -3.42 16 24 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 25 H -0.02 -1.06 8.14 -2.39 -0.02 -1.07 16 26 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 27 H 0.41 13.94 8.32 -92.71 -0.77 13.17 16 28 H 0.09 1.94 5.99 -2.38 -0.01 1.92 16 29 H 0.13 2.62 7.77 -2.39 -0.02 2.60 16 30 H 0.06 1.01 6.87 -2.39 -0.02 0.99 16 31 H 0.10 1.57 7.85 -2.38 -0.02 1.55 16 32 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 33 H 0.23 2.02 8.06 -2.91 -0.02 2.00 16 34 H 0.21 3.49 8.06 -2.91 -0.02 3.47 16 35 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 36 H 0.08 2.64 4.91 -2.39 -0.01 2.63 16 37 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 38 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.11 1.82 7.15 -2.39 -0.02 1.81 16 Total: -1.00 -76.22 328.02 1.19 -75.03 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: 0.29 Total: 24.95 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: 5.06 Total: -4.45 kcal Atomic # 7 Polarization: -100.53 SS G_CDS: -6.12 Total: -106.65 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -0.07 Total: -33.39 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -76.22 1.19 -75.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934007249.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.347 kcal (2) G-P(sol) polarization free energy of solvation -76.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds