Wall clock time and date at job start Tue Mar 31 2020 00:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 119.99854 * 2 1 4 4 H 1.48504 * 109.47049 * 274.81081 * 3 2 1 5 5 H 1.48496 * 109.47168 * 34.81324 * 3 2 1 6 6 H 1.48498 * 109.47067 * 154.81523 * 3 2 1 7 7 C 1.38809 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99828 * 170.81032 * 7 2 1 9 9 N 1.36934 * 120.00290 * 350.81856 * 7 2 1 10 10 C 1.48145 * 127.83824 * 164.38686 * 9 7 2 11 11 C 1.54388 * 104.61831 * 140.41221 * 10 9 7 12 12 H 1.08995 * 117.61723 * 242.76441 * 11 10 9 13 13 C 1.54147 * 106.22753 * 23.25229 * 11 10 9 14 14 H 1.09002 * 121.78944 * 221.55300 * 13 11 10 15 15 C 1.48148 * 127.83738 * 344.38510 * 9 7 2 16 16 C 1.53003 * 59.75331 * 113.48664 * 13 11 10 17 17 H 1.08998 * 117.44385 * 252.36887 * 16 13 11 18 18 N 1.46498 * 117.44017 * 107.62935 * 16 13 11 19 19 C 1.34773 * 120.00459 * 135.99982 * 18 16 13 20 20 O 1.21743 * 119.99698 * 359.97438 * 19 18 16 21 21 C 1.41798 * 120.00355 * 179.97438 * 19 18 16 22 22 C 1.33454 * 118.78667 * 180.02562 * 21 19 18 23 23 O 1.34350 * 123.08134 * 180.13828 * 22 21 19 24 24 C 1.45356 * 117.48055 * 343.66797 * 23 22 21 25 25 C 1.53482 * 108.26231 * 47.47340 * 24 23 22 26 26 C 1.50411 * 118.78557 * 359.72619 * 21 19 18 27 27 H 0.96996 * 119.99755 * 0.02562 * 1 2 3 28 28 H 1.09000 * 110.40958 * 21.62529 * 10 9 7 29 29 H 1.09002 * 110.50414 * 259.24626 * 10 9 7 30 30 H 1.09001 * 110.40818 * 338.37139 * 15 9 7 31 31 H 1.08994 * 110.40704 * 100.80104 * 15 9 7 32 32 H 0.97002 * 119.99817 * 315.99240 * 18 16 13 33 33 H 1.08007 * 118.46021 * 0.15490 * 22 21 19 34 34 H 1.09000 * 109.70803 * 167.17203 * 24 23 22 35 35 H 1.09008 * 109.70280 * 287.74359 * 24 23 22 36 36 H 1.08997 * 109.70544 * 56.99664 * 25 24 23 37 37 H 1.09004 * 109.70357 * 177.60684 * 25 24 23 38 38 H 1.08993 * 109.46024 * 282.64135 * 26 21 19 39 39 H 1.09004 * 109.45451 * 42.58391 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3960 2.1051 -1.3952 5 1 1.5022 2.6211 0.7993 6 1 3.5949 1.4130 0.5958 7 6 2.0103 -1.2021 0.0005 8 1 3.0799 -1.2082 -0.1488 9 7 1.3388 -2.3804 0.1903 10 6 1.8193 -3.7546 -0.0843 11 6 1.2879 -4.5962 1.0959 12 1 2.0208 -5.0691 1.7496 13 6 0.0726 -3.8320 1.6573 14 1 -0.0998 -3.7354 2.7293 15 6 -0.0329 -2.5700 0.7167 16 6 -0.1168 -5.1918 0.9822 17 1 -0.5795 -5.2026 -0.0047 18 7 -0.4377 -6.3336 1.8421 19 6 -1.3978 -7.2052 1.4747 20 8 -1.9987 -7.0434 0.4283 21 6 -1.7080 -8.3107 2.3068 22 6 -2.6626 -9.1589 1.9192 23 8 -3.0276 -10.2317 2.6409 24 6 -2.1243 -10.6728 3.6907 25 6 -1.7062 -9.4457 4.5124 26 6 -0.9444 -8.4878 3.5905 27 1 -0.4849 0.8400 -0.0004 28 1 2.9087 -3.7787 -0.1082 29 1 1.4110 -4.1207 -1.0263 30 1 -0.3409 -1.7003 1.2972 31 1 -0.7320 -2.7498 -0.0999 32 1 0.0409 -6.4624 2.6759 33 1 -3.1652 -8.9744 0.9811 34 1 -2.6319 -11.3908 4.3348 35 1 -1.2431 -11.1361 3.2467 36 1 -2.5921 -8.9490 4.9079 37 1 -1.0606 -9.7561 5.3340 38 1 0.0411 -8.8996 3.3729 39 1 -0.8332 -7.5217 4.0830 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958373320.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:28 Heat of formation + Delta-G solvation = 2.057290 kcal Electronic energy + Delta-G solvation = -21193.828332 eV Core-core repulsion = 17910.873290 eV Total energy + Delta-G solvation = -3282.955042 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.79044 -39.39149 -38.12903 -34.73763 -34.20423 -32.51060 -31.78835 -30.14958 -26.96485 -26.11862 -25.79832 -24.46027 -22.13179 -20.96849 -20.34469 -19.27067 -18.99614 -17.99618 -16.88144 -16.64010 -16.04158 -15.69389 -15.21887 -14.79997 -14.62562 -14.26780 -13.85851 -13.58271 -13.43932 -13.14828 -12.94920 -12.71157 -12.18492 -11.67710 -11.51073 -11.41697 -11.32268 -11.01720 -10.94917 -10.82184 -10.30514 -10.16118 -10.15932 -9.77050 -9.71480 -9.14916 -8.80568 -8.70188 -8.20644 -6.85185 -5.78332 -3.12766 1.26230 2.87607 3.35141 3.37475 3.41611 3.44955 3.46720 4.24963 4.32454 4.39835 4.49168 4.50220 4.78701 4.88167 5.04769 5.13302 5.21022 5.24361 5.40491 5.45309 5.46929 5.60689 5.65594 5.75129 5.84814 5.91816 5.97718 6.10717 6.30784 6.55296 6.71257 6.85080 6.90686 6.98832 7.38047 7.55824 7.70431 7.73341 8.22108 8.41239 9.12195 9.74913 10.52470 11.35960 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.048669 B = 0.003073 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.173747 B = 9109.618635 C = 9218.834322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.593 5.593 10 C 0.156 3.844 11 C -0.185 4.185 12 H 0.100 0.900 13 C -0.184 4.184 14 H 0.104 0.896 15 C 0.189 3.811 16 C 0.096 3.904 17 H 0.132 0.868 18 N -0.697 5.697 19 C 0.572 3.428 20 O -0.558 6.558 21 C -0.314 4.314 22 C 0.157 3.843 23 O -0.312 6.312 24 C 0.052 3.948 25 C -0.157 4.157 26 C -0.075 4.075 27 H 0.255 0.745 28 H 0.051 0.949 29 H 0.027 0.973 30 H 0.089 0.911 31 H 0.030 0.970 32 H 0.396 0.604 33 H 0.182 0.818 34 H 0.108 0.892 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.535 -20.874 10.236 23.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.316 5.316 10 C 0.029 3.971 11 C -0.206 4.206 12 H 0.118 0.882 13 C -0.205 4.205 14 H 0.122 0.878 15 C 0.062 3.938 16 C -0.010 4.010 17 H 0.149 0.851 18 N -0.345 5.345 19 C 0.363 3.637 20 O -0.439 6.439 21 C -0.319 4.319 22 C 0.089 3.911 23 O -0.222 6.222 24 C -0.022 4.022 25 C -0.194 4.194 26 C -0.112 4.112 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.045 0.955 30 H 0.107 0.893 31 H 0.048 0.952 32 H 0.231 0.769 33 H 0.198 0.802 34 H 0.126 0.874 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.139 -20.608 9.467 22.894 hybrid contribution 1.013 0.890 0.714 1.525 sum -2.126 -19.718 10.181 22.293 Atomic orbital electron populations 1.69905 1.05058 1.25441 1.55621 1.24913 0.95646 0.98010 1.01732 0.86094 0.78717 0.83298 0.77571 1.21481 1.21571 1.20538 1.18991 0.90818 0.82294 1.43458 0.90541 1.45127 1.13646 0.99968 1.72901 1.21121 0.97130 0.85879 0.92938 1.24232 0.90317 1.02768 1.03278 0.88204 1.25438 1.01846 0.93324 0.99940 0.87821 1.21649 0.86736 0.92269 0.93125 1.21857 0.98455 0.84625 0.96084 0.85081 1.45312 1.38518 1.26339 1.24338 1.16523 0.79533 0.82069 0.85528 1.90817 1.51863 1.75972 1.25224 1.20048 1.08456 1.01727 1.01627 1.22997 0.91915 0.83232 0.92957 1.86280 1.46731 1.43192 1.46032 1.23556 0.93814 0.96519 0.88323 1.22191 1.01945 0.96632 0.98656 1.20280 0.98172 1.00396 0.92351 0.93518 0.93066 0.95500 0.89309 0.95219 0.76919 0.80176 0.87388 0.90811 0.90226 0.89498 0.90665 0.90183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.09 10.87 55.49 0.60 -26.49 16 2 C -0.01 -0.17 5.40 -17.43 -0.09 -0.26 16 3 Si 0.91 22.04 29.56 -169.99 -5.03 17.01 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.23 -6.40 10.35 -15.06 -0.16 -6.55 16 8 H 0.08 2.07 7.85 -52.48 -0.41 1.66 16 9 N -0.59 -15.45 3.38 -166.70 -0.56 -16.02 16 10 C 0.16 3.35 7.04 -2.41 -0.02 3.33 16 11 C -0.18 -3.35 6.97 -89.29 -0.62 -3.97 16 12 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 13 C -0.18 -3.59 7.34 -87.42 -0.64 -4.23 16 14 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 15 C 0.19 4.66 5.76 -0.54 0.00 4.66 16 16 C 0.10 1.69 5.93 -67.93 -0.40 1.29 16 17 H 0.13 2.64 7.40 -51.93 -0.38 2.26 16 18 N -0.70 -10.01 5.48 -56.65 -0.31 -10.32 16 19 C 0.57 8.64 7.53 -14.90 -0.11 8.53 16 20 O -0.56 -10.55 15.48 5.15 0.08 -10.48 16 21 C -0.31 -3.56 5.70 -105.08 -0.60 -4.15 16 22 C 0.16 1.67 10.46 29.06 0.30 1.98 16 23 O -0.31 -2.89 10.48 -14.89 -0.16 -3.04 16 24 C 0.05 0.31 7.15 37.41 0.27 0.58 16 25 C -0.16 -0.94 6.23 -26.36 -0.16 -1.10 16 26 C -0.07 -0.60 5.08 -27.91 -0.14 -0.74 16 27 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 2.43 6.52 -51.93 -0.34 2.09 16 31 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.40 4.54 6.94 -40.82 -0.28 4.26 16 33 H 0.18 1.97 7.21 -52.48 -0.38 1.59 16 34 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.62 7.15 -51.93 -0.37 0.25 16 LS Contribution 320.30 15.07 4.83 4.83 Total: -1.00 -33.13 320.30 -8.46 -41.58 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -5.53 Total: 3.56 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -2.38 Total: -0.65 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: -0.27 Total: -52.82 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -0.08 Total: -13.52 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.13 -8.46 -41.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958373320.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.640 kcal (2) G-P(sol) polarization free energy of solvation -33.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds