Wall clock time and date at job start Tue Mar 31 2020 00:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 119.99854 * 2 1 4 4 H 1.48504 * 109.47049 * 274.81081 * 3 2 1 5 5 H 1.48496 * 109.47168 * 34.81324 * 3 2 1 6 6 H 1.48498 * 109.47067 * 154.81523 * 3 2 1 7 7 C 1.38809 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99828 * 170.81032 * 7 2 1 9 9 N 1.36934 * 120.00290 * 350.81856 * 7 2 1 10 10 C 1.48145 * 127.83824 * 164.38686 * 9 7 2 11 11 C 1.54388 * 104.61831 * 140.41221 * 10 9 7 12 12 H 1.08995 * 117.61723 * 242.76441 * 11 10 9 13 13 C 1.54147 * 106.22753 * 23.25229 * 11 10 9 14 14 H 1.09002 * 121.78944 * 221.55300 * 13 11 10 15 15 C 1.48148 * 127.83738 * 344.38510 * 9 7 2 16 16 C 1.53003 * 59.75331 * 113.48664 * 13 11 10 17 17 H 1.08998 * 117.44385 * 252.36887 * 16 13 11 18 18 N 1.46498 * 117.44017 * 107.62935 * 16 13 11 19 19 C 1.34773 * 120.00459 * 135.99982 * 18 16 13 20 20 O 1.21743 * 119.99698 * 359.97438 * 19 18 16 21 21 C 1.41798 * 120.00355 * 179.97438 * 19 18 16 22 22 C 1.33454 * 118.78667 * 180.02562 * 21 19 18 23 23 O 1.34350 * 123.08134 * 180.13828 * 22 21 19 24 24 C 1.45356 * 117.48055 * 343.66797 * 23 22 21 25 25 C 1.53482 * 108.26231 * 47.47340 * 24 23 22 26 26 C 1.50411 * 118.78557 * 359.72619 * 21 19 18 27 27 H 0.96996 * 119.99755 * 0.02562 * 1 2 3 28 28 H 1.09000 * 110.40958 * 21.62529 * 10 9 7 29 29 H 1.09002 * 110.50414 * 259.24626 * 10 9 7 30 30 H 1.09001 * 110.40818 * 338.37139 * 15 9 7 31 31 H 1.08994 * 110.40704 * 100.80104 * 15 9 7 32 32 H 0.97002 * 119.99817 * 315.99240 * 18 16 13 33 33 H 1.08007 * 118.46021 * 0.15490 * 22 21 19 34 34 H 1.09000 * 109.70803 * 167.17203 * 24 23 22 35 35 H 1.09008 * 109.70280 * 287.74359 * 24 23 22 36 36 H 1.08997 * 109.70544 * 56.99664 * 25 24 23 37 37 H 1.09004 * 109.70357 * 177.60684 * 25 24 23 38 38 H 1.08993 * 109.46024 * 282.64135 * 26 21 19 39 39 H 1.09004 * 109.45451 * 42.58391 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3960 2.1051 -1.3952 5 1 1.5022 2.6211 0.7993 6 1 3.5949 1.4130 0.5958 7 6 2.0103 -1.2021 0.0005 8 1 3.0799 -1.2082 -0.1488 9 7 1.3388 -2.3804 0.1903 10 6 1.8193 -3.7546 -0.0843 11 6 1.2879 -4.5962 1.0959 12 1 2.0208 -5.0691 1.7496 13 6 0.0726 -3.8320 1.6573 14 1 -0.0998 -3.7354 2.7293 15 6 -0.0329 -2.5700 0.7167 16 6 -0.1168 -5.1918 0.9822 17 1 -0.5795 -5.2026 -0.0047 18 7 -0.4377 -6.3336 1.8421 19 6 -1.3978 -7.2052 1.4747 20 8 -1.9987 -7.0434 0.4283 21 6 -1.7080 -8.3107 2.3068 22 6 -2.6626 -9.1589 1.9192 23 8 -3.0276 -10.2317 2.6409 24 6 -2.1243 -10.6728 3.6907 25 6 -1.7062 -9.4457 4.5124 26 6 -0.9444 -8.4878 3.5905 27 1 -0.4849 0.8400 -0.0004 28 1 2.9087 -3.7787 -0.1082 29 1 1.4110 -4.1207 -1.0263 30 1 -0.3409 -1.7003 1.2972 31 1 -0.7320 -2.7498 -0.0999 32 1 0.0409 -6.4624 2.6759 33 1 -3.1652 -8.9744 0.9811 34 1 -2.6319 -11.3908 4.3348 35 1 -1.2431 -11.1361 3.2467 36 1 -2.5921 -8.9490 4.9079 37 1 -1.0606 -9.7561 5.3340 38 1 0.0411 -8.8996 3.3729 39 1 -0.8332 -7.5217 4.0830 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958373320.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:28 Heat of formation + Delta-G solvation = -20.621065 kcal Electronic energy + Delta-G solvation = -21194.811739 eV Core-core repulsion = 17910.873290 eV Total energy + Delta-G solvation = -3283.938449 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.72083 -40.59342 -39.56335 -36.13544 -35.31017 -34.07859 -32.64559 -31.89312 -28.78453 -27.70712 -26.69494 -25.49547 -23.47319 -22.24936 -21.96822 -20.89689 -19.85204 -18.93394 -18.79973 -17.83146 -16.97137 -16.80476 -16.51435 -16.28848 -15.71261 -15.49951 -15.01697 -14.93210 -14.65176 -14.54017 -14.06929 -13.72175 -13.65425 -13.34995 -13.18860 -12.85630 -12.72640 -12.27892 -12.06942 -12.03156 -11.88798 -11.77826 -11.69229 -11.60796 -11.01275 -10.81669 -10.73065 -9.82304 -9.42316 -8.93743 -7.92356 -5.29940 0.33927 1.46778 1.48491 1.58674 2.02688 2.20460 2.36859 2.49211 2.91106 3.28465 3.59478 3.71506 3.75730 3.86275 3.93784 3.97619 4.09153 4.20437 4.22954 4.35398 4.37145 4.45180 4.60272 4.75805 4.82955 4.91491 4.96069 4.98197 5.09991 5.20248 5.24342 5.26958 5.40050 5.45333 5.56012 5.62449 6.15222 6.20148 6.58788 6.98705 7.26123 7.66050 8.44929 9.21645 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.048669 B = 0.003073 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.173747 B = 9109.618635 C = 9218.834322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.065 4.065 3 Si 0.984 3.016 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.264 1.264 7 C -0.242 4.242 8 H 0.085 0.915 9 N -0.617 5.617 10 C 0.148 3.852 11 C -0.160 4.160 12 H 0.139 0.861 13 C -0.186 4.186 14 H 0.126 0.874 15 C 0.191 3.809 16 C 0.113 3.887 17 H 0.102 0.898 18 N -0.682 5.682 19 C 0.568 3.432 20 O -0.605 6.605 21 C -0.325 4.325 22 C 0.169 3.831 23 O -0.319 6.319 24 C 0.043 3.957 25 C -0.152 4.152 26 C -0.075 4.075 27 H 0.250 0.750 28 H 0.067 0.933 29 H 0.018 0.982 30 H 0.056 0.944 31 H -0.004 1.004 32 H 0.415 0.585 33 H 0.169 0.831 34 H 0.134 0.866 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.115 0.885 38 H 0.089 0.911 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.897 -22.887 12.537 26.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.258 4.258 3 Si 0.811 3.189 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.189 1.189 7 C -0.370 4.370 8 H 0.103 0.897 9 N -0.340 5.340 10 C 0.023 3.977 11 C -0.181 4.181 12 H 0.157 0.843 13 C -0.207 4.207 14 H 0.144 0.856 15 C 0.064 3.936 16 C 0.006 3.994 17 H 0.120 0.880 18 N -0.332 5.332 19 C 0.362 3.638 20 O -0.490 6.490 21 C -0.330 4.330 22 C 0.100 3.900 23 O -0.229 6.229 24 C -0.030 4.030 25 C -0.189 4.189 26 C -0.112 4.112 27 H 0.059 0.941 28 H 0.085 0.915 29 H 0.036 0.964 30 H 0.074 0.926 31 H 0.014 0.986 32 H 0.253 0.747 33 H 0.186 0.814 34 H 0.152 0.848 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.133 0.867 38 H 0.108 0.892 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.465 -22.676 11.811 25.610 hybrid contribution 0.437 1.394 -0.054 1.461 sum -1.028 -21.283 11.757 24.336 Atomic orbital electron populations 1.70118 1.06710 1.25820 1.57069 1.25819 0.96499 1.01547 1.01970 0.84992 0.77898 0.78615 0.77345 1.21334 1.21910 1.18876 1.19429 0.91485 0.83402 1.42705 0.89707 1.45421 1.13917 1.01226 1.73477 1.21283 0.98130 0.84327 0.94010 1.24151 0.90666 1.01530 1.01708 0.84316 1.25113 1.03922 0.91737 0.99972 0.85577 1.21360 0.85982 0.93579 0.92646 1.21386 0.98001 0.84846 0.95206 0.88008 1.45084 1.38623 1.24948 1.24549 1.17118 0.78738 0.82678 0.85247 1.90800 1.53526 1.77182 1.27504 1.20002 1.09628 1.00567 1.02819 1.22884 0.91021 0.83435 0.92617 1.86279 1.47732 1.42233 1.46667 1.23938 0.94182 0.97078 0.87779 1.22199 1.01936 0.95885 0.98866 1.20375 0.98565 1.01415 0.90862 0.94094 0.91457 0.96380 0.92590 0.98562 0.74669 0.81427 0.84828 0.89619 0.90972 0.86669 0.89239 0.89785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.42 10.87 21.65 0.24 -58.19 16 2 C -0.06 -3.74 5.40 84.86 0.46 -3.28 16 3 Si 0.98 45.84 29.56 68.60 2.03 47.87 16 4 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 6 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.24 -13.73 10.35 84.03 0.87 -12.86 16 8 H 0.09 4.55 7.85 -2.91 -0.02 4.52 16 9 N -0.62 -32.69 3.38 -681.31 -2.30 -34.99 16 10 C 0.15 6.28 7.04 86.53 0.61 6.89 16 11 C -0.16 -5.48 6.97 -9.93 -0.07 -5.55 16 12 H 0.14 3.77 8.14 -2.39 -0.02 3.75 16 13 C -0.19 -7.17 7.34 -8.72 -0.06 -7.23 16 14 H 0.13 4.32 8.14 -2.39 -0.02 4.30 16 15 C 0.19 9.83 5.76 87.74 0.51 10.33 16 16 C 0.11 3.93 5.93 44.99 0.27 4.20 16 17 H 0.10 4.25 7.40 -2.39 -0.02 4.23 16 18 N -0.68 -18.41 5.48 -451.34 -2.47 -20.88 16 19 C 0.57 16.81 7.53 85.12 0.64 17.45 16 20 O -0.61 -23.53 15.48 -4.48 -0.07 -23.60 16 21 C -0.33 -6.86 5.70 -20.16 -0.11 -6.98 16 22 C 0.17 3.46 10.46 66.74 0.70 4.16 16 23 O -0.32 -5.27 10.48 -76.19 -0.80 -6.07 16 24 C 0.04 0.37 7.15 72.14 0.52 0.88 16 25 C -0.15 -1.25 6.23 30.83 0.19 -1.06 16 26 C -0.08 -0.95 5.08 29.83 0.15 -0.80 16 27 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 28 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 29 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 3.22 6.52 -2.39 -0.02 3.20 16 31 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 32 H 0.42 8.15 6.94 -92.71 -0.64 7.51 16 33 H 0.17 3.76 7.21 -2.91 -0.02 3.74 16 34 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 36 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.08 1.00 7.15 -2.39 -0.02 0.98 16 Total: -1.00 -75.19 320.30 1.70 -73.49 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 0.42 Total: 16.20 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: 4.66 Total: 6.16 kcal Atomic # 7 Polarization: -109.52 SS G_CDS: -4.54 Total: -114.06 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -0.87 Total: -29.66 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -75.19 1.70 -73.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958373320.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.872 kcal (2) G-P(sol) polarization free energy of solvation -75.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds